Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 5.2e-87 324.3 161 100.0
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.3e-66 255.8 161 81.4
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 2.4e-63 245.7 144 86.8
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.2e-62 243.4 146 82.9
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 3.4e-62 241.9 146 83.6
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 6.4e-61 237.7 146 80.1
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 7.8e-59 230.7 147 78.9
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.0e-58 230.3 146 75.3
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 2.3e-58 229.2 146 77.4
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.5e-57 226.5 146 78.1
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 1.5e-57 226.5 145 77.2
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.5e-57 226.5 146 77.4
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.5e-57 226.5 146 77.4
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 3.3e-57 225.3 146 76.0
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 4.3e-57 224.9 146 77.4
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 7.3e-57 224.2 146 76.7
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 7.3e-57 224.2 146 76.0
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 9.6e-57 223.8 145 77.2
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 9.6e-57 223.8 146 78.1
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.6e-56 223.0 146 74.7
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 2.8e-56 222.2 146 77.4
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 3.6e-56 221.9 146 73.3
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 6.2e-56 221.1 146 76.0
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.8e-55 219.5 146 75.3
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 3.1e-55 218.8 146 74.7
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 4.0e-55 218.4 144 74.3
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 4.0e-55 218.4 146 74.0
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 1.2e-54 216.9 146 73.3
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 2.0e-54 216.1 168 69.0
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 2.6e-54 215.7 146 73.3
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 2.6e-54 215.7 146 74.0
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 2.6e-54 215.7 143 74.1
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 3.4e-54 215.3 146 74.7
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 5.8e-54 214.5 145 72.4
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 7.6e-54 214.2 144 72.9
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 9.9e-54 213.8 145 73.1
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.3e-53 213.4 146 71.9
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 2.2e-53 212.6 146 73.3
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 3.8e-53 211.8 146 71.9
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 8.4e-53 210.7 146 71.9
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.4e-52 209.9 143 72.7
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 1.9e-52 209.5 146 70.5
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.9e-52 209.5 146 69.9
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 3.2e-52 208.8 146 70.5
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 4.2e-52 208.4 146 71.2
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 5.4e-52 208.0 146 69.2
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 7.1e-52 207.6 146 71.9
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 9.3e-52 207.2 146 71.2
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 1.2e-51 206.8 146 69.2
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.6e-51 206.5 146 67.8
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 1.6e-51 206.5 146 71.9
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 1.6e-51 206.5 144 72.2
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.1e-51 206.1 146 71.2
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 2.7e-51 205.7 144 72.2
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.7e-51 205.7 144 72.2
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 2.7e-51 205.7 146 71.2
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 2.7e-51 205.7 146 71.2
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 3.5e-51 205.3 144 68.8
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 7.9e-51 204.1 144 70.8
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 1.0e-50 203.8 146 69.2
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 1.8e-50 203.0 145 69.7
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.3e-50 202.6 144 70.8
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 3.9e-50 201.8 144 70.8
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 3.9e-50 201.8 146 71.2
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 8.7e-50 200.7 146 66.4
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 8.7e-50 200.7 146 69.9
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.1e-49 200.3 146 69.9
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 5.6e-49 198.0 146 67.8
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 7.4e-49 197.6 146 67.1
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 7.4e-49 197.6 134 74.6
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 9.6e-49 197.2 146 67.8
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 1.3e-48 196.8 144 67.4
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 3.7e-48 195.3 147 66.7
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 4.8e-48 194.9 143 67.1
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 4.8e-48 194.9 150 64.7
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 6.2e-48 194.5 147 66.7
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 1.4e-47 193.4 146 67.8
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 1.8e-47 193.0 147 66.7
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 1.8e-47 193.0 146 68.5
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 3.1e-47 192.2 204 53.4
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 4.0e-47 191.8 143 67.8
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 9.0e-47 190.7 146 64.4
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 9.0e-47 190.7 146 64.4
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 9.0e-47 190.7 146 64.4
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 3.4e-46 188.7 155 61.3
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.3e-45 186.8 143 65.7
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 2.9e-45 185.7 146 62.3
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.8e-45 185.3 147 62.6
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.6e-43 179.9 111 82.0
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 4.6e-43 178.3 147 61.9
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 7.9e-43 177.6 146 62.3
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.0e-42 177.2 146 62.3
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.6e-40 169.9 158 55.1
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.4e-39 166.0 157 56.7
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 5.5e-36 154.8 151 56.3
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 7.1e-36 154.5 146 61.0
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.2e-35 153.7 146 59.6
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 2.7e-35 152.5 149 56.4
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.8e-34 149.8 162 49.4
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 2.3e-34 149.4 148 52.7
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.6e-32 143.3 111 67.6
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 1.8e-31 139.8 118 58.5
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 1.2e-30 137.1 144 54.2
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 7.2e-28 127.9 145 46.9
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 9.3e-28 127.5 147 42.2
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 2.3e-26 122.9 160 40.0
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 3.9e-26 122.1 147 44.2
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 7.4e-25 117.9 146 46.6
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 2.0e-17 93.2 160 34.4
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.9e-13 79.3 69 53.6
SHI03977 Sapria himalayana HOM05D004944 ORTHO05D005989 2.4e-07 59.7 116 35.3


User provided reference genes

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