Gene: Sopen09g031340

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g031340
  • Transcript Identifier Sopen09g031340.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 79732687-79733170 : negative

Gene Family Information

  • ID HOM05D004187
  • #Genes/#Species 169/82
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g031340.1

Descriptions

  • Description Encodes RNA-DIRECTED DNA METHYLATION 1 (RDM1), forming a complex with DMS3 (AT3G49250) and DRD1 (AT2G16390). This complex is termed DDR. The DDR complex is required for polymerase V transcripts and RNA-directed DNA methylation. | RNA-DIRECTED DNA METHYLATION 1 (RDM1) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1950
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0044030
IEA
InterProregulation of DNA methylation
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT3G22680
GO:0070918
ISO
PLAZA Integrative Orthologyproduction of small RNA involved in gene silencing by RNA AT3G22680

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G22680
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT3G22680

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0000419
ISO
PLAZA Integrative OrthologyRNA polymerase V complex AT3G22680

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036319 RDM1 superfamily
IPR015270 Protein RDM1, plant
Mapman id Description
12.5.1.14.3 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component RDM1