Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043056 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 2.7e-32 141.4 69 100.0
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 2.7e-16 88.2 51 82.4
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 1.1e-14 82.8 52 71.2
Lj9A448G34 Lonicera japonica HOM05D001734 ORTHO05D003483 1.9e-14 82.0 51 76.5
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 5.6e-14 80.5 51 72.5
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 1.6e-13 79.0 51 72.5
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 2.1e-13 78.6 51 70.6
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 2.8e-13 78.2 51 74.5
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 3.6e-13 77.8 51 66.7
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 3.6e-13 77.8 52 69.2
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 4.8e-13 77.4 51 68.6
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 6.2e-13 77.0 56 66.1
TAR629G1256 Trochodendron aralioides HOM05D001734 ORTHO05D003483 6.2e-13 77.0 45 80.0
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 1.8e-12 75.5 66 60.6
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 1.8e-12 75.5 66 60.6
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 2.4e-12 75.1 66 60.6
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.4e-12 75.1 66 60.6
FAN20G1174 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.4e-12 75.1 66 60.6
FAN20G1266 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.4e-12 75.1 66 60.6
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 3.1e-12 74.7 65 56.9
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 3.1e-12 74.7 51 68.6
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 3.1e-12 74.7 45 71.1
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 4.0e-12 74.3 46 71.7
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 4.0e-12 74.3 51 64.7
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 4.0e-12 74.3 51 64.7
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 4.0e-12 74.3 45 77.8
CAN.G1305.19 Capsicum annuum HOM05D001734 ORTHO05D003483 9.0e-12 73.2 51 68.6
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 9.0e-12 73.2 52 65.4
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 9.0e-12 73.2 46 69.6
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 1.2e-11 72.8 46 65.2
Ca_16176_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.2e-11 72.8 45 66.7
Psat5g114800 Pisum sativum HOM05D001734 ORTHO05D003483 1.2e-11 72.8 45 68.9
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 1.2e-11 72.8 66 57.6
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 1.5e-11 72.4 45 75.6
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 2.0e-11 72.0 51 66.7
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 2.6e-11 71.6 51 64.7
arahy.Tifrunner.gnm1.ann1.0L1HI6 Arachis hypogaea HOM05D001734 ORTHO05D003483 3.4e-11 71.2 45 71.1
Cpa.g.sc76.53 Carica papaya HOM05D001734 ORTHO05D003483 3.4e-11 71.2 46 69.6
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 3.4e-11 71.2 45 68.9
Nitab4.5_0000984g0090 Nicotiana tabacum HOM05D001734 ORTHO05D003483 3.4e-11 71.2 45 75.6
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 3.4e-11 71.2 65 55.4
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 4.5e-11 70.9 51 66.7
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 4.5e-11 70.9 52 61.5
FAN05G4580 Fragaria x ananassa HOM05D001734 ORTHO05D003483 5.8e-11 70.5 67 59.7
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 7.6e-11 70.1 46 69.6
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 7.6e-11 70.1 51 60.8
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 1.3e-10 69.3 45 73.3
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 1.3e-10 69.3 45 73.3
Solyc03g112950.4 Solanum lycopersicum HOM05D001734 ORTHO05D003483 1.3e-10 69.3 45 73.3
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 1.3e-10 69.3 45 73.3
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 1.7e-10 68.9 51 60.8
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 2.2e-10 68.6 65 53.8
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 2.2e-10 68.6 65 53.8
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 2.2e-10 68.6 51 58.8
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 2.9e-10 68.2 51 58.8
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 3.8e-10 67.8 46 69.6
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 3.8e-10 67.8 51 60.8
VMungo1309G1151 Vigna mungo HOM05D001734 ORTHO05D003483 3.8e-10 67.8 48 66.7
Hund02744 Selenicereus undatus HOM05D001734 ORTHO05D003483 4.9e-10 67.4 46 63.0
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 6.4e-10 67.0 46 67.4
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 1.1e-09 66.2 65 52.3
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 1.9e-09 65.5 46 63.0
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 3.2e-09 64.7 45 62.2
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 3.2e-09 64.7 45 64.4
HPP92_004868 Vanilla planifolia HOM05D001734 ORTHO05D003483 3.2e-09 64.7 51 56.9
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 4.2e-09 64.3 46 63.0
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 5.4e-09 63.9 46 60.9
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 1.2e-08 62.8 46 60.9
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 1.2e-08 62.8 46 60.9
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 1.6e-08 62.4 51 58.8
TPR.G6034 Trifolium pratense HOM05D001734 ORTHO05D003483 2.1e-08 62.0 41 65.9
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 6.0e-08 60.5 45 62.2
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 7.9e-08 60.1 51 54.9
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 7.9e-08 60.1 65 46.2
unitig_0.g1441 Utricularia gibba HOM05D001734 ORTHO05D003483 2.3e-07 58.5 51 52.9
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 3.0e-07 58.2 50 54.0


User provided reference genes

Program Settings