Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 0.0e+00 1528.1 762 100.0
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 0.0e+00 1521.1 762 99.6
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 0.0e+00 1205.3 763 81.0
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 0.0e+00 1173.3 763 78.1
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 0.0e+00 1143.3 767 77.2
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 0.0e+00 1080.9 762 71.7
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 3.7e-308 1061.2 759 72.2
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 1.8e-307 1058.9 760 70.3
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 1.8e-307 1058.9 757 70.7
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 5.5e-304 1047.3 759 71.1
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.2e-303 1046.2 772 68.7
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 1.5e-301 1039.3 759 69.4
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 9.7e-301 1036.6 742 72.2
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.2e-298 1029.6 759 69.6
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 4.5e-298 1027.7 766 69.3
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.7e-297 1025.8 759 68.8
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 6.5e-297 1023.8 742 71.7
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 7.2e-296 1020.4 762 68.5
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.3e-292 1009.6 763 68.9
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 8.3e-292 1006.9 764 67.8
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 7.0e-291 1003.8 761 69.1
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 1.0e-289 1000.0 756 68.7
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.3e-289 999.6 764 67.0
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 1.3e-289 999.6 761 68.2
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 2.2e-289 998.8 763 67.1
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 2.7e-287 991.9 761 67.0
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 3.6e-287 991.5 768 68.0
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 2.3e-286 988.8 769 67.4
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 6.8e-286 987.3 761 67.1
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 8.8e-286 986.9 761 66.4
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 8.8e-286 986.9 781 65.9
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 2.0e-285 985.7 770 66.8
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 2.0e-285 985.7 762 66.7
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.4e-285 984.9 773 65.8
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.3e-284 983.0 773 66.2
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 2.2e-284 982.2 762 67.5
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 4.1e-283 978.0 762 67.1
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 5.4e-283 977.6 743 68.9
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 2.7e-282 975.3 783 64.2
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 2.7e-282 975.3 762 69.0
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 1.9e-280 969.1 770 64.8
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 4.3e-280 968.0 743 65.9
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 2.1e-279 965.7 761 64.5
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.6e-279 964.9 748 66.0
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.6e-279 964.9 748 66.0
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 6.8e-278 960.7 751 65.0
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.5e-277 959.5 768 65.1
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-277 959.5 761 64.7
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 2.6e-277 958.7 754 65.9
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 3.4e-277 958.4 780 63.6
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 4.7e-271 937.9 761 63.6
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 4.9e-268 927.9 823 60.1
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 8.3e-268 927.2 780 62.7
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 8.3e-268 927.2 759 62.3
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 1.1e-267 926.8 761 62.9
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.4e-267 926.4 769 64.1
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.4e-267 925.6 770 62.9
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 2.4e-267 925.6 744 64.1
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 5.4e-267 924.5 764 62.0
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 1.6e-266 922.9 754 63.4
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 1.6e-266 922.9 760 62.2
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 3.5e-266 921.8 764 62.0
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 3.5e-266 921.8 762 64.2
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 1.0e-265 920.2 743 64.5
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.5e-264 916.4 770 62.9
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 1.9e-264 916.0 1008 51.9
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 3.1e-262 908.7 725 64.6
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 2.2e-260 902.5 744 63.2
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 3.3e-256 888.6 761 60.3
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.6e-247 859.8 748 59.8
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.7e-247 858.2 736 60.7
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.1e-246 857.1 744 59.8
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.1e-246 857.1 758 58.8
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 8.9e-246 854.0 761 60.3
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 1.2e-245 853.6 755 58.7
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 5.8e-245 851.3 654 67.0
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 5.8e-245 851.3 745 59.7
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.7e-242 842.4 730 61.0
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 2.7e-242 842.4 791 57.4
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 1.5e-240 836.6 754 58.9
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 2.8e-239 832.4 963 50.4
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.4e-238 830.1 750 58.7
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 6.9e-238 827.8 757 58.1
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 2.9e-236 822.4 762 57.6
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 1.1e-235 820.5 757 57.7
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 3.9e-233 812.0 781 56.9
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.5e-229 800.0 863 51.3
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.1e-227 793.9 754 55.8
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.4e-227 792.7 756 55.7
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 4.2e-227 792.0 625 65.4
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 4.2e-227 792.0 768 54.6
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 1.0e-225 787.3 705 58.3
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 1.3e-223 780.4 653 62.6
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 3.1e-222 775.8 754 54.8
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 4.8e-215 751.9 770 53.4
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.8e-201 706.8 508 73.0
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 1.0e-193 681.0 625 59.2
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.3e-191 671.8 614 60.1
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 4.7e-178 629.0 593 57.3
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 8.3e-175 618.2 762 46.6
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 6.1e-170 602.1 731 46.5
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 5.9e-165 585.5 790 41.9
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 2.9e-159 566.6 748 43.6
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 7.3e-147 525.4 388 67.5
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 3.8e-127 459.9 409 58.4
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.6e-123 446.0 657 41.2
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 3.2e-110 403.7 741 37.8
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.2e-109 401.7 484 45.5
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.3e-108 398.3 482 45.6
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 2.4e-105 387.5 465 45.8
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-99 368.2 328 60.7
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.8e-90 337.4 294 62.2
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 1.2e-88 332.0 316 55.7
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.4e-86 325.1 259 64.9
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 2.2e-82 311.2 1030 27.4
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 1.6e-77 295.0 227 67.8
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 3.6e-77 293.9 188 73.4
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 8.2e-74 282.7 283 56.2
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 1.2e-64 252.3 160 76.9
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 9.4e-62 242.7 390 40.8
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.2e-60 236.9 291 42.6
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 6.1e-53 213.4 160 61.2
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 7.5e-51 206.5 750 26.3
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.0e-47 196.1 124 76.6
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.1e-44 184.5 158 55.1
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 4.4e-43 180.6 284 45.1
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.0e-39 169.5 172 55.8
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.4e-28 132.5 214 39.3
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.6e-24 119.0 100 62.0
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 3.9e-23 114.4 214 32.2
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 1.9e-22 112.1 119 52.9
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.5e-22 111.7 103 54.4
Actinidia11567 Actinidia chinensis HOM05D005074 ORTHO05D006853 2.4e-20 105.1 75 72.0
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 7.6e-19 100.1 64 78.1
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 3.6e-13 81.3 64 57.8
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 8.1e-13 80.1 123 33.3
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 5.3e-12 77.4 167 31.1
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 7.6e-11 73.6 54 63.0
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 1.7e-10 72.4 163 29.4
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 8.4e-10 70.1 168 25.0
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.1e-09 69.7 210 30.0
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.3e-07 62.0 47 57.4
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 2.3e-07 62.0 51 58.8


User provided reference genes

Program Settings