Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047902 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 5.2e-148 527.7 270 100.0
Rhsim12G0001000 Rhododendron simsii HOM05D003132 ORTHO05D003736 8.5e-66 254.6 241 60.2
Actinidia01536 Actinidia chinensis HOM05D003132 ORTHO05D003736 1.5e-65 253.8 247 59.1
vmacro00917 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 1.3e-61 240.7 241 57.7
Dinv22067 Davidia involucrata HOM05D003132 ORTHO05D003736 8.0e-56 221.5 234 56.0
Hma1.2p1_0378F.1_g139670 Hydrangea macrophylla HOM05D003132 ORTHO05D003736 1.0e-47 194.5 234 49.1
Cfa021494 Carpinus fangiana HOM05D003132 ORTHO05D003736 5.4e-44 182.2 239 46.9
Ciclev10020271m.g Citrus clementina HOM05D003132 ORTHO05D003736 8.6e-42 174.9 261 44.4
Duzib177G0974 Durio zibethinus HOM05D003132 ORTHO05D003736 4.2e-41 172.6 234 46.6
Haze_14017 Corylus avellana HOM05D003132 ORTHO05D003736 1.6e-40 170.6 233 47.6
Manes.18G119900 Manihot esculenta HOM05D003132 ORTHO05D003736 1.6e-40 170.6 234 47.4
TAR628G0652 Trochodendron aralioides HOM05D003132 ORTHO05D003736 8.0e-40 168.3 234 47.4
PGR102G0292 Punica granatum HOM05D003132 ORTHO05D003736 3.0e-39 166.4 248 46.4
QL09p001110 Quercus lobata HOM05D003132 ORTHO05D003736 4.0e-39 166.0 245 45.7
Prupe.8G002200 Prunus persica HOM05D003132 ORTHO05D003736 6.8e-39 165.2 249 42.2
Eucgr.F04096 Eucalyptus grandis HOM05D003132 ORTHO05D003736 1.5e-38 164.1 250 44.0
RcHm_v2.0_Chr6g0249521 Rosa chinensis HOM05D003132 ORTHO05D003736 7.5e-38 161.8 233 44.2
Gorai.004G268000 Gossypium raimondii HOM05D003132 ORTHO05D003736 1.7e-37 160.6 235 45.5
Gohir.D08G251300 Gossypium hirsutum HOM05D003132 ORTHO05D003736 8.3e-37 158.3 236 44.9
Lj9C693G4 Lonicera japonica HOM05D003132 ORTHO05D003736 1.8e-36 157.1 223 43.9
Gohir.A08G230900 Gossypium hirsutum HOM05D003132 ORTHO05D003736 4.1e-36 156.0 235 44.3
FvH4_2g00230 Fragaria vesca HOM05D003132 ORTHO05D003736 5.4e-36 155.6 242 41.7
FAN24G0668 Fragaria x ananassa HOM05D003132 ORTHO05D003736 5.4e-36 155.6 238 42.9
CiPaw.03G011700 Carya illinoinensis HOM05D003132 ORTHO05D003736 2.0e-35 153.7 251 44.2
FAN19G2774 Fragaria x ananassa HOM05D003132 ORTHO05D003736 5.9e-35 152.1 236 42.4
MD10G1001000 Malus domestica HOM05D003132 ORTHO05D003736 5.9e-35 152.1 250 40.8
Cpa.g.sc249.17 Carica papaya HOM05D003132 ORTHO05D003736 6.6e-34 148.7 251 38.2
Potri.019G066200 Populus trichocarpa HOM05D003132 ORTHO05D003736 6.6e-34 148.7 243 43.2
Nn5g27185 Nelumbo nucifera HOM05D003132 ORTHO05D003736 9.5e-33 144.8 254 42.1
COL.COLO4_25069 Corchorus olitorius HOM05D003132 ORTHO05D003736 8.0e-32 141.7 205 47.3
TWI12G0091 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 2.0e-30 137.1 211 41.7
Glyma.04G116900 Glycine max HOM05D003132 ORTHO05D003736 9.8e-30 134.8 246 39.0
Phvul.005G006600 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 3.2e-28 129.8 247 37.7
Medtr3g009180 Medicago truncatula HOM05D003132 ORTHO05D003736 5.4e-28 129.0 246 34.6
SEGI_30049 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 1.2e-27 127.9 253 38.3
ATR1089G070 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.6e-27 127.5 215 37.7
VMungo1080G0294 Vigna mungo HOM05D003132 ORTHO05D003736 1.6e-27 127.5 249 37.3
arahy.Tifrunner.gnm1.ann1.M3HMN7 Arachis hypogaea HOM05D003132 ORTHO05D003736 2.0e-27 127.1 233 39.1
arahy.Tifrunner.gnm1.ann1.F59MVU Arachis hypogaea HOM05D003132 ORTHO05D003736 4.6e-27 125.9 233 39.1
Lj3g0025144 Lotus japonicus HOM05D003132 ORTHO05D003736 1.0e-26 124.8 263 36.9
TPR.G16695 Trifolium pratense HOM05D003132 ORTHO05D003736 1.3e-26 124.4 249 35.7
ATR0171G023 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.5e-25 120.9 230 37.4
ATR0495G010 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.9e-25 120.6 231 38.5
Lj7C306G6 Lonicera japonica HOM05D000316 ORTHO05D000374 9.5e-25 118.2 221 33.9
MBI03_g39997_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 1.2e-24 117.9 232 37.9
Atru.chr13.2600 Acer truncatum HOM05D003132 ORTHO05D003736 2.1e-24 117.1 101 63.4
Sabra19G0078500 Salix brachista HOM05D003132 ORTHO05D003736 1.8e-23 114.0 208 39.9
Manes.02G158500 Manihot esculenta HOM05D003132 ORTHO05D003736 3.1e-23 113.2 221 35.7
SalBow7G2329 Salvia bowleyana HOM05D003132 ORTHO05D003736 3.1e-23 113.2 251 32.7
BraA05t21832Z Brassica rapa HOM05D003132 ORTHO05D003736 5.2e-23 112.5 251 33.9
Lsat_1_v5_gn_2_115101 Lactuca sativa HOM05D003132 ORTHO05D003736 5.2e-23 112.5 225 33.8
BcaB06g26045 Brassica carinata HOM05D003132 ORTHO05D003736 6.8e-23 112.1 247 34.0
Mapoly0003s0258 Marchantia polymorpha HOM05D003132 ORTHO05D003736 6.8e-23 112.1 224 35.3
Sp3g17790 Schrenkiella parvula HOM05D003132 ORTHO05D003736 6.8e-23 112.1 246 33.3
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 8.9e-23 111.7 229 33.6
C05p45020 Brassica napus HOM05D003132 ORTHO05D003736 8.9e-23 111.7 247 34.0
BcaB08g37217 Brassica carinata HOM05D003132 ORTHO05D003736 1.2e-22 111.3 234 34.6
Peaxi162Scf00647g00129 Petunia axillaris HOM05D003132 ORTHO05D003736 1.2e-22 111.3 214 36.9
SalBow7G4391 Salvia bowleyana HOM05D003132 ORTHO05D003736 1.2e-22 111.3 251 32.3
A10p27920 Brassica napus HOM05D003132 ORTHO05D003736 2.0e-22 110.5 237 32.9
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 2.0e-22 110.5 237 32.9
Glyma.04G254000 Glycine max HOM05D003132 ORTHO05D003736 2.0e-22 110.5 262 31.7
ECA238G0880 Erigeron canadensis HOM05D003132 ORTHO05D003736 2.6e-22 110.2 225 32.4
Thhalv10020497m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 2.6e-22 110.2 249 34.1
Sopen01g040690 Solanum pennellii HOM05D003132 ORTHO05D003736 2.6e-22 110.2 255 33.3
Duzib041G0476 Durio zibethinus HOM05D003132 ORTHO05D003736 5.8e-22 109.0 221 36.2
Sp6g33990 Schrenkiella parvula HOM05D003132 ORTHO05D003736 5.8e-22 109.0 250 32.0
Gohir.D06G041500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 7.5e-22 108.6 211 36.0
Zm00001eb398120 Zea mays HOM05D003132 ORTHO05D003736 7.5e-22 108.6 225 36.4
TAR628G0266 Trochodendron aralioides HOM05D003132 ORTHO05D003736 9.8e-22 108.2 261 34.1
A05p29830 Brassica napus HOM05D003132 ORTHO05D003736 1.3e-21 107.8 254 33.9
Solyc01g096990.4 Solanum lycopersicum HOM05D003132 ORTHO05D003736 1.3e-21 107.8 255 32.9
PGSC0003DMG400027521 Solanum tuberosum HOM05D003132 ORTHO05D003736 1.3e-21 107.8 245 32.2
Thecc.08G116200 Theobroma cacao HOM05D003132 ORTHO05D003736 1.3e-21 107.8 221 37.1
TPR.G32950 Trifolium pratense HOM05D003132 ORTHO05D003736 1.3e-21 107.8 251 33.9
VMungo1309G0264 Vigna mungo HOM05D003132 ORTHO05D003736 1.3e-21 107.8 224 32.6
AL3G33220 Arabidopsis lyrata HOM05D003132 ORTHO05D003736 1.7e-21 107.5 243 32.5
CSS0019182 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 1.7e-21 107.5 212 34.0
Migut.C01198 Erythranthe guttata HOM05D003132 ORTHO05D003736 1.7e-21 107.5 232 32.8
FAN08G0026 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.7e-21 107.5 236 32.2
PGR044G0368 Punica granatum HOM05D003132 ORTHO05D003736 1.7e-21 107.5 230 35.7
Ah.05g172730 Amaranthus hybridus HOM05D003132 ORTHO05D003736 2.2e-21 107.1 268 32.1
DCAR_020428 Daucus carota HOM05D003132 ORTHO05D003736 2.2e-21 107.1 221 33.5
Glyma.06G108200 Glycine max HOM05D003132 ORTHO05D003736 2.2e-21 107.1 262 30.9
PSO017G5000 Papaver somniferum HOM05D003132 ORTHO05D003736 2.2e-21 107.1 273 31.1
THA.LOC104806806 Tarenaya hassleriana HOM05D003132 ORTHO05D003736 2.2e-21 107.1 256 32.0
CARHR095280 Cardamine hirsuta HOM05D003132 ORTHO05D003736 2.9e-21 106.7 238 31.9
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 2.9e-21 106.7 214 35.0
FAN04G1930 Fragaria x ananassa HOM05D003132 ORTHO05D003736 2.9e-21 106.7 236 32.2
Nitab4.5_0002247g0160 Nicotiana tabacum HOM05D003132 ORTHO05D003736 2.9e-21 106.7 244 33.2
Nitab4.5_0004014g0020 Nicotiana tabacum HOM05D003132 ORTHO05D003736 2.9e-21 106.7 218 35.3
arahy.Tifrunner.gnm1.ann1.M9VU1N Arachis hypogaea HOM05D003132 ORTHO05D003736 3.7e-21 106.3 230 32.2
BcaC05g28420 Brassica carinata HOM05D003132 ORTHO05D003736 3.7e-21 106.3 245 31.8
Gohir.A06G040500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 3.7e-21 106.3 211 35.5
Nn1g08540 Nelumbo nucifera HOM05D003132 ORTHO05D003736 3.7e-21 106.3 243 35.0
AT3G19770 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 4.9e-21 105.9 246 30.5
CAN.G134.60 Capsicum annuum HOM05D003132 ORTHO05D003736 4.9e-21 105.9 240 31.2
FAN18G1429 Fragaria x ananassa HOM05D003132 ORTHO05D003736 4.9e-21 105.9 236 32.2
Lalb_Chr11g0065661 Lupinus albus HOM05D003132 ORTHO05D003736 4.9e-21 105.9 260 32.3
Actinidia29433 Actinidia chinensis HOM05D003132 ORTHO05D003736 6.4e-21 105.5 235 31.1
FAN13G2880 Fragaria x ananassa HOM05D003132 ORTHO05D003736 6.4e-21 105.5 236 32.2
Sed0019762 Sechium edule HOM05D003132 ORTHO05D003736 6.4e-21 105.5 216 34.7
CDE04G2334 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 8.3e-21 105.1 222 36.0
Dinv26724 Davidia involucrata HOM05D003132 ORTHO05D003736 8.3e-21 105.1 227 33.9
QL12p035360 Quercus lobata HOM05D003132 ORTHO05D003736 8.3e-21 105.1 223 32.3
SMO356G0397 Selaginella moellendorffii HOM05D003132 ORTHO05D003736 8.3e-21 105.1 213 34.7
Aqoxy5G02472 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 1.1e-20 104.8 250 35.2
arahy.Tifrunner.gnm1.ann1.KS02B5 Arachis hypogaea HOM05D003132 ORTHO05D003736 1.1e-20 104.8 230 32.2
BolC5t33226H Brassica oleracea HOM05D003132 ORTHO05D003736 1.1e-20 104.8 245 31.4
Cpa.g.sc828.2 Carica papaya HOM05D003132 ORTHO05D003736 1.1e-20 104.8 241 34.0
CDE06G0428 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.4e-20 104.4 233 33.5
FvH4_5g38820 Fragaria vesca HOM05D003132 ORTHO05D003736 1.4e-20 104.4 236 31.8
Gorai.010G046700 Gossypium raimondii HOM05D003132 ORTHO05D003736 1.4e-20 104.4 211 35.5
Lj1g0008302 Lotus japonicus HOM05D003132 ORTHO05D003736 1.4e-20 104.4 223 33.6
MD00G1104300 Malus domestica HOM05D003132 ORTHO05D003736 1.4e-20 104.4 239 33.1
Medtr3g073360 Medicago truncatula HOM05D003132 ORTHO05D003736 1.4e-20 104.4 247 32.8
RcHm_v2.0_Chr7g0240821 Rosa chinensis HOM05D003132 ORTHO05D003736 1.4e-20 104.4 258 32.2
Hund20801 Selenicereus undatus HOM05D003132 ORTHO05D003736 1.4e-20 104.4 238 32.8
Zm00001eb064020 Zea mays HOM05D003132 ORTHO05D003736 1.4e-20 104.4 222 32.9
CDE06G1857 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.9e-20 104.0 228 32.5
Ca_25763_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 1.9e-20 104.0 248 31.9
vmacro00793 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 1.9e-20 104.0 230 34.3
TWI56G0630 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 2.4e-20 103.6 253 31.6
BcaB08g37215 Brassica carinata HOM05D003132 ORTHO05D003736 3.2e-20 103.2 239 31.8
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 3.2e-20 103.2 236 32.2
AUR62023605 Chenopodium quinoa HOM05D003132 ORTHO05D003736 3.2e-20 103.2 212 33.5
HanXRQChr14g0440811 Helianthus annuus HOM05D003132 ORTHO05D003736 3.2e-20 103.2 215 31.6
Dinv27388 Davidia involucrata HOM05D003132 ORTHO05D003736 4.1e-20 102.8 232 32.3
Rhsim11G0064900 Rhododendron simsii HOM05D003132 ORTHO05D003736 4.1e-20 102.8 264 31.1
Sc01g0001580 Simmondsia chinensis HOM05D003132 ORTHO05D003736 4.1e-20 102.8 211 32.2
HanXRQChr15g0496671 Helianthus annuus HOM05D003132 ORTHO05D003736 5.4e-20 102.4 228 30.7
Manes.18G072550 Manihot esculenta HOM05D003132 ORTHO05D003736 5.4e-20 102.4 265 30.6
PSO170G1030 Papaver somniferum HOM05D003132 ORTHO05D003736 5.4e-20 102.4 264 31.1
Carub.0003s1964 Capsella rubella HOM05D003132 ORTHO05D003736 7.1e-20 102.1 245 30.2
Ciclev10001011m.g Citrus clementina HOM05D003132 ORTHO05D003736 7.1e-20 102.1 232 32.3
MELO3C008519.2 Cucumis melo HOM05D003132 ORTHO05D003736 7.1e-20 102.1 211 35.1
Phvul.009G026000 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 7.1e-20 102.1 223 33.2
Prupe.1G506400 Prunus persica HOM05D003132 ORTHO05D003736 7.1e-20 102.1 225 32.9
Cfa015956 Carpinus fangiana HOM05D003132 ORTHO05D003736 9.2e-20 101.7 258 30.2
CiPaw.05G229400 Carya illinoinensis HOM05D003132 ORTHO05D003736 9.2e-20 101.7 266 30.8
Psat5g230840 Pisum sativum HOM05D003132 ORTHO05D003736 9.2e-20 101.7 83 62.7
Ca_14120_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 1.2e-19 101.3 207 36.7
AT5G09320 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 1.6e-19 100.9 233 31.3
Haze_00527 Corylus avellana HOM05D003132 ORTHO05D003736 1.6e-19 100.9 261 29.9
Oeu001990.2 Olea europaea HOM05D003132 ORTHO05D003736 1.6e-19 100.9 261 32.2
HPP92_002181 Vanilla planifolia HOM05D003132 ORTHO05D003736 1.6e-19 100.9 240 34.6
MBI03_g11133_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 2.1e-19 100.5 215 33.5
TAR624G0618 Trochodendron aralioides HOM05D003132 ORTHO05D003736 2.1e-19 100.5 242 34.3
Haze_00528 Corylus avellana HOM05D003132 ORTHO05D003736 2.7e-19 100.1 247 30.4
CsaV3_2G011340 Cucumis sativus L. HOM05D003132 ORTHO05D003736 3.5e-19 99.8 217 34.1
Pp3c23_18370 Physcomitrium patens HOM05D003132 ORTHO05D003736 3.5e-19 99.8 236 32.6
Psat5g133920 Pisum sativum HOM05D003132 ORTHO05D003736 4.6e-19 99.4 221 33.5
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 6.0e-19 99.0 234 29.1
CARHR204070 Cardamine hirsuta HOM05D003132 ORTHO05D003736 6.0e-19 99.0 211 32.7
CiPaw.06G024400 Carya illinoinensis HOM05D003132 ORTHO05D003736 7.8e-19 98.6 263 29.7
ClCG06G009880 Citrullus lanatus HOM05D003132 ORTHO05D003736 1.3e-18 97.8 266 31.2
FvH4_3g37600 Fragaria vesca HOM05D003132 ORTHO05D003736 2.3e-18 97.1 71 69.0
Potri.005G171500 Populus trichocarpa HOM05D003132 ORTHO05D003736 2.3e-18 97.1 272 30.9
COL.COLO4_21818 Corchorus olitorius HOM05D003132 ORTHO05D003736 3.0e-18 96.7 221 33.5
MD15G1358700 Malus domestica HOM05D003132 ORTHO05D003736 3.0e-18 96.7 225 32.4
Oeu039582.2 Olea europaea HOM05D003132 ORTHO05D003736 3.0e-18 96.7 239 32.6
SGA_v2.0_scaffold28G12034 Striga asiatica HOM05D003132 ORTHO05D003736 3.9e-18 96.3 247 29.6
EL10Ac1g00043 Beta vulgaris HOM05D003132 ORTHO05D003736 3.3e-17 93.2 229 31.0
unitig_21.g20190 Utricularia gibba HOM05D003132 ORTHO05D003736 3.3e-17 93.2 212 32.5
ECA246G0273 Erigeron canadensis HOM05D003132 ORTHO05D003736 7.3e-17 92.0 215 29.8
SGA_v2.0_scaffold118G32441 Striga asiatica HOM05D003132 ORTHO05D003736 9.5e-17 91.7 211 31.3
Sabra05G0129000 Salix brachista HOM05D003132 ORTHO05D003736 1.2e-16 91.3 225 32.0
Eucgr.F03739 Eucalyptus grandis HOM05D003132 ORTHO05D003736 1.6e-16 90.9 85 52.9
BcaC05g28406 Brassica carinata HOM05D003132 ORTHO05D003736 2.1e-16 90.5 133 40.6
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 2.8e-16 90.1 75 54.7
AUR62004688 Chenopodium quinoa HOM05D003132 ORTHO05D003736 2.8e-16 90.1 215 30.2
Atru.chr13.1311 Acer truncatum HOM05D003132 ORTHO05D003736 6.2e-16 89.0 85 52.9
Atru.chr13.1355 Acer truncatum HOM05D003132 ORTHO05D003736 6.2e-16 89.0 85 52.9
GSVIVG01037119001 Vitis vinifera HOM05D003132 ORTHO05D003736 1.4e-15 87.8 192 37.0
GSVIVG01008947001 Vitis vinifera HOM05D003132 ORTHO05D003736 3.1e-15 86.7 85 50.6
Zm00001eb090720 Zea mays HOM05D003132 ORTHO05D003736 3.7e-13 79.7 62 56.5
AagrBONN_evm.TU.Sc2ySwM_368.655 Anthoceros agrestis HOM05D003132 ORTHO05D003736 4.9e-13 79.3 67 58.2
Ciclev10024368m.g Citrus clementina HOM05D003132 ORTHO05D003736 1.9e-12 77.4 77 53.2
CBR_g241 Chara braunii HOM05D003132 ORTHO05D003736 2.7e-11 73.6 66 54.5
Lsat_1_v5_gn_9_67980 Lactuca sativa HOM05D003132 ORTHO05D003736 1.0e-10 71.6 75 42.7
PRCOL_00006551 Prasinoderma coloniale HOM05D003132 ORTHO05D003736 5.1e-10 69.3 69 46.4
SGA_v2.0_scaffold297G47601 Striga asiatica HOM05D003132 ORTHO05D003736 1.2e-08 64.7 198 27.8
Potri.013G092100 Populus trichocarpa HOM05D003132 ORTHO05D003736 3.6e-08 63.2 170 34.1
MD05G1001100 Malus domestica HOM05D003132 ORTHO05D003736 1.2e-06 58.2 48 56.2


User provided reference genes

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