Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 4.6e-164 581.3 312 100.0
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 9.7e-122 440.7 316 76.9
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 2.8e-121 439.1 319 74.3
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 4.5e-119 431.8 267 84.3
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 1.4e-117 426.8 316 74.7
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 4.2e-117 425.2 312 75.6
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 9.4e-117 424.1 308 75.6
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 3.6e-116 422.2 316 74.1
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 1.4e-115 420.2 316 74.1
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 2.3e-115 419.5 316 72.5
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 3.0e-115 419.1 313 75.4
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 9.7e-114 414.1 312 71.8
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 1.7e-113 413.3 316 74.1
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 1.7e-113 413.3 315 73.0
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 4.8e-113 411.8 312 73.4
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.4e-112 410.2 309 73.5
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 1.8e-112 409.8 301 72.4
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 3.1e-112 409.1 315 73.0
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 1.2e-111 407.1 312 71.5
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 5.9e-111 404.8 269 76.2
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 1.3e-110 403.7 272 78.7
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 2.9e-110 402.5 313 72.2
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 3.8e-110 402.1 313 72.2
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 5.0e-110 401.7 311 73.3
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 8.5e-110 401.0 411 59.1
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.9e-109 399.8 303 71.0
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 2.5e-109 399.4 273 78.4
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 7.2e-109 397.9 273 80.2
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 1.2e-108 397.1 299 72.9
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 2.1e-108 396.4 270 78.9
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 2.7e-108 396.0 311 73.6
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 2.7e-108 396.0 270 78.9
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 6.1e-108 394.8 309 72.5
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 7.9e-108 394.4 309 71.5
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 7.9e-108 394.4 270 77.4
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 7.9e-108 394.4 313 70.9
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 1.0e-107 394.0 268 76.1
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.4e-107 393.7 303 71.3
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.8e-107 393.3 314 74.2
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 1.8e-107 393.3 324 69.1
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.0e-107 392.5 321 67.0
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 1.1e-106 390.6 318 67.0
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 1.1e-106 390.6 276 73.6
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 1.5e-106 390.2 321 70.4
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 1.5e-106 390.2 276 73.6
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 2.0e-106 389.8 301 72.8
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 7.4e-106 387.9 289 70.6
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 9.7e-106 387.5 312 69.9
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 9.7e-106 387.5 308 71.4
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 2.8e-105 386.0 275 74.2
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 1.1e-104 384.0 320 68.8
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 4.1e-104 382.1 249 81.1
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 4.1e-104 382.1 304 72.4
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 4.1e-104 382.1 249 82.7
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 5.3e-104 381.7 313 68.7
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 5.9e-103 378.3 299 71.9
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 5.0e-102 375.2 274 74.1
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 1.1e-101 374.0 274 73.0
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 3.2e-101 372.5 319 66.1
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 9.4e-101 370.9 320 68.1
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 3.6e-100 369.0 308 70.1
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 8.0e-100 367.9 247 75.7
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 2.3e-99 366.3 267 72.7
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 2.3e-99 366.3 293 67.9
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 4.0e-99 365.5 314 67.5
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 5.2e-99 365.2 312 66.3
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 5.2e-99 365.2 313 66.1
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 6.7e-99 364.8 329 64.7
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 6.7e-99 364.8 307 66.4
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 1.5e-98 363.6 311 69.5
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 1.5e-98 363.6 305 66.9
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 1.7e-97 360.1 315 62.9
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 1.7e-97 360.1 301 63.8
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 2.2e-97 359.8 319 64.9
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 3.7e-97 359.0 309 66.7
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 6.3e-97 358.2 234 79.1
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 4.1e-96 355.5 315 63.5
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 5.3e-96 355.1 274 70.1
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 3.5e-95 352.4 312 64.4
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 7.7e-95 351.3 293 65.2
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 1.7e-94 350.1 252 72.2
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 5.0e-94 348.6 304 65.5
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 8.5e-94 347.8 304 67.1
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 1.5e-93 347.1 272 69.5
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 5.5e-93 345.1 332 61.7
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 9.4e-93 344.4 290 65.9
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 1.2e-92 344.0 226 80.1
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 1.6e-92 343.6 332 61.4
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 3.0e-91 339.3 250 70.0
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 7.5e-90 334.7 304 59.5
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 3.7e-89 332.4 269 68.0
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 2.4e-88 329.7 228 72.8
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.2e-87 327.4 233 77.7
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 1.6e-87 327.0 225 74.2
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 2.7e-87 326.2 234 73.1
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 3.5e-87 325.9 313 62.3
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 4.2e-85 318.9 185 87.0
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 9.5e-85 317.8 319 62.1
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 1.6e-84 317.0 228 75.9
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 6.1e-84 315.1 249 66.3
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 8.0e-84 314.7 316 60.4
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 1.6e-76 290.4 314 58.0
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 4.9e-73 278.9 261 64.8
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 9.2e-72 274.6 287 57.5
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 1.7e-70 270.4 257 58.0
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 3.3e-69 266.2 187 77.0
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 2.0e-63 246.9 221 64.3
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 3.0e-62 243.0 253 52.2
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 2.6e-58 229.9 207 62.8
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 2.2e-57 226.9 251 49.8
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 8.3e-57 224.9 251 53.0
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 1.7e-54 217.2 192 59.4
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 2.4e-48 196.8 162 71.0
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 2.1e-44 183.7 173 51.4
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 3.1e-43 179.9 128 69.5
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 2.1e-39 167.2 125 67.2
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 3.1e-35 153.3 192 53.6
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 1.3e-30 137.9 98 70.4
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 2.1e-28 130.6 120 60.0
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 9.0e-27 125.2 238 37.0
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 2.0e-26 124.0 103 70.9
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.6e-23 114.4 78 75.6
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 1.2e-18 98.2 68 63.2
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 1.0e-17 95.1 106 53.8
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 1.0e-17 95.1 107 54.2
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 6.0e-15 85.9 81 59.3
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 3.7e-12 76.6 65 67.7
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 6.9e-11 72.4 161 42.9
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 7.6e-10 68.9 65 61.5
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 3.8e-09 66.6 178 37.6
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 5.0e-09 66.2 35 77.1
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 2.7e-07 60.5 170 36.5
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 7.9e-07 58.9 46 71.7
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 1.3e-06 58.2 49 65.3


User provided reference genes

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