Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 0.0e+00 1526.5 762 100.0
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 0.0e+00 1521.1 762 99.6
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 0.0e+00 1209.1 763 81.3
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 0.0e+00 1177.5 763 78.4
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 0.0e+00 1147.1 767 77.4
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 0.0e+00 1084.7 762 71.9
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 5.7e-309 1063.9 759 72.3
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 1.7e-308 1062.4 757 70.9
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 2.4e-307 1058.5 760 70.3
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 5.0e-305 1050.8 759 71.4
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 8.5e-305 1050.0 772 68.9
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 8.0e-303 1043.5 759 69.7
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 2.0e-301 1038.9 742 72.4
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 8.2e-300 1033.5 759 69.8
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.6e-298 1029.2 759 69.0
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 1.0e-297 1026.5 766 69.2
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.2e-297 1025.4 742 71.8
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 5.0e-297 1024.2 762 68.8
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.2e-293 1013.1 763 69.2
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 2.2e-292 1008.8 764 67.9
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 7.0e-291 1003.8 756 68.9
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 9.1e-291 1003.4 761 68.5
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 1.6e-290 1002.7 763 67.4
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 3.5e-290 1001.5 761 69.0
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.7e-289 999.2 764 67.0
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.9e-288 995.7 761 67.3
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 2.5e-288 995.3 768 68.2
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 2.1e-287 992.3 769 67.6
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 4.7e-287 991.1 761 67.4
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 6.1e-287 990.7 781 66.2
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.3e-286 988.8 773 66.1
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 5.2e-286 987.6 761 66.4
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.2e-285 986.5 770 66.9
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-285 986.1 773 66.4
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 1.5e-285 986.1 762 66.7
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.3e-284 983.0 762 67.5
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 1.8e-283 979.2 783 64.5
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 3.1e-283 978.4 743 68.9
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 3.1e-283 978.4 762 67.1
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 7.0e-283 977.2 762 69.2
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 1.3e-281 973.0 770 65.1
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 8.6e-281 970.3 761 64.8
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 5.6e-280 967.6 743 65.9
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.6e-279 964.9 748 66.0
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.6e-279 964.9 748 66.0
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.0e-278 963.4 761 64.9
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.4e-278 963.0 768 65.4
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 2.3e-278 962.2 780 63.8
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 6.8e-278 960.7 754 66.0
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 1.2e-277 959.9 751 65.0
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 5.6e-272 941.0 761 63.9
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 4.4e-269 931.4 759 62.6
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 1.3e-268 929.9 761 63.2
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 2.2e-268 929.1 780 62.8
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 2.9e-268 928.7 769 64.2
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 3.7e-268 928.3 764 62.3
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 4.9e-268 927.9 770 63.0
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 4.9e-268 927.9 744 64.2
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.1e-267 926.8 823 60.1
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 1.1e-267 926.8 760 62.5
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 2.4e-267 925.6 754 63.5
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.4e-267 925.6 764 62.3
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 5.4e-267 924.5 762 64.3
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 2.0e-266 922.5 743 64.6
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 1.7e-265 919.5 1008 52.1
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 2.5e-264 915.6 770 62.7
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 5.2e-262 907.9 725 64.4
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 2.9e-260 902.1 744 63.2
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 4.3e-256 888.3 761 60.2
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.5e-248 863.2 748 60.0
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.3e-248 860.9 736 60.9
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 9.6e-248 860.5 744 60.1
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 9.6e-248 860.5 758 59.1
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 1.1e-246 857.1 755 58.9
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 5.2e-246 854.7 654 67.3
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 5.2e-246 854.7 761 60.3
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.2e-245 853.6 745 59.9
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 5.4e-243 844.7 791 57.5
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 7.1e-243 844.3 730 61.1
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 1.0e-241 840.5 754 59.2
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 2.5e-240 835.9 963 50.6
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 2.8e-239 832.4 750 58.8
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 1.4e-238 830.1 757 58.3
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 5.8e-237 824.7 762 57.7
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 2.2e-236 822.8 757 57.9
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 2.7e-234 815.8 781 57.1
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.4e-230 803.5 863 51.6
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 3.8e-228 795.4 754 56.0
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 6.4e-228 794.7 768 54.7
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 8.4e-228 794.3 625 65.6
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 8.4e-228 794.3 756 55.8
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 3.5e-226 788.9 705 58.4
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 3.3e-224 782.3 653 62.8
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.4e-222 776.9 754 54.9
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 3.3e-216 755.7 770 53.6
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 6.1e-202 708.4 508 73.2
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 2.1e-194 683.3 625 59.4
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.7e-191 672.5 614 60.1
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 3.2e-179 632.9 609 56.5
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 4.8e-175 619.0 762 46.6
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 3.2e-171 606.3 731 46.8
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 4.5e-165 585.9 790 41.9
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 5.7e-160 568.9 748 43.7
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 1.9e-147 527.3 388 67.8
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 2.6e-128 463.8 409 58.9
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.7e-124 448.7 657 41.4
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.2e-110 403.7 484 45.7
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 2.1e-109 401.0 741 37.7
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.5e-109 400.2 482 45.9
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 6.2e-106 389.4 465 46.0
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-99 368.2 328 60.7
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.8e-90 337.4 294 62.2
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 4.1e-89 333.6 316 56.0
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.8e-87 327.0 259 65.3
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 3.7e-82 310.5 1030 27.4
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 1.6e-77 295.0 227 67.8
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 3.6e-77 293.9 188 73.4
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 8.2e-74 282.7 283 56.2
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 1.2e-64 252.3 160 76.9
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 2.5e-62 244.6 390 41.0
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.2e-60 236.9 291 42.6
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 8.0e-53 213.0 160 61.2
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 1.3e-50 205.7 747 26.6
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 3.5e-48 197.6 124 77.4
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 6.1e-45 186.8 158 55.7
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 1.2e-43 182.6 284 45.4
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 2.7e-40 171.4 172 56.4
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 8.1e-29 133.3 186 42.5
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.2e-24 119.4 100 62.0
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 3.0e-23 114.8 214 32.2
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 5.1e-23 114.0 119 53.8
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.9e-22 112.1 103 54.4
Actinidia11567 Actinidia chinensis HOM05D005074 ORTHO05D006853 2.4e-20 105.1 75 72.0
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 7.6e-19 100.1 64 78.1
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 3.6e-13 81.3 64 57.8
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 8.1e-13 80.1 123 33.3
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 5.3e-12 77.4 167 31.1
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 7.6e-11 73.6 54 63.0
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 1.7e-10 72.4 163 29.4
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 8.4e-10 70.1 168 25.0
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.1e-09 69.7 210 29.0
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.3e-07 62.0 47 57.4
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 2.3e-07 62.0 51 58.8


User provided reference genes

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