Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.7e-144 515.4 268 100.0
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 9.2e-129 463.8 267 91.0
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.0e-128 462.6 267 91.0
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 1.9e-121 439.5 270 85.9
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.1e-117 426.0 277 82.3
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 8.9e-116 420.6 274 83.9
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 8.9e-116 420.6 270 82.2
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 2.0e-115 419.5 273 81.3
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 9.8e-115 417.2 274 79.9
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.7e-114 416.4 272 83.1
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 1.7e-114 416.4 278 80.6
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.1e-113 413.7 276 82.6
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 1.1e-113 413.7 270 80.0
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.4e-113 413.3 278 80.2
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 4.1e-113 411.8 271 82.3
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.1e-112 409.5 261 84.3
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 2.1e-112 409.5 275 79.6
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 4.6e-112 408.3 273 80.2
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 6.0e-112 407.9 276 81.2
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.0e-111 407.1 270 82.6
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.3e-111 406.8 276 79.3
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 2.3e-111 406.0 269 81.0
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 3.0e-111 405.6 276 79.0
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.0e-111 405.6 276 78.6
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.0e-111 405.6 274 80.3
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.0e-111 405.6 276 78.6
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.9e-111 405.2 274 80.3
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 5.1e-111 404.8 274 79.2
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 5.1e-111 404.8 267 80.5
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 8.6e-111 404.1 269 81.4
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 8.6e-111 404.1 275 78.9
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.5e-110 403.3 274 79.6
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.5e-110 403.3 274 79.9
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 1.9e-110 402.9 273 78.0
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 2.5e-110 402.5 273 79.1
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.5e-110 402.5 274 79.6
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 2.5e-110 402.5 277 78.7
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 4.3e-110 401.7 271 80.8
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 5.6e-110 401.4 270 78.1
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 5.6e-110 401.4 274 78.8
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 7.3e-110 401.0 274 78.8
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 7.3e-110 401.0 273 79.5
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 7.3e-110 401.0 277 78.3
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 7.3e-110 401.0 272 78.7
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 1.2e-109 400.2 275 78.5
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 6.2e-109 397.9 269 79.9
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 8.1e-109 397.5 257 83.7
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 1.1e-108 397.1 275 79.3
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.1e-108 397.1 274 79.9
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.4e-108 396.7 280 77.5
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.4e-108 396.7 278 76.3
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.8e-108 396.4 275 77.1
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.1e-108 395.6 274 78.5
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 4.0e-108 395.2 281 77.2
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 5.2e-108 394.8 281 77.6
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 1.2e-107 393.7 272 77.2
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 1.2e-107 393.7 281 77.6
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 5.8e-107 391.3 278 78.1
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 5.8e-107 391.3 278 78.1
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 5.8e-107 391.3 270 80.0
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 5.8e-107 391.3 270 80.0
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.3e-106 390.2 276 79.3
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.3e-106 390.2 271 78.6
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.7e-106 389.8 272 77.9
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 1.7e-106 389.8 281 76.9
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.9e-106 389.0 271 78.6
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 7.1e-105 384.4 273 77.7
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 9.2e-105 384.0 276 78.3
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.6e-104 383.3 269 77.0
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 2.7e-104 382.5 272 76.8
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.5e-104 382.1 273 77.3
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 7.8e-104 380.9 280 75.0
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.0e-103 380.6 275 75.6
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.3e-103 380.2 272 77.2
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.3e-103 380.2 272 76.5
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 3.0e-103 379.0 271 77.9
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 3.9e-103 378.6 272 75.7
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 5.1e-103 378.3 271 72.0
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.1e-102 377.1 269 76.6
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 2.5e-102 375.9 270 77.0
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 2.5e-102 375.9 269 76.2
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 2.5e-102 375.9 269 76.2
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 2.5e-102 375.9 269 76.2
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 2.5e-102 375.9 270 77.0
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 2.5e-102 375.9 269 76.2
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 2.5e-102 375.9 268 77.2
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 5.6e-102 374.8 270 77.4
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 5.6e-102 374.8 270 77.0
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 5.6e-102 374.8 270 77.0
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 5.6e-102 374.8 275 77.1
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 7.3e-102 374.4 269 76.2
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 7.3e-102 374.4 269 77.0
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 7.3e-102 374.4 273 75.8
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 9.5e-102 374.0 272 77.9
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.2e-101 373.6 270 76.7
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.2e-101 373.6 276 76.4
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 1.2e-101 373.6 275 76.4
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 4.7e-101 371.7 268 76.9
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 4.7e-101 371.7 270 76.7
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 4.7e-101 371.7 232 83.6
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 6.2e-101 371.3 269 76.2
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 8.1e-101 370.9 270 75.6
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.1e-100 370.5 272 74.6
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.4e-100 370.2 276 76.4
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.4e-100 370.2 278 73.4
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 5.2e-100 368.2 276 76.4
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 6.8e-100 367.9 270 76.3
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.5e-99 366.7 273 74.0
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 3.4e-99 365.5 265 75.8
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 9.9e-99 364.0 271 74.5
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.3e-98 363.6 250 78.0
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.2e-98 362.8 277 72.6
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.2e-97 359.0 197 90.4
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 3.2e-97 359.0 281 73.0
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 5.4e-97 358.2 273 72.5
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.5e-94 349.4 215 83.3
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 9.9e-91 337.4 192 88.0
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.4e-84 316.2 242 74.4
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 4.0e-84 315.5 215 74.4
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 2.6e-83 312.8 197 79.7
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 8.4e-82 307.8 285 63.5
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 8.7e-79 297.7 226 69.0
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 8.7e-79 297.7 168 88.1
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 4.8e-77 292.0 193 82.9
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 2.7e-72 276.2 194 79.4
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 6.9e-68 261.5 161 83.9
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.6e-64 250.4 134 94.0
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 2.5e-62 243.0 202 72.3
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 5.7e-62 241.9 162 74.1
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 2.0e-54 216.9 165 66.1
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 7.7e-51 204.9 274 51.5
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 6.7e-47 191.8 149 75.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.1e-44 184.5 232 52.6
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.5e-43 179.5 123 74.8
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.2e-40 171.0 96 85.4
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.0e-36 155.2 211 45.5
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.0e-36 155.2 211 45.5
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.6e-22 110.2 81 77.8
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 8.6e-18 95.1 111 56.8
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 3.5e-11 73.2 141 34.0
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 3.9e-10 69.7 183 29.5
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.6e-08 63.2 38 78.9
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 4.0e-07 59.7 94 47.9
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 4.0e-07 59.7 60 48.3


User provided reference genes

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