Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047721 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 3.2e-68 261.5 123 100.0
CSS0047222 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 6.4e-45 184.1 125 76.8
CSS0049552 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 4.3e-41 171.4 124 72.6
CSS0021836 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 4.6e-27 124.8 63 90.5
Dinv36267 Davidia involucrata HOM05D001013 ORTHO05D004597 6.0e-27 124.4 63 88.9
TAR633G1179 Trochodendron aralioides HOM05D001013 ORTHO05D004597 3.9e-26 121.7 63 87.3
Ca_01292_v3 Cicer arietinum L. HOM05D001013 ORTHO05D004597 1.5e-25 119.8 63 85.7
Potri.009G054600 Populus trichocarpa HOM05D001013 ORTHO05D004597 4.3e-25 118.2 63 85.7
Hund22038 Selenicereus undatus HOM05D001013 ORTHO05D004597 7.4e-25 117.5 82 68.3
TPR.G6821 Trifolium pratense HOM05D001013 ORTHO05D004597 7.4e-25 117.5 63 84.1
Glyma.15G034000 Glycine max HOM05D001013 ORTHO05D004597 9.7e-25 117.1 63 82.5
Rhsim13G0222300 Rhododendron simsii HOM05D001013 ORTHO05D004597 9.7e-25 117.1 58 87.9
Aqoxy1G00274 Aquilegia oxysepala HOM05D001013 ORTHO05D004597 1.3e-24 116.7 63 82.5
Eucgr.J00782 Eucalyptus grandis HOM05D001013 ORTHO05D004597 1.3e-24 116.7 58 87.9
Lj3g0023347 Lotus japonicus HOM05D001013 ORTHO05D004597 1.3e-24 116.7 63 84.1
Cpa.g.sc84.69 Carica papaya HOM05D001013 ORTHO05D004597 1.6e-24 116.3 63 82.5
VMungo1080G0609 Vigna mungo HOM05D001013 ORTHO05D004597 2.2e-24 115.9 98 59.2
Atru.chr3.2746 Acer truncatum HOM05D001013 ORTHO05D004597 2.8e-24 115.5 63 79.4
CiPaw.14G119800 Carya illinoinensis HOM05D001013 ORTHO05D004597 2.8e-24 115.5 63 81.0
Eucgr.J00780 Eucalyptus grandis HOM05D001013 ORTHO05D004597 2.8e-24 115.5 58 86.2
Peaxi162Scf01427g00007 Petunia axillaris HOM05D001013 ORTHO05D004597 2.8e-24 115.5 63 81.0
CANSAT01G2178 Cannabis sativa HOM05D001013 ORTHO05D004597 3.7e-24 115.2 63 82.5
Glyma.13G340300 Glycine max HOM05D001013 ORTHO05D004597 3.7e-24 115.2 63 82.5
Prupe.4G245700 Prunus persica HOM05D001013 ORTHO05D004597 3.7e-24 115.2 63 81.0
TAR636G2042 Trochodendron aralioides HOM05D001013 ORTHO05D004597 3.7e-24 115.2 63 81.0
EL10Ac4g10268 Beta vulgaris HOM05D001013 ORTHO05D004597 4.8e-24 114.8 58 87.9
EL10Ac4g10284 Beta vulgaris HOM05D001013 ORTHO05D004597 4.8e-24 114.8 58 87.9
Duzib170G0402 Durio zibethinus HOM05D001013 ORTHO05D004597 4.8e-24 114.8 63 81.0
Gohir.D09G111500 Gossypium hirsutum HOM05D001013 ORTHO05D004597 4.8e-24 114.8 63 81.0
Gorai.006G129200 Gossypium raimondii HOM05D001013 ORTHO05D004597 4.8e-24 114.8 63 81.0
MD03G1177200 Malus domestica HOM05D001013 ORTHO05D004597 4.8e-24 114.8 63 82.5
Actinidia16323 Actinidia chinensis HOM05D001013 ORTHO05D004597 6.3e-24 114.4 58 87.9
COL.COLO4_24880 Corchorus olitorius HOM05D001013 ORTHO05D004597 6.3e-24 114.4 63 79.4
RcHm_v2.0_Chr5g0051661 Rosa chinensis HOM05D001013 ORTHO05D004597 6.3e-24 114.4 58 86.2
TWI34G0448 Tripterygium wilfordii HOM05D001013 ORTHO05D004597 6.3e-24 114.4 63 82.5
Cfa009756 Carpinus fangiana HOM05D001013 ORTHO05D004597 8.2e-24 114.0 63 79.4
Haze_23121 Corylus avellana HOM05D001013 ORTHO05D004597 8.2e-24 114.0 63 79.4
Phvul.L009543 Phaseolus vulgaris HOM05D001013 ORTHO05D004597 8.2e-24 114.0 63 81.0
ClCG03G013290 Citrullus lanatus HOM05D001013 ORTHO05D004597 1.1e-23 113.6 63 79.4
MD11G1197900 Malus domestica HOM05D001013 ORTHO05D004597 1.1e-23 113.6 63 81.0
Sabra09G0039900 Salix brachista HOM05D001013 ORTHO05D004597 1.1e-23 113.6 63 82.5
Thecc.09G231300 Theobroma cacao HOM05D001013 ORTHO05D004597 1.1e-23 113.6 63 77.8
FAN21G2353 Fragaria x ananassa HOM05D001013 ORTHO05D004597 1.4e-23 113.2 58 86.2
MD11G1161000 Malus domestica HOM05D001013 ORTHO05D004597 1.4e-23 113.2 63 79.4
PSO384G0041 Papaver somniferum HOM05D001013 ORTHO05D004597 1.4e-23 113.2 58 84.5
PSO384G2146 Papaver somniferum HOM05D001013 ORTHO05D004597 1.4e-23 113.2 58 84.5
Ah.06g194350 Amaranthus hybridus HOM05D001013 ORTHO05D004597 1.8e-23 112.8 58 86.2
FvH4_3g29000 Fragaria vesca HOM05D001013 ORTHO05D004597 1.8e-23 112.8 58 84.5
FAN11G2909 Fragaria x ananassa HOM05D001013 ORTHO05D004597 1.8e-23 112.8 58 84.5
Nn2g15465 Nelumbo nucifera HOM05D001013 ORTHO05D004597 2.4e-23 112.5 63 79.4
BraA09t35819Z Brassica rapa HOM05D001013 ORTHO05D004597 3.1e-23 112.1 58 82.8
Thhalv10024224m.g Eutrema salsugineum HOM05D001013 ORTHO05D004597 3.1e-23 112.1 58 84.5
Medtr2g098030 Medicago truncatula HOM05D001013 ORTHO05D004597 3.1e-23 112.1 63 81.0
QL01p005011 Quercus lobata HOM05D001013 ORTHO05D004597 3.1e-23 112.1 63 76.2
SHI29743 Sapria himalayana HOM05D001013 ORTHO05D004597 3.1e-23 112.1 63 79.4
GSVIVG01025282001 Vitis vinifera HOM05D001013 ORTHO05D004597 3.1e-23 112.1 63 79.4
Ciclev10014051m.g Citrus clementina HOM05D001013 ORTHO05D004597 4.1e-23 111.7 63 79.4
MELO3C015199.2 Cucumis melo HOM05D001013 ORTHO05D004597 4.1e-23 111.7 63 77.8
CsaV3_1G042760 Cucumis sativus L. HOM05D001013 ORTHO05D004597 4.1e-23 111.7 63 77.8
Lalb_Chr24g0397071 Lupinus albus HOM05D001013 ORTHO05D004597 4.1e-23 111.7 63 79.4
Sed0014521 Sechium edule HOM05D001013 ORTHO05D004597 4.1e-23 111.7 58 82.8
CAN.G327.12 Capsicum annuum HOM05D001013 ORTHO05D004597 5.3e-23 111.3 63 77.8
ECA238G2654 Erigeron canadensis HOM05D001013 ORTHO05D004597 5.3e-23 111.3 58 82.8
Psat5g286360 Pisum sativum HOM05D001013 ORTHO05D004597 5.3e-23 111.3 82 65.9
arahy.Tifrunner.gnm1.ann1.EX6ZD6 Arachis hypogaea HOM05D001013 ORTHO05D004597 6.9e-23 110.9 63 76.2
arahy.Tifrunner.gnm1.ann1.I21QA9 Arachis hypogaea HOM05D001013 ORTHO05D004597 6.9e-23 110.9 63 76.2
MSTRG.18423 Avicennia marina HOM05D001013 ORTHO05D004597 6.9e-23 110.9 58 82.8
A09p01660 Brassica napus HOM05D001013 ORTHO05D004597 6.9e-23 110.9 58 81.0
CARHR250380 Cardamine hirsuta HOM05D001013 ORTHO05D004597 6.9e-23 110.9 58 82.8
AUR62000107 Chenopodium quinoa HOM05D001013 ORTHO05D004597 6.9e-23 110.9 82 68.3
AUR62019282 Chenopodium quinoa HOM05D001013 ORTHO05D004597 6.9e-23 110.9 82 68.3
AL6G50970 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 9.0e-23 110.5 58 82.8
Lsat_1_v5_gn_2_97481 Lactuca sativa HOM05D001013 ORTHO05D004597 9.0e-23 110.5 91 60.4
THA.LOC104817905 Tarenaya hassleriana HOM05D001013 ORTHO05D004597 9.0e-23 110.5 58 81.0
A09p01610 Brassica napus HOM05D001013 ORTHO05D004597 1.2e-22 110.2 58 81.0
Gohir.A09G114800 Gossypium hirsutum HOM05D001013 ORTHO05D004597 1.2e-22 110.2 63 77.8
PGR119G0568 Punica granatum HOM05D001013 ORTHO05D004597 1.2e-22 110.2 63 76.2
Manes.06G165500 Manihot esculenta HOM05D001013 ORTHO05D004597 1.5e-22 109.8 63 74.6
Sp7g32650 Schrenkiella parvula HOM05D001013 ORTHO05D004597 2.0e-22 109.4 58 82.8
Aa31LG2G15640 Aethionema arabicum HOM05D001013 ORTHO05D004597 2.6e-22 109.0 58 82.8
C09p01710 Brassica napus HOM05D001013 ORTHO05D004597 2.6e-22 109.0 58 79.3
BolC9t53105H Brassica oleracea HOM05D001013 ORTHO05D004597 2.6e-22 109.0 58 79.3
Lsat_1_v5_gn_2_97521 Lactuca sativa HOM05D001013 ORTHO05D004597 2.6e-22 109.0 91 59.3
Nitab4.5_0001800g0150 Nicotiana tabacum HOM05D001013 ORTHO05D004597 2.6e-22 109.0 63 77.8
Nitab4.5_0006994g0020 Nicotiana tabacum HOM05D001013 ORTHO05D004597 2.6e-22 109.0 63 77.8
CARHR243170 Cardamine hirsuta HOM05D001013 ORTHO05D004597 3.4e-22 108.6 58 81.0
HPP92_023576 Vanilla planifolia HOM05D001013 ORTHO05D004597 3.4e-22 108.6 63 74.6
AL7G16310 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 4.5e-22 108.2 58 81.0
AT4G34890 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 4.5e-22 108.2 58 81.0
DCAR_002067 Daucus carota HOM05D001013 ORTHO05D004597 4.5e-22 108.2 63 76.2
Solyc11g065920.2 Solanum lycopersicum HOM05D001013 ORTHO05D004597 4.5e-22 108.2 63 74.6
Sopen11g025660 Solanum pennellii HOM05D001013 ORTHO05D004597 4.5e-22 108.2 63 74.6
BcaB01g02072 Brassica carinata HOM05D001013 ORTHO05D004597 5.9e-22 107.8 58 79.3
BcaNung00646 Brassica carinata HOM05D001013 ORTHO05D004597 5.9e-22 107.8 58 81.0
A01p03620 Brassica napus HOM05D001013 ORTHO05D004597 7.6e-22 107.5 58 81.0
C01p03910 Brassica napus HOM05D001013 ORTHO05D004597 7.6e-22 107.5 58 81.0
BolC1t00384H Brassica oleracea HOM05D001013 ORTHO05D004597 7.6e-22 107.5 58 81.0
BraA01t00348Z Brassica rapa HOM05D001013 ORTHO05D004597 7.6e-22 107.5 58 81.0
Cc07_g19600 Coffea canephora HOM05D001013 ORTHO05D004597 7.6e-22 107.5 63 76.2
Carub.0007s0540 Capsella rubella HOM05D001013 ORTHO05D004597 1.0e-21 107.1 58 81.0
SGA_v2.0_scaffold247G44871 Striga asiatica HOM05D001013 ORTHO05D004597 1.0e-21 107.1 58 81.0
MBI01_g42707_MAGBIO Magnolia biondii HOM05D001013 ORTHO05D004597 1.3e-21 106.7 58 77.6
Os03g0429800 Oryza sativa ssp. japonica HOM05D001013 ORTHO05D004597 2.2e-21 105.9 63 74.6
Lj2A632G19 Lonicera japonica HOM05D001013 ORTHO05D004597 6.5e-21 104.4 63 73.0
Zm00001eb021020 Zea mays HOM05D001013 ORTHO05D004597 6.5e-21 104.4 58 77.6
unitig_90.g27489 Utricularia gibba HOM05D001013 ORTHO05D004597 1.1e-20 103.6 63 69.8
ATR0605G208 Amborella trichopoda HOM05D001013 ORTHO05D004597 7.2e-20 100.9 63 71.4
Solyc11g065930.3 Solanum lycopersicum HOM05D001013 ORTHO05D004597 7.2e-20 100.9 58 72.4
Sopen11g025670 Solanum pennellii HOM05D001013 ORTHO05D004597 7.2e-20 100.9 58 72.4
AT4G34900 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 9.3e-20 100.5 58 72.4
SEGI_18325 Sequoiadendron giganteum HOM05D001013 ORTHO05D004597 1.6e-19 99.8 58 70.7
Mapoly0014s0136 Marchantia polymorpha HOM05D001013 ORTHO05D004597 1.0e-18 97.1 63 69.8
ECA238G2169 Erigeron canadensis HOM05D001013 ORTHO05D004597 1.8e-18 96.3 58 75.9
SMO351G0580 Selaginella moellendorffii HOM05D001013 ORTHO05D004597 1.8e-18 96.3 63 66.7
AagrBONN_evm.TU.Sc2ySwM_228.138 Anthoceros agrestis HOM05D001013 ORTHO05D004597 3.0e-18 95.5 63 68.3
Pp3c20_16340 Physcomitrium patens HOM05D001013 ORTHO05D004597 8.8e-18 94.0 63 65.1
CDE05G1887 Ceratophyllum demersum HOM05D001013 ORTHO05D004597 1.3e-16 90.1 63 66.7
CBR_g30957 Chara braunii HOM05D001013 ORTHO05D004597 1.2e-14 83.6 57 61.4
arahy.Tifrunner.gnm1.ann1.V5338L Arachis hypogaea HOM05D001013 ORTHO05D004597 1.3e-13 80.1 73 57.5
PRCOL_00001493 Prasinoderma coloniale HOM05D001013 ORTHO05D004597 9.4e-12 73.9 58 60.3
MCO15G310 Micromonas commoda HOM05D001013 ORTHO05D004597 3.6e-11 72.0 58 55.2
Cfa025145 Carpinus fangiana HOM05D001013 ORTHO05D004597 1.5e-09 66.6 58 53.4
Cre12.g545101 Chlamydomonas reinhardtii HOM05D001013 ORTHO05D004597 4.8e-08 61.6 50 52.0
AL5G21530 Arabidopsis lyrata HOM05D001013 ORTHO05D001703 1.1e-07 60.5 75 40.0
AT3G43600 Arabidopsis thaliana HOM05D001013 ORTHO05D001703 1.1e-07 60.5 75 40.0
Carub.0005s0932 Capsella rubella HOM05D001013 ORTHO05D001703 7.0e-07 57.8 73 39.7
Pp3c2_20120 Physcomitrium patens HOM05D001013 ORTHO05D004597 1.2e-06 57.0 49 46.9
BcaC01g02216 Brassica carinata HOM05D001013 ORTHO05D001703 1.5e-06 56.6 75 38.7
A06p26650 Brassica napus HOM05D001013 ORTHO05D001703 1.5e-06 56.6 75 38.7
BolSC21t60234H Brassica oleracea HOM05D001013 ORTHO05D001703 1.5e-06 56.6 75 38.7
BraA06t25599Z Brassica rapa HOM05D001013 ORTHO05D001703 1.5e-06 56.6 75 38.7
HPP92_015649 Vanilla planifolia HOM05D001013 ORTHO05D001703 1.5e-06 56.6 121 31.4
Glyma.02G272400 Glycine max HOM05D001013 ORTHO05D001703 2.0e-06 56.2 75 41.3
BcaB01g01220 Brassica carinata HOM05D001013 ORTHO05D001703 3.4e-06 55.5 75 38.7
A06p22420 Brassica napus HOM05D001013 ORTHO05D001703 3.4e-06 55.5 75 38.7
ATR1126G083 Amborella trichopoda HOM05D001013 ORTHO05D004597 4.5e-06 55.1 75 38.7
BraA06t25325Z Brassica rapa HOM05D001013 ORTHO05D001703 4.5e-06 55.1 75 37.3
Ca_06134_v3 Cicer arietinum L. HOM05D001013 ORTHO05D001703 4.5e-06 55.1 47 51.1
Mapoly0046s0052 Marchantia polymorpha HOM05D001013 ORTHO05D004597 4.5e-06 55.1 50 44.0
Nn2g14475 Nelumbo nucifera HOM05D001013 ORTHO05D001703 4.5e-06 55.1 46 54.3
Psat0s2541g0120 Pisum sativum HOM05D001013 ORTHO05D001703 4.5e-06 55.1 73 38.4
Carub.0005s0947 Capsella rubella HOM05D001013 ORTHO05D001703 5.9e-06 54.7 75 38.7
Medtr5g087410 Medicago truncatula HOM05D001013 ORTHO05D001703 5.9e-06 54.7 47 51.1
Nn2g14471 Nelumbo nucifera HOM05D001013 ORTHO05D001703 5.9e-06 54.7 46 52.2
Psat2g023520 Pisum sativum HOM05D001013 ORTHO05D001703 5.9e-06 54.7 73 39.7
Sp5g17560 Schrenkiella parvula HOM05D001013 ORTHO05D001703 5.9e-06 54.7 75 37.3
SMO169G0285 Selaginella moellendorffii HOM05D001013 ORTHO05D001703 5.9e-06 54.7 43 55.8
SMO202G0031 Selaginella moellendorffii HOM05D001013 ORTHO05D001703 5.9e-06 54.7 43 55.8
TPR.G29901 Trifolium pratense HOM05D001013 ORTHO05D001703 5.9e-06 54.7 73 39.7
HPP92_015652 Vanilla planifolia HOM05D001013 ORTHO05D001703 5.9e-06 54.7 75 37.3


User provided reference genes

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