Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.5e-87 325.5 174 100.0
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.1e-69 265.4 173 72.8
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.7e-67 259.6 174 70.7
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 3.0e-64 248.8 173 68.8
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.9e-64 248.4 177 69.5
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 6.3e-62 241.1 177 69.5
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 2.4e-61 239.2 174 77.0
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.2e-60 236.9 180 62.8
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.2e-60 236.9 180 62.8
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.2e-60 236.9 175 64.0
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.0e-60 236.1 185 71.4
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 4.5e-60 235.0 175 63.4
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.3e-59 233.4 180 62.2
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 3.8e-59 231.9 175 62.9
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.1e-58 230.3 176 62.5
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.5e-58 229.2 176 63.6
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.2e-57 226.9 173 63.0
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.6e-57 226.5 196 66.3
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 3.6e-57 225.3 196 66.3
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 6.1e-57 224.6 176 61.9
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 7.9e-57 224.2 174 60.9
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.8e-56 223.0 178 60.7
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 3.0e-56 222.2 174 59.2
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 8.8e-56 220.7 179 60.3
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.0e-55 219.5 196 63.8
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.6e-55 219.2 169 61.5
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 4.4e-55 218.4 174 58.0
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.8e-54 215.7 181 56.9
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 3.7e-54 215.3 175 58.3
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 3.7e-54 215.3 175 57.7
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 3.7e-54 215.3 173 59.5
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.7e-54 215.3 173 59.5
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 3.7e-54 215.3 178 57.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 4.8e-54 214.9 175 57.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 6.3e-54 214.5 174 60.9
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.1e-53 213.8 173 60.1
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 2.4e-53 212.6 173 60.1
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.4e-53 212.6 173 60.1
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.1e-53 212.2 173 59.5
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 4.1e-53 211.8 176 58.0
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.2e-52 210.3 171 57.9
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.6e-52 209.1 176 58.0
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.5e-52 208.4 177 57.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.9e-52 208.0 173 56.1
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 7.7e-52 207.6 173 55.5
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.0e-51 207.2 176 56.2
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 6.5e-51 204.5 173 55.5
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.5e-50 202.6 202 50.5
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 3.2e-50 202.2 202 51.5
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 5.5e-50 201.4 174 55.2
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 5.5e-50 201.4 174 55.2
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 7.2e-50 201.1 132 67.4
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 9.4e-50 200.7 173 57.8
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.2e-49 200.3 118 74.6
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.2e-49 200.3 173 58.4
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.6e-49 199.9 173 56.1
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 3.6e-49 198.7 170 57.1
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.1e-49 198.0 173 52.6
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 6.1e-49 198.0 133 67.7
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.0e-48 197.2 122 73.8
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.8e-48 196.4 173 53.2
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 2.3e-48 196.1 129 69.0
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.3e-48 196.1 177 54.8
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 3.0e-48 195.7 169 54.4
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 6.7e-48 194.5 133 66.9
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 2.0e-47 193.0 131 64.1
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 5.7e-47 191.4 130 67.7
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 7.4e-47 191.0 124 67.7
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 9.7e-47 190.7 121 66.9
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 9.7e-47 190.7 173 53.8
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 9.7e-47 190.7 130 63.8
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.7e-46 189.9 177 50.8
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.7e-46 189.9 177 50.8
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.7e-46 189.9 123 69.9
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.7e-46 188.7 131 62.6
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 4.8e-46 188.3 125 65.6
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 6.3e-46 188.0 131 62.6
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.3e-46 188.0 114 69.3
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 8.2e-46 187.6 132 64.4
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 8.2e-46 187.6 126 65.1
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 8.2e-46 187.6 126 66.7
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-45 186.8 130 62.3
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.4e-45 186.8 173 53.8
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.8e-45 186.4 128 63.3
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.8e-45 186.4 112 73.2
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 2.4e-45 186.0 124 66.1
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 3.1e-45 185.7 125 64.0
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 4.1e-45 185.3 128 64.1
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.0e-45 184.5 132 62.9
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.6e-44 183.3 130 61.5
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-44 183.3 134 59.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.6e-44 182.6 132 63.6
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 4.5e-44 181.8 135 60.0
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 4.5e-44 181.8 135 60.0
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 4.5e-44 181.8 129 61.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 7.7e-44 181.0 129 61.2
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.3e-43 180.3 136 61.0
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.7e-43 179.9 123 64.2
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 2.2e-43 179.5 134 59.7
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 2.2e-43 179.5 114 69.3
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 2.9e-43 179.1 123 63.4
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 2.9e-43 179.1 117 66.7
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 3.8e-43 178.7 133 58.6
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 3.8e-43 178.7 133 57.9
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 3.8e-43 178.7 133 57.9
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 3.8e-43 178.7 133 57.9
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 3.8e-43 178.7 133 57.9
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 8.5e-43 177.6 133 60.9
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.1e-42 177.2 125 64.0
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.1e-42 177.2 132 61.4
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 1.1e-42 177.2 133 59.4
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.5e-42 176.8 132 58.3
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.5e-42 176.8 132 58.3
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.5e-42 176.8 132 58.3
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 3.2e-42 175.6 135 57.8
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.2e-41 173.7 124 62.1
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.2e-41 173.7 131 59.5
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.1e-41 172.9 132 60.6
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 2.7e-41 172.6 167 49.1
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.7e-41 172.6 173 55.5
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 4.7e-41 171.8 128 59.4
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.0e-40 170.6 124 59.7
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 114 64.9
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 114 64.0
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 2.3e-40 169.5 164 49.4
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.2e-40 168.3 120 61.7
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 6.7e-40 167.9 168 48.8
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.5e-39 166.8 119 61.3
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 7.5e-39 164.5 124 58.1
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.7e-39 164.1 114 60.5
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 8.2e-38 161.0 183 46.4
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 8.2e-38 161.0 120 59.2
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.6e-36 156.8 120 57.5
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.2e-35 152.9 124 53.2
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 6.5e-35 151.4 129 53.5
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.9e-34 149.8 109 58.7
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 4.2e-34 148.7 132 53.0
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 5.5e-34 148.3 114 58.8
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.6e-33 146.7 125 54.4
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.7e-33 146.0 121 53.7
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 2.7e-33 146.0 125 49.6
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.4e-32 143.7 115 55.7
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-31 140.6 102 57.8
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 2.8e-30 136.0 116 54.3
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 3.1e-29 132.5 95 60.0
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.6e-28 130.2 96 61.5
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 4.5e-28 128.6 123 46.3
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 5.9e-28 128.3 111 52.3
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.3e-27 127.1 110 58.2
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.7e-27 126.7 93 61.3
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 3.3e-26 122.5 109 54.1
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.1e-25 119.8 84 59.5
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 1.0e-24 117.5 120 45.0
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.4e-24 117.1 112 46.4
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.2e-23 114.0 119 47.9
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 5.7e-23 111.7 121 45.5
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 5.7e-23 111.7 121 45.5
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 7.5e-23 111.3 118 44.1
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.8e-22 109.4 121 50.4
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.9e-22 108.6 109 45.9
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.3e-22 107.8 107 48.6
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 3.1e-21 105.9 121 43.0
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.1e-21 105.9 73 64.4
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.0e-20 103.2 76 57.9
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.3e-18 94.7 66 59.1
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.4e-16 90.5 125 40.0
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.8e-16 90.1 60 65.0
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 1.8e-13 80.1 89 41.6
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 3.0e-11 72.8 106 37.7
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 4.7e-09 65.5 72 40.3
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 8.0e-09 64.7 37 67.6
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 4.0e-08 62.4 45 60.0


User provided reference genes

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