Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.3e-142 509.6 243 100.0
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 3.3e-141 505.0 243 99.2
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 7.5e-122 440.7 243 86.4
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 2.0e-106 389.4 226 78.8
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 1.4e-104 383.3 244 75.0
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 9.2e-104 380.6 233 76.0
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 3.0e-102 375.6 239 74.5
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 8.7e-102 374.0 249 73.5
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 1.9e-101 372.9 245 73.1
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 2.5e-101 372.5 241 73.9
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 4.3e-101 371.7 237 74.3
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 9.6e-101 370.5 234 75.6
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.6e-100 369.8 229 76.0
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 8.1e-100 367.5 224 75.9
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 1.4e-99 366.7 230 73.5
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 2.4e-99 365.9 248 71.4
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 2.4e-99 365.9 234 74.4
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 2.4e-99 365.9 230 76.1
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 4.0e-99 365.2 237 71.3
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 4.0e-99 365.2 226 74.8
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 5.3e-99 364.8 226 76.1
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 9.0e-99 364.0 229 76.9
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 1.2e-98 363.6 219 75.8
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 1.5e-98 363.2 227 75.3
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 1.5e-98 363.2 240 74.2
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.5e-98 363.2 226 74.8
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 2.0e-98 362.8 226 75.7
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 2.6e-98 362.5 230 73.0
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 3.8e-97 358.6 219 77.2
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 6.4e-97 357.8 219 74.0
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 8.4e-97 357.5 236 74.2
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 1.6e-95 353.2 243 69.1
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 2.3e-94 349.4 246 70.3
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 6.6e-94 347.8 215 74.4
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 8.7e-94 347.4 239 68.6
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 8.7e-94 347.4 229 71.6
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 5.6e-93 344.7 232 71.1
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 7.3e-93 344.4 230 69.6
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 1.6e-92 343.2 240 68.8
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 2.8e-92 342.4 222 72.1
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 2.8e-92 342.4 235 69.4
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 2.8e-92 342.4 242 66.5
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 2.8e-92 342.4 242 66.5
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 3.6e-92 342.0 228 68.9
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 3.6e-92 342.0 230 69.1
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 4.8e-92 341.7 222 73.0
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 4.8e-92 341.7 222 73.0
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 4.8e-92 341.7 222 73.0
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 4.8e-92 341.7 229 69.4
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 8.1e-92 340.9 232 70.3
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 8.1e-92 340.9 253 68.4
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 1.1e-91 340.5 223 71.3
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 1.4e-91 340.1 231 68.0
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.4e-91 340.1 202 77.2
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 1.8e-91 339.7 233 69.1
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 4.0e-91 338.6 227 68.7
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 9.0e-91 337.4 205 74.1
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 9.0e-91 337.4 243 67.9
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 2.0e-90 336.3 232 68.1
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 2.6e-90 335.9 229 67.7
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 7.6e-90 334.3 223 68.6
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 1.3e-89 333.6 216 71.8
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 1.3e-89 333.6 231 66.2
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 6.4e-89 331.3 208 72.6
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 1.1e-88 330.5 242 63.6
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 1.4e-88 330.1 231 66.7
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 9.3e-88 327.4 236 66.1
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 4.6e-87 325.1 240 64.6
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 6.0e-87 324.7 227 67.8
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 1.0e-86 323.9 231 65.8
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 1.8e-86 323.2 228 66.2
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 2.3e-86 322.8 224 68.8
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 6.7e-86 321.2 216 68.5
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 8.7e-86 320.9 227 67.0
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 1.9e-85 319.7 250 62.0
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 3.3e-85 318.9 217 68.2
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 7.4e-85 317.8 235 64.7
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 1.3e-84 317.0 219 68.0
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 6.2e-84 314.7 225 68.9
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 1.8e-83 313.2 171 88.3
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 5.3e-83 311.6 245 62.4
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 6.4e-81 304.7 246 62.2
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 8.4e-81 304.3 230 63.9
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 1.6e-79 300.1 219 66.7
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.7e-79 299.3 222 63.5
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 1.8e-78 296.6 175 79.4
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 2.5e-77 292.7 170 81.8
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 9.6e-77 290.8 180 77.2
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 6.2e-76 288.1 183 73.8
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 1.5e-74 283.5 200 67.0
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 4.9e-73 278.5 244 61.1
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 9.3e-72 274.2 179 70.4
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.6e-71 273.5 153 78.4
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 1.3e-68 263.8 169 74.0
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.4e-64 250.4 170 67.1
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 2.0e-61 240.0 166 68.1
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.4e-59 233.8 170 65.3
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 6.7e-54 214.9 290 40.3
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 3.1e-51 206.1 163 63.2
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 1.9e-48 196.8 225 46.2
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 7.4e-45 184.9 242 40.1
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 1.3e-41 174.1 114 74.6
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 8.0e-39 164.9 98 74.5
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 3.5e-34 149.4 136 49.3
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 3.5e-34 149.4 113 68.1
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 3.5e-34 149.4 113 59.3
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 9.4e-32 141.4 188 40.4
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 6.3e-20 102.1 69 75.4
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 5.6e-16 89.0 61 73.8
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 2.8e-15 86.7 96 52.1
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 1.4e-14 84.3 59 55.9
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 4.0e-14 82.8 60 61.7
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 8.9e-14 81.6 65 55.4
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.2e-13 81.3 119 38.7
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 5.8e-13 79.0 168 32.1
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 9.2e-11 71.6 119 35.3
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 1.5e-08 64.3 41 63.4
Psat1g141560 Pisum sativum HOM05D006551 ORTHO05D008546 2.3e-06 57.0 41 63.4


User provided reference genes

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