Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 0.0e+00 1461.0 746 100.0
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1152.9 781 76.4
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 2.0e-306 1055.4 821 69.7
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.1e-299 1033.1 828 65.9
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 2.9e-297 1025.0 825 66.1
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 4.1e-296 1021.1 733 74.5
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 9.2e-296 1020.0 819 65.9
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 2.4e-291 1005.4 820 64.5
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 8.9e-291 1003.4 815 67.1
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.8e-284 981.9 822 62.8
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 1.4e-283 979.5 817 63.0
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 2.9e-281 971.8 820 63.2
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 6.4e-281 970.7 821 63.5
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 8.4e-281 970.3 822 62.3
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 4.6e-279 964.5 822 62.0
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 1.3e-278 963.0 822 62.4
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 9.9e-274 946.8 820 62.3
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 1.9e-272 942.6 821 61.4
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 2.4e-272 942.2 823 61.4
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 5.4e-272 941.0 821 61.5
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 9.3e-272 940.3 824 62.3
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.0e-271 937.6 820 62.0
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 1.3e-270 936.4 819 60.7
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 3.0e-270 935.3 820 62.3
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.9e-270 934.9 820 61.7
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 5.1e-270 934.5 797 62.6
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 4.3e-269 931.4 820 61.2
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 4.8e-268 927.9 822 61.2
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 1.1e-267 926.8 820 61.3
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 1.4e-267 926.4 820 61.2
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 4.5e-266 921.4 818 60.6
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.0e-265 920.2 820 60.0
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.3e-265 919.8 820 61.0
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 2.2e-265 919.1 832 59.3
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.9e-265 917.9 863 60.5
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.4e-264 916.4 818 60.1
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 5.5e-264 914.4 845 59.5
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.9e-261 906.0 826 58.8
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 3.3e-261 905.2 818 60.1
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 4.3e-261 904.8 819 60.9
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 3.7e-260 901.7 837 58.2
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 3.7e-260 901.7 828 58.0
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 3.1e-259 898.7 824 58.9
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 3.1e-259 898.7 793 59.1
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.2e-258 896.7 832 57.0
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 8.4e-257 890.6 832 57.9
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 3.2e-256 888.6 827 57.9
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 9.3e-256 887.1 821 59.0
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.7e-255 885.6 742 64.7
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 2.3e-254 882.5 819 58.7
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.7e-254 880.9 820 59.6
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.5e-253 879.8 845 58.1
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 9.7e-253 877.1 827 57.8
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 5.3e-251 871.3 812 59.4
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 5.3e-251 871.3 817 57.8
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 9.0e-251 870.5 828 57.0
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 9.4e-248 860.5 808 58.8
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 2.7e-247 859.0 823 57.5
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 3.0e-246 855.5 803 57.9
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 8.8e-246 854.0 825 58.4
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 2.5e-245 852.4 808 58.2
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 3.3e-245 852.0 882 54.3
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 7.4e-245 850.9 824 55.3
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.1e-243 847.0 813 57.4
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 4.1e-243 845.1 803 57.8
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 9.1e-243 844.0 813 57.6
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 5.9e-242 841.3 759 58.1
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 1.2e-239 833.6 803 57.7
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 1.4e-238 830.1 807 56.8
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 2.6e-237 825.9 830 55.8
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 2.8e-236 822.4 795 56.2
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 7.0e-235 817.8 823 53.9
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 7.0e-235 817.8 823 54.1
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 9.1e-235 817.4 821 53.8
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.2e-234 817.0 824 54.0
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 3.5e-234 815.5 824 54.7
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 5.9e-234 814.7 804 53.9
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 7.7e-234 814.3 807 56.8
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.3e-233 813.5 823 53.5
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 5.0e-233 811.6 804 53.7
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 4.2e-232 808.5 849 52.2
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 1.4e-230 803.5 824 53.3
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 8.0e-223 777.7 612 66.3
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.0e-223 777.7 618 67.5
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.0e-223 777.7 618 67.5
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 1.2e-218 763.8 923 48.4
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.2e-217 759.6 622 66.1
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 5.0e-217 758.4 795 52.5
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 9.4e-216 754.2 553 70.7
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 1.6e-215 753.4 820 52.1
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.8e-209 732.3 711 54.9
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 9.8e-205 717.6 620 62.6
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.4e-195 687.2 621 58.8
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 3.0e-193 679.5 758 50.3
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.8e-182 643.7 781 48.8
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 3.1e-182 642.9 720 51.7
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 3.1e-174 616.3 543 59.7
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-166 590.9 491 65.4
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 1.2e-165 587.8 397 77.6
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 8.1e-159 565.1 765 43.4
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 5.3e-158 562.4 825 40.6
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.4e-150 537.7 722 43.2
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.1e-144 518.1 536 51.5
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 2.5e-139 500.4 464 55.2
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.0e-132 478.4 394 66.0
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 6.1e-130 469.2 409 61.9
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 2.0e-112 411.0 475 50.5
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.8e-97 361.3 457 45.1
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 2.6e-96 357.5 788 34.1
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.4e-96 357.1 365 56.7
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.5e-91 341.7 347 53.6
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.6e-91 339.7 344 53.5
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 4.7e-90 336.7 276 65.6
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.8e-89 334.7 343 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 3.7e-87 327.0 775 33.2
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 2.2e-79 301.2 659 34.3
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.0e-68 264.2 282 51.1
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 4.0e-57 227.3 238 51.7
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 8.7e-52 209.5 278 44.6
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.6e-50 205.3 168 65.5
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 4.0e-49 200.7 176 61.9
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.9e-49 199.9 168 63.7
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 9.0e-49 199.5 234 53.8
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 4.5e-48 197.2 168 58.9
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 1.7e-47 195.3 850 25.3
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.9e-47 193.7 161 58.4
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.2e-45 189.1 238 46.6
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.6e-40 169.9 145 58.6
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.3e-39 169.1 161 55.3
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.9e-38 165.2 144 58.3
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 6.2e-34 150.2 320 31.6
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.1e-33 147.9 219 38.4
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 9.7e-27 126.3 161 48.4
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.5e-19 101.7 211 28.9
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-15 89.7 118 37.3
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 6.9e-09 67.0 63 57.1
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 7.7e-08 63.5 63 55.6


User provided reference genes

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