Gene: Solyc06g060340.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g060340.3
  • Transcript Identifier Solyc06g060340.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 36000891-36002657 : positive

Gene Family Information

  • ID HOM05D005358
  • #Genes/#Species 142/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g060340.3.1
  • uniprot P54773
  • gene_id Solyc06g060340

Descriptions

  • Description Photosystem II 22 kDa protein, chloroplastic (AHRD V3.3 *** A0A1U8GV91_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010114
ISO
PLAZA Integrative Orthologyresponse to red light Os04g0690800
GO:0009637
ISO
PLAZA Integrative Orthologyresponse to blue light Os04g0690800
GO:0010027
ISO
PLAZA Integrative Orthologythylakoid membrane organization AT1G44575
GO:0009644
ISO
PLAZA Integrative Orthologyresponse to high light intensity Os01g0869800
GO:0080167
ISO
PLAZA Integrative Orthologyresponse to karrikin AT1G44575
GO:0010196
ISO
PLAZA Integrative Orthologynonphotochemical quenching AT1G44575
GO:0015979
IEA
GOA Databasephotosynthesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019904
ISO
PLAZA Integrative Orthologyprotein domain specific binding AT1G44575
GO:0016168
ISO
PLAZA Integrative Orthologychlorophyll binding AT1G44575
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G44575
GO:0051738
ISO
PLAZA Integrative Orthologyxanthophyll binding AT1G44575

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid AT1G44575
GO:0009517
ISO
PLAZA Integrative OrthologyPSII associated light-harvesting complex II AT1G44575
GO:0009535
IBA
IEA
GOA Databasechloroplast thylakoid membrane
GO:0009579
IEA
GOA Databasethylakoid
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0009507
IEA
GOA Databasechloroplast
GO:0009536
IEA
GOA Databaseplastid
GO:0009523
IEA
GOA Databasephotosystem II

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023329 Chlorophyll a/b binding domain superfamily
IPR022796 Chlorophyll A-B binding protein
Mapman id Description
1.1.1.5.3.1.1 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.pH-sensor protein (PsbS)