Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.3e-74 280.0 133 100.0
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.6e-71 270.8 133 97.0
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-69 266.5 133 94.7
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.5e-44 181.8 142 70.4
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-21 107.1 55 94.5
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.3e-18 95.5 51 92.2
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 9.5e-18 94.0 51 88.2
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 1.2e-17 93.6 51 88.2
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 1.2e-17 93.6 51 88.2
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 1.2e-17 93.6 51 88.2
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 2.1e-17 92.8 53 83.0
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.8e-17 92.4 51 86.3
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.8e-17 92.4 51 86.3
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.8e-17 92.4 53 81.1
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 2.8e-17 92.4 51 86.3
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 2.8e-17 92.4 51 88.2
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 3.6e-17 92.0 51 86.3
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 4.7e-17 91.7 51 86.3
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 4.7e-17 91.7 51 86.3
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 6.1e-17 91.3 51 86.3
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 8.0e-17 90.9 51 84.3
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 8.0e-17 90.9 51 84.3
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 8.0e-17 90.9 51 84.3
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 8.0e-17 90.9 51 86.3
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 1.0e-16 90.5 51 84.3
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.0e-16 90.5 51 84.3
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 1.0e-16 90.5 51 84.3
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.4e-16 90.1 51 84.3
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 1.4e-16 90.1 51 82.4
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 1.4e-16 90.1 51 84.3
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 1.8e-16 89.7 51 84.3
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 1.8e-16 89.7 51 82.4
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.8e-16 89.7 51 86.3
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.8e-16 89.7 51 86.3
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 2.3e-16 89.4 51 86.3
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 2.3e-16 89.4 51 84.3
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 2.3e-16 89.4 51 82.4
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 2.3e-16 89.4 51 86.3
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 5.2e-16 88.2 51 86.3
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 5.2e-16 88.2 51 84.3
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 5.2e-16 88.2 51 84.3
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 5.2e-16 88.2 51 84.3
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 6.8e-16 87.8 53 77.4
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 6.8e-16 87.8 51 82.4
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 6.8e-16 87.8 51 82.4
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 8.9e-16 87.4 51 84.3
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 8.9e-16 87.4 51 82.4
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 8.9e-16 87.4 51 80.4
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 8.9e-16 87.4 51 80.4
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 8.9e-16 87.4 51 84.3
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 8.9e-16 87.4 51 84.3
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 1.2e-15 87.0 51 78.4
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.5e-15 86.7 51 80.4
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.5e-15 86.7 51 80.4
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.5e-15 86.7 51 80.4
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 2.0e-15 86.3 51 80.4
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 2.0e-15 86.3 51 80.4
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.0e-15 86.3 51 84.3
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 2.0e-15 86.3 51 80.4
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.6e-15 85.9 54 77.8
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 2.6e-15 85.9 51 82.4
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 5.7e-15 84.7 51 78.4
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 5.7e-15 84.7 51 78.4
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 5.7e-15 84.7 51 80.4
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 5.7e-15 84.7 51 80.4
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 5.7e-15 84.7 51 80.4
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 5.7e-15 84.7 51 80.4
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 5.7e-15 84.7 51 76.5
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 5.7e-15 84.7 51 78.4
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 5.7e-15 84.7 51 80.4
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 7.5e-15 84.3 53 75.5
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 7.5e-15 84.3 51 78.4
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 7.5e-15 84.3 51 80.4
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 7.5e-15 84.3 51 80.4
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 9.8e-15 84.0 51 80.4
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 9.8e-15 84.0 51 78.4
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 9.8e-15 84.0 51 76.5
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.3e-14 83.6 51 78.4
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.3e-14 83.6 51 78.4
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.7e-14 83.2 51 76.5
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 1.7e-14 83.2 51 78.4
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 2.2e-14 82.8 51 76.5
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 2.2e-14 82.8 52 76.9
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 2.8e-14 82.4 51 74.5
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 3.7e-14 82.0 60 66.7
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 3.7e-14 82.0 51 76.5
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 3.7e-14 82.0 51 78.4
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 4.9e-14 81.6 51 76.5
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 6.3e-14 81.3 51 74.5
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 6.3e-14 81.3 51 76.5
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 6.3e-14 81.3 51 74.5
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 8.3e-14 80.9 51 74.5
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.1e-13 80.5 51 74.5
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-13 80.1 52 76.9
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 1.4e-13 80.1 124 37.9
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.4e-13 80.1 51 74.5
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.4e-13 80.1 51 76.5
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.8e-13 79.7 51 74.5
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.8e-13 79.7 51 74.5
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.4e-13 79.3 51 72.5
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.2e-13 79.0 51 72.5
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 5.4e-13 78.2 51 74.5
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 5.4e-13 78.2 51 74.5
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 5.4e-13 78.2 51 74.5
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 5.4e-13 78.2 51 74.5
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 5.4e-13 78.2 51 74.5
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 5.4e-13 78.2 51 74.5
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 5.4e-13 78.2 51 74.5
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 5.4e-13 78.2 51 74.5
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 5.4e-13 78.2 51 74.5
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 5.4e-13 78.2 51 72.5
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 7.0e-13 77.8 51 70.6
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 7.0e-13 77.8 51 72.5
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 7.0e-13 77.8 51 72.5
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 7.0e-13 77.8 51 72.5
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 7.0e-13 77.8 51 72.5
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.0e-13 77.8 51 74.5
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 9.2e-13 77.4 52 75.0
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 9.2e-13 77.4 52 75.0
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 9.2e-13 77.4 51 72.5
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 1.2e-12 77.0 51 72.5
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 1.2e-12 77.0 52 75.0
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 1.2e-12 77.0 52 75.0
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.2e-12 77.0 51 72.5
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 1.6e-12 76.6 51 74.5
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.6e-12 76.6 51 70.6
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.6e-12 76.6 51 68.6
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.0e-12 76.3 51 72.5
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 2.0e-12 76.3 51 70.6
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 2.0e-12 76.3 51 70.6
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 2.7e-12 75.9 51 70.6
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 2.7e-12 75.9 50 72.0
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 3.5e-12 75.5 52 69.2
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 3.5e-12 75.5 52 69.2
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 3.5e-12 75.5 52 69.2
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.5e-12 75.5 52 71.2
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 4.5e-12 75.1 52 71.2
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 4.5e-12 75.1 52 71.2
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 4.5e-12 75.1 52 71.2
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 4.5e-12 75.1 52 69.2
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 1.0e-11 73.9 51 66.7
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.0e-11 73.9 51 68.6
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.0e-11 73.9 51 72.5
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 1.3e-11 73.6 52 67.3
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 2.3e-11 72.8 52 69.2
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 2.3e-11 72.8 52 69.2
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 2.9e-11 72.4 52 67.3
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 2.9e-11 72.4 52 67.3
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 2.9e-11 72.4 52 67.3
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 8.6e-11 70.9 51 64.7
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 8.6e-11 70.9 51 66.7
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 1.1e-10 70.5 54 66.7
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.1e-10 70.5 51 62.7
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 4.3e-10 68.6 51 68.6
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 7.3e-10 67.8 51 66.7
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.6e-09 66.6 51 60.8
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 2.8e-09 65.9 51 54.9
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.6e-09 65.5 51 54.9
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 1.4e-08 63.5 51 56.9
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.4e-08 63.5 51 54.9
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 1.8e-08 63.2 51 58.8
vmacro17535 Vaccinium macrocarpon HOM05D003031 ORTHO05D003371 1.8e-08 63.2 59 54.2
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.1e-08 62.4 51 52.9
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.0e-08 62.0 52 59.6
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.4e-07 58.9 42 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 5.8e-07 58.2 51 51.0


User provided reference genes

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