Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 2.3e-128 462.2 233 100.0
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 2.5e-34 149.8 76 94.7
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 2.5e-34 149.8 76 94.7
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 6.7e-27 125.2 74 78.4
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 1.3e-22 110.9 74 71.6
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 8.5e-22 108.2 74 70.3
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 1.9e-21 107.1 74 64.9
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 4.2e-21 105.9 74 66.2
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 1.6e-20 104.0 74 64.9
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 2.1e-20 103.6 74 66.2
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 4.7e-20 102.4 74 66.2
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.7e-20 102.4 151 45.7
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.7e-20 102.4 151 45.7
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 8.0e-20 101.7 145 45.5
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 3.0e-19 99.8 75 68.0
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 3.0e-19 99.8 74 63.5
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 3.0e-19 99.8 74 67.6
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 3.9e-19 99.4 74 63.5
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 5.2e-19 99.0 77 66.2
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 6.7e-19 98.6 74 64.9
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 6.7e-19 98.6 77 64.9
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 6.7e-19 98.6 77 64.9
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 1.1e-18 97.8 74 64.9
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 1.1e-18 97.8 74 64.9
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 1.1e-18 97.8 74 64.9
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 1.1e-18 97.8 74 64.9
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 1.5e-18 97.4 75 65.3
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 2.0e-18 97.1 105 54.3
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 2.0e-18 97.1 74 63.5
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 2.6e-18 96.7 75 64.0
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 2.6e-18 96.7 78 61.5
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 3.3e-18 96.3 75 64.0
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 4.4e-18 95.9 105 54.3
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 4.4e-18 95.9 76 63.2
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 5.7e-18 95.5 75 64.0
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 5.7e-18 95.5 76 63.2
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 9.7e-18 94.7 77 62.3
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 9.7e-18 94.7 75 64.0
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 1.3e-17 94.4 77 62.3
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 1.7e-17 94.0 71 63.4
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 2.2e-17 93.6 162 41.4
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 2.8e-17 93.2 76 64.5
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 3.7e-17 92.8 79 57.0
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 3.7e-17 92.8 75 64.0
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 8.2e-17 91.7 75 66.7
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 8.2e-17 91.7 108 49.1
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 8.2e-17 91.7 74 63.5
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 1.1e-16 91.3 75 66.7
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 1.1e-16 91.3 77 59.7
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 1.1e-16 91.3 75 62.7
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 1.4e-16 90.9 108 49.1
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 1.4e-16 90.9 108 49.1
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 2.4e-16 90.1 74 59.5
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 2.4e-16 90.1 75 62.7
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 2.4e-16 90.1 74 59.5
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 2.4e-16 90.1 75 65.3
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 3.1e-16 89.7 110 50.9
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 3.1e-16 89.7 74 59.5
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 4.1e-16 89.4 74 60.8
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 5.3e-16 89.0 75 61.3
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 9.1e-16 88.2 109 52.3
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 9.1e-16 88.2 75 60.0
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 1.2e-15 87.8 100 51.0
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 2.0e-15 87.0 74 55.4
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 2.0e-15 87.0 74 56.8
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 7.7e-15 85.1 74 58.1
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 7.7e-15 85.1 74 54.1
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 1.0e-14 84.7 77 55.8
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 1.3e-14 84.3 75 58.7
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 1.7e-14 84.0 107 50.5
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 2.2e-14 83.6 106 49.1
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 2.2e-14 83.6 74 60.8
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 8.5e-14 81.6 74 58.1
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 1.1e-13 81.3 73 53.4
CSS0042261 Camellia sinensis var. sinensis HOM05D014951 ORTHO05D013045 2.5e-13 80.1 78 52.6
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.5e-13 80.1 75 52.0
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 3.2e-13 79.7 67 65.7
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 4.2e-13 79.3 67 65.7
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 5.5e-13 79.0 69 50.7
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 3.0e-11 73.2 59 49.2
CSS0026648 Camellia sinensis var. sinensis HOM05D017771 ORTHO05D013045 3.0e-11 73.2 57 57.9
CSS0022480 Camellia sinensis var. sinensis HOM05D017771 ORTHO05D013045 8.8e-11 71.6 61 52.5
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 8.8e-11 71.6 71 59.2
CSS0017728 Camellia sinensis var. sinensis HOM05D017771 ORTHO05D013045 2.0e-10 70.5 56 55.4
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 3.3e-10 69.7 91 48.4
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 4.4e-10 69.3 77 46.8
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 5.7e-10 68.9 75 49.3
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 7.5e-10 68.6 59 49.2
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 7.5e-10 68.6 134 38.1
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 1.3e-09 67.8 73 53.4
CSS0009477 Camellia sinensis var. sinensis HOM05D014951 ORTHO05D013045 2.2e-09 67.0 76 50.0
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 3.7e-09 66.2 73 52.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 4.8e-09 65.9 73 50.7
CSS0003893 Camellia sinensis var. sinensis HOM05D014951 ORTHO05D013045 6.3e-09 65.5 78 43.6
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 8.2e-09 65.1 149 30.9
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 1.4e-08 64.3 66 53.0
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 1.4e-08 64.3 60 55.0
CSS0001128 Camellia sinensis var. sinensis HOM05D017771 ORTHO05D111383 2.4e-08 63.5 66 43.9
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 3.1e-08 63.2 66 53.0
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 3.1e-08 63.2 66 53.0
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 3.1e-08 63.2 66 53.0
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 3.1e-08 63.2 66 53.0
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 4.1e-08 62.8 63 58.7
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 7.0e-08 62.0 62 53.2
CSS0010442 Camellia sinensis var. sinensis HOM05D020540 ORTHO05D013045 7.0e-08 62.0 59 54.2
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 9.1e-08 61.6 72 47.2
CSS0034230 Camellia sinensis var. sinensis HOM05D017771 ORTHO05D111785 1.6e-07 60.8 68 51.5
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 2.0e-07 60.5 60 51.7
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 3.5e-07 59.7 131 38.2
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 4.5e-07 59.3 59 49.2
CSS0006768 Camellia sinensis var. sinensis HOM05D020540 ORTHO05D013045 1.3e-06 57.8 50 56.0
CSS0026714 Camellia sinensis var. sinensis HOM05D020540 ORTHO05D013045 2.2e-06 57.0 50 56.0
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 6.5e-06 55.5 72 47.2
CSS0025609 Camellia sinensis var. sinensis HOM05D017771 ORTHO05D112288 8.5e-06 55.1 46 58.7


User provided reference genes

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