Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 0.0e+00 2190.6 1132 100.0
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 0.0e+00 1494.9 1161 69.2
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1464.1 1125 68.7
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 0.0e+00 1461.0 1072 71.5
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 0.0e+00 1281.2 1146 60.5
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1236.9 1191 58.7
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1228.0 1140 58.2
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1203.7 1151 58.1
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1193.7 1153 57.0
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1182.5 1147 57.5
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1162.1 1177 56.2
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 0.0e+00 1136.3 1151 55.3
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 0.0e+00 1124.8 1201 53.5
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 0.0e+00 1124.8 1150 54.7
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 0.0e+00 1120.5 1186 53.6
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 0.0e+00 1119.8 1144 54.8
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 0.0e+00 1117.1 1170 54.5
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 0.0e+00 1092.8 1149 54.4
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 0.0e+00 1090.5 1098 56.1
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 0.0e+00 1089.7 1238 52.4
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 0.0e+00 1085.9 1178 52.7
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 0.0e+00 1080.9 1151 52.7
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 0.0e+00 1077.8 1200 52.1
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 2.0e-310 1069.3 1162 52.2
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 7.2e-308 1060.8 1175 52.7
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 3.0e-306 1055.4 1018 57.2
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 2.2e-304 1049.3 1181 51.6
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 4.1e-303 1045.0 1018 56.7
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.8e-298 1029.6 1178 50.8
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 3.7e-296 1021.9 1082 54.3
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 7.0e-295 1017.7 1143 51.2
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 7.0e-295 1017.7 1147 50.1
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 2.0e-294 1016.1 1154 51.4
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 2.5e-292 1009.2 1180 50.4
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 1.4e-290 1003.4 1182 50.2
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 2.3e-290 1002.7 1268 48.5
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 5.7e-289 998.0 1153 50.9
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 1.3e-288 996.9 913 59.4
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 4.1e-287 991.9 1149 50.1
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 7.7e-286 987.6 1191 49.9
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 4.4e-281 971.8 1075 52.0
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 5.7e-281 971.5 1179 49.0
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 9.7e-281 970.7 1186 48.1
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 4.1e-279 965.3 1109 50.7
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 5.3e-279 964.9 1184 48.1
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 6.5e-277 958.0 1127 49.2
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 8.5e-277 957.6 1188 47.2
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 5.5e-276 954.9 1158 49.5
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.6e-275 953.4 1245 46.7
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 8.0e-275 951.0 1175 48.3
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.8e-274 949.9 1214 46.7
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 4.0e-274 948.7 1190 48.1
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 7.5e-273 944.5 1186 48.6
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 3.7e-272 942.2 1275 45.3
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 9.1e-271 937.6 1165 49.3
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.5e-268 930.2 1133 47.6
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 4.2e-268 928.7 1203 46.1
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 2.1e-267 926.4 1136 48.4
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 8.0e-267 924.5 1311 44.0
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.8e-266 923.3 1249 45.0
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 5.2e-266 921.8 1089 49.8
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 6.8e-266 921.4 1181 46.7
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.2e-264 916.4 1145 46.4
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 2.8e-264 916.0 1074 49.8
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 3.7e-264 915.6 1085 50.5
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.4e-263 913.7 649 71.0
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 1.3e-261 907.1 1187 45.7
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 2.9e-261 906.0 1293 44.9
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 6.6e-261 904.8 1188 46.0
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 1.2e-259 900.6 1101 48.7
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 6.8e-258 894.8 1137 49.2
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 4.4e-257 892.1 1174 47.2
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 4.4e-257 892.1 1174 47.2
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 1.3e-256 890.6 1230 45.1
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.7e-256 890.2 1267 44.0
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 2.3e-253 879.8 1089 48.6
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 8.6e-253 877.9 1166 45.9
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 9.5e-252 874.4 1244 43.8
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 2.8e-251 872.8 1143 45.8
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 2.8e-251 872.8 1158 46.3
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 4.7e-251 872.1 1179 45.5
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 1.1e-250 870.9 1091 48.1
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 9.8e-249 864.4 1283 44.0
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 3.2e-247 859.4 1135 46.4
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 7.0e-247 858.2 1172 45.2
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 7.0e-247 858.2 1169 45.8
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 3.0e-245 852.8 1160 45.4
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 8.6e-245 851.3 1147 47.3
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 1.1e-244 850.9 1160 45.3
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.3e-244 848.2 1245 43.5
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.2e-243 847.4 513 87.7
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 5.6e-236 822.0 1136 45.4
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.2e-235 820.8 1083 48.5
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 8.7e-229 798.1 1109 44.5
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 9.6e-228 794.7 675 59.1
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.6e-222 777.3 639 63.2
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.9e-220 770.4 1011 46.7
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.4e-218 764.2 1016 47.1
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 9.9e-217 758.1 587 75.3
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 4.2e-215 752.7 1079 44.0
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 2.0e-209 733.8 1082 42.8
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 5.5e-207 725.7 1092 42.8
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 4.6e-198 696.0 640 57.7
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.1e-196 691.4 943 46.4
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 2.1e-190 670.6 886 46.7
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 7.7e-185 652.1 1137 39.1
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 1.7e-184 651.0 747 50.3
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.6e-182 644.4 828 47.0
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.7e-179 634.4 970 40.7
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 4.4e-172 609.8 638 53.9
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.6e-166 591.3 714 48.6
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.3e-149 534.3 796 43.8
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.5e-148 531.6 429 64.1
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.5e-127 461.8 1007 36.0
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 1.9e-127 461.5 1007 36.0
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 4.1e-122 443.7 1110 33.3
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 8.9e-117 426.0 758 39.6
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.6e-116 424.5 341 64.2
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 4.6e-113 413.7 745 35.6
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 3.4e-108 397.5 656 38.3
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 5.8e-108 396.7 313 66.8
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.1e-98 365.9 780 35.3
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.3e-94 352.4 335 57.3
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 8.4e-91 339.7 305 62.0
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 5.5e-82 310.5 267 59.9
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.6e-68 265.0 356 43.0
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.3e-63 248.1 471 38.6
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 4.8e-62 244.2 408 36.3
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 2.5e-34 152.1 272 37.1
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.7e-27 129.4 528 26.5
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 3.0e-27 128.6 293 30.4
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 8.0e-25 120.6 279 32.6
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.8e-17 95.5 271 33.2
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 5.6e-10 71.2 58 58.6
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 2.1e-09 69.3 136 36.0
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 3.1e-08 65.5 145 37.2


User provided reference genes

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