Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041829 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 2.5e-40 168.3 84 100.0
CSS0008394 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 3.6e-31 137.9 89 85.4
CSS0005440 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 2.7e-18 95.1 124 52.4
CSS0001316 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 7.3e-16 87.0 62 75.8
CSS0016441 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 3.6e-15 84.7 62 74.2
Dinv38300 Davidia involucrata HOM05D000319 ORTHO05D000903 5.4e-11 70.9 62 61.3
vmacro15243 Vaccinium macrocarpon HOM05D000319 ORTHO05D000903 7.1e-11 70.5 62 59.7
Rhsim02G0011200 Rhododendron simsii HOM05D000319 ORTHO05D000903 2.7e-10 68.6 62 61.3
Duzib151G0607 Durio zibethinus HOM05D000319 ORTHO05D000903 7.8e-10 67.0 62 58.1
Rhsim02G0010100 Rhododendron simsii HOM05D000319 ORTHO05D000903 7.8e-10 67.0 62 59.7
Rhsim02G0011700 Rhododendron simsii HOM05D000319 ORTHO05D000903 7.8e-10 67.0 59 61.0
Nitab4.5_0012427g0010 Nicotiana tabacum HOM05D000319 ORTHO05D000903 1.3e-09 66.2 57 61.4
Peaxi162Scf01067g00032 Petunia axillaris HOM05D000319 ORTHO05D000903 1.3e-09 66.2 52 67.3
Sopen01g028880 Solanum pennellii HOM05D000319 ORTHO05D000903 1.7e-09 65.9 62 58.1
GSVIVG01017740001 Vitis vinifera HOM05D000319 ORTHO05D000903 4.3e-08 61.2 61 54.1
Oeu023293.3 Olea europaea HOM05D000319 ORTHO05D000903 7.3e-08 60.5 53 58.5
CANSAT78G1438 Cannabis sativa HOM05D000319 ORTHO05D000903 9.6e-08 60.1 53 56.6
Nitab4.5_0001697g0110 Nicotiana tabacum HOM05D000319 ORTHO05D000903 9.6e-08 60.1 53 50.9
Atru.chr4.2808 Acer truncatum HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
arahy.Tifrunner.gnm1.ann1.18U4K7 Arachis hypogaea HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
arahy.Tifrunner.gnm1.ann1.A4TJW4 Arachis hypogaea HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
arahy.Tifrunner.gnm1.ann1.C5NHEB Arachis hypogaea HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
arahy.Tifrunner.gnm1.ann1.D3FQJ1 Arachis hypogaea HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
CSS0003266 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
CSS0007353 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
CSS0022272 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Ca_02417_v3 Cicer arietinum L. HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Dinv38301 Davidia involucrata HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Glyma.07G249100 Glycine max HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Glyma.09G046500 Glycine max HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Glyma.15G154000 Glycine max HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Glyma.17G025200 Glycine max HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Lj6g0024853 Lotus japonicus HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Lalb_Chr12g0196521 Lupinus albus HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Lalb_Chr20g0114481 Lupinus albus HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Medtr2g437390 Medicago truncatula HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Phvul.009G246300 Phaseolus vulgaris HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
VMungo1309G1220 Vigna mungo HOM05D000319 ORTHO05D000903 1.2e-07 59.7 53 56.6
Duzib052G0656 Durio zibethinus HOM05D000319 ORTHO05D000903 1.6e-07 59.3 62 50.0
Phvul.003G103300 Phaseolus vulgaris HOM05D000319 ORTHO05D000903 1.6e-07 59.3 53 56.6
RcHm_v2.0_Chr4g0421701 Rosa chinensis HOM05D000319 ORTHO05D000903 1.6e-07 59.3 53 56.6
TPR.G35032 Trifolium pratense HOM05D000319 ORTHO05D000903 1.6e-07 59.3 53 56.6
VMungo1215G2210 Vigna mungo HOM05D000319 ORTHO05D000903 1.6e-07 59.3 53 56.6
CAN.G556.9 Capsicum annuum HOM05D000319 ORTHO05D000903 2.1e-07 58.9 53 56.6
Prupe.1G138700 Prunus persica HOM05D000319 ORTHO05D000903 2.1e-07 58.9 53 56.6
Manes.03G193200 Manihot esculenta HOM05D000319 ORTHO05D000903 2.8e-07 58.5 53 56.6
Oeu021104.2 Olea europaea HOM05D000319 ORTHO05D000903 2.8e-07 58.5 60 50.0
Sopen01g028920 Solanum pennellii HOM05D000319 ORTHO05D012272 2.8e-07 58.5 62 48.4
Aqoxy2G03040 Aquilegia oxysepala HOM05D000319 ORTHO05D000903 3.6e-07 58.2 62 51.6
CiPaw.01G150100 Carya illinoinensis HOM05D000319 ORTHO05D000903 3.6e-07 58.2 52 57.7
HanXRQChr13g0409831 Helianthus annuus HOM05D000319 ORTHO05D000903 3.6e-07 58.2 53 56.6
Lsat_1_v5_gn_5_49221 Lactuca sativa HOM05D000319 ORTHO05D000903 3.6e-07 58.2 53 56.6
MSTRG.10084 Avicennia marina HOM05D000319 ORTHO05D000903 4.7e-07 57.8 55 52.7
CiPaw.02G084200 Carya illinoinensis HOM05D000319 ORTHO05D000903 4.7e-07 57.8 52 57.7
ClCG06G005250 Citrullus lanatus HOM05D000319 ORTHO05D000903 4.7e-07 57.8 53 54.7
MELO3C021345.2 Cucumis melo HOM05D000319 ORTHO05D000903 4.7e-07 57.8 53 54.7
CsaV3_6G017300 Cucumis sativus L. HOM05D000319 ORTHO05D000903 4.7e-07 57.8 53 54.7
PSO210G6328 Papaver somniferum HOM05D000319 ORTHO05D000903 4.7e-07 57.8 52 57.7
PSO832G1154 Papaver somniferum HOM05D000319 ORTHO05D000903 4.7e-07 57.8 52 57.7
TAR633G1636 Trochodendron aralioides HOM05D000319 ORTHO05D000903 4.7e-07 57.8 52 55.8
arahy.Tifrunner.gnm1.ann1.5LU64F Arachis hypogaea HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 52.8
Cc03_g02030 Coffea canephora HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Dinv44395 Davidia involucrata HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Migut.G00178 Erythranthe guttata HOM05D000319 ORTHO05D000903 6.2e-07 57.4 52 57.7
HanXRQChr03g0079981 Helianthus annuus HOM05D000319 ORTHO05D000903 6.2e-07 57.4 52 57.7
Manes.15G013800 Manihot esculenta HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Nitab4.5_0003256g0030 Nicotiana tabacum HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Nitab4.5_0005595g0010 Nicotiana tabacum HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Oeu021106.1 Olea europaea HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Oeu021107.1 Olea europaea HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Potri.008G217300 Populus trichocarpa HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Potri.008G224075 Populus trichocarpa HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Potri.010G023800 Populus trichocarpa HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Sabra08G0154600 Salix brachista HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Sabra10G0015100 Salix brachista HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Sed0007113 Sechium edule HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Sed0016240 Sechium edule HOM05D000319 ORTHO05D000903 6.2e-07 57.4 53 54.7
Duzib151G0035 Durio zibethinus HOM05D000319 ORTHO05D000903 8.1e-07 57.0 53 54.7
Migut.N00104 Erythranthe guttata HOM05D000319 ORTHO05D000903 8.1e-07 57.0 53 54.7
Gohir.A10G163000 Gossypium hirsutum HOM05D000319 ORTHO05D000903 8.1e-07 57.0 53 54.7
Gohir.D02G053800 Gossypium hirsutum HOM05D000319 ORTHO05D000903 8.1e-07 57.0 62 45.2
Gohir.D10G169400 Gossypium hirsutum HOM05D000319 ORTHO05D000903 8.1e-07 57.0 53 54.7
Gorai.005G059400 Gossypium raimondii HOM05D000319 ORTHO05D000903 8.1e-07 57.0 62 45.2
Gorai.011G188900 Gossypium raimondii HOM05D000319 ORTHO05D000903 8.1e-07 57.0 53 54.7
Lalb_Chr07g0177651 Lupinus albus HOM05D000319 ORTHO05D000903 8.1e-07 57.0 53 54.7
MBI19_g23989_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D000903 8.1e-07 57.0 52 55.8
Sed0015748 Sechium edule HOM05D000319 ORTHO05D000903 8.1e-07 57.0 53 52.8
Sc19g0005080 Simmondsia chinensis HOM05D000319 ORTHO05D000903 8.1e-07 57.0 53 54.7
Solyc01g067210.4 Solanum lycopersicum HOM05D000319 ORTHO05D010858 8.1e-07 57.0 52 57.7
Thecc.04G282500 Theobroma cacao HOM05D000319 ORTHO05D000903 8.1e-07 57.0 53 54.7
Actinidia00040 Actinidia chinensis HOM05D000319 ORTHO05D000903 1.1e-06 56.6 53 54.7
Cfa015371 Carpinus fangiana HOM05D000319 ORTHO05D000903 1.1e-06 56.6 52 55.8
COL.COLO4_04603 Corchorus olitorius HOM05D000319 ORTHO05D000903 1.1e-06 56.6 61 49.2
Haze_01230 Corylus avellana HOM05D000319 ORTHO05D000903 1.1e-06 56.6 52 55.8
Gohir.A01G030451 Gossypium hirsutum HOM05D000319 ORTHO05D000903 1.1e-06 56.6 53 54.7
Gohir.D01G023466 Gossypium hirsutum HOM05D000319 ORTHO05D000903 1.1e-06 56.6 53 54.7
Gorai.002G027800 Gossypium raimondii HOM05D000319 ORTHO05D000903 1.1e-06 56.6 53 54.7
Lj6C673G12 Lonicera japonica HOM05D000319 ORTHO05D000903 1.1e-06 56.6 53 54.7
Peaxi162Scf00386g00004 Petunia axillaris HOM05D000319 ORTHO05D000903 1.1e-06 56.6 52 55.8
QL06p008427 Quercus lobata HOM05D000319 ORTHO05D000903 1.1e-06 56.6 52 55.8
Rhsim02G0011800 Rhododendron simsii HOM05D000319 ORTHO05D000903 1.1e-06 56.6 52 55.8
Solyc01g067100.4 Solanum lycopersicum HOM05D000319 ORTHO05D000903 1.1e-06 56.6 53 54.7
Sopen01g028890 Solanum pennellii HOM05D000319 ORTHO05D000903 1.1e-06 56.6 53 54.7
Aqoxy2G03046 Aquilegia oxysepala HOM05D000319 ORTHO05D000903 1.4e-06 56.2 52 53.8
Aqoxy5G00654 Aquilegia oxysepala HOM05D000319 ORTHO05D000903 1.4e-06 56.2 52 55.8
Ciclev10004406m.g Citrus clementina HOM05D000319 ORTHO05D000903 1.4e-06 56.2 53 52.8
Medtr4g119413 Medicago truncatula HOM05D000319 ORTHO05D000903 1.4e-06 56.2 53 50.9
Nn4g25931 Nelumbo nucifera HOM05D000319 ORTHO05D000903 1.4e-06 56.2 52 55.8
Psat1g152360 Pisum sativum HOM05D000319 ORTHO05D000903 1.4e-06 56.2 52 55.8
TWI73G0907 Tripterygium wilfordii HOM05D000319 ORTHO05D000903 1.4e-06 56.2 53 54.7
TAR362G0414 Trochodendron aralioides HOM05D000319 ORTHO05D000903 1.4e-06 56.2 52 55.8
DCAR_027084 Daucus carota HOM05D000319 ORTHO05D000903 1.8e-06 55.8 52 55.8
Lalb_Chr13g0303721 Lupinus albus HOM05D000319 ORTHO05D000903 1.8e-06 55.8 53 52.8
MD16G1171700 Malus domestica HOM05D000319 ORTHO05D000903 1.8e-06 55.8 53 52.8
Sed0015196 Sechium edule HOM05D000319 ORTHO05D000903 1.8e-06 55.8 51 56.9
SGA_v2.0_scaffold428G51519 Striga asiatica HOM05D000319 ORTHO05D000903 1.8e-06 55.8 53 52.8
SalBow2G1315 Salvia bowleyana HOM05D000319 ORTHO05D000903 2.4e-06 55.5 53 52.8
Sopen01g028980 Solanum pennellii HOM05D000319 ORTHO05D000903 2.4e-06 55.5 49 59.2
PGSC0003DMG400035459 Solanum tuberosum HOM05D000319 ORTHO05D000903 2.4e-06 55.5 53 52.8
CSS0026292 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 3.1e-06 55.1 51 54.9
Gohir.A02G048500 Gossypium hirsutum HOM05D000319 ORTHO05D000903 3.1e-06 55.1 62 43.5
HanXRQChr03g0079961 Helianthus annuus HOM05D000319 ORTHO05D000903 3.1e-06 55.1 52 53.8
Lsat_1_v5_gn_3_24140 Lactuca sativa HOM05D000319 ORTHO05D000903 3.1e-06 55.1 53 52.8
Lj4g0007474 Lotus japonicus HOM05D000319 ORTHO05D000903 3.1e-06 55.1 52 53.8
MD13G1170300 Malus domestica HOM05D000319 ORTHO05D000903 3.1e-06 55.1 53 52.8
GSVIVG01017738001 Vitis vinifera HOM05D000319 ORTHO05D000903 3.1e-06 55.1 52 55.8
Actinidia21064 Actinidia chinensis HOM05D000319 ORTHO05D000903 4.0e-06 54.7 52 55.8
Actinidia24845 Actinidia chinensis HOM05D000319 ORTHO05D012139 4.0e-06 54.7 52 55.8
arahy.Tifrunner.gnm1.ann1.7WQ35J Arachis hypogaea HOM05D000319 ORTHO05D000111 4.0e-06 54.7 53 54.7
CSS0025504 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D000903 4.0e-06 54.7 51 52.9
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 4.0e-06 54.7 52 53.8
Hma1.2p1_0078F.1_g040680 Hydrangea macrophylla HOM05D000319 ORTHO05D000903 4.0e-06 54.7 53 52.8
Oeu033349.2 Olea europaea HOM05D000319 ORTHO05D000903 4.0e-06 54.7 54 53.7
TAR636G0510 Trochodendron aralioides HOM05D000319 ORTHO05D000903 4.0e-06 54.7 51 54.9
MSTRG.3928 Avicennia marina HOM05D000319 ORTHO05D000903 5.2e-06 54.3 49 57.1
CDE01G0396 Ceratophyllum demersum HOM05D000319 ORTHO05D000903 5.2e-06 54.3 53 50.9
Manes.01G073125 Manihot esculenta HOM05D000319 ORTHO05D000903 5.2e-06 54.3 53 50.9
Nn3g21390 Nelumbo nucifera HOM05D000319 ORTHO05D000903 5.2e-06 54.3 52 51.9
Nitab4.5_0009107g0010 Nicotiana tabacum HOM05D000319 ORTHO05D000903 5.2e-06 54.3 56 51.8
Sed0010368 Sechium edule HOM05D000319 ORTHO05D000903 5.2e-06 54.3 52 53.8
HPP92_017215 Vanilla planifolia HOM05D000319 ORTHO05D000903 5.2e-06 54.3 52 55.8
COL.COLO4_13896 Corchorus olitorius HOM05D000319 ORTHO05D000903 6.9e-06 53.9 53 50.9
Dinv19734 Davidia involucrata HOM05D000319 ORTHO05D000903 6.9e-06 53.9 53 50.9
Dinv33020 Davidia involucrata HOM05D000319 ORTHO05D000903 6.9e-06 53.9 53 50.9
Eucgr.B01285 Eucalyptus grandis HOM05D000319 ORTHO05D000903 6.9e-06 53.9 53 50.9
Lj3A815G51 Lonicera japonica HOM05D000319 ORTHO05D000903 6.9e-06 53.9 53 52.8
Nn4g25949 Nelumbo nucifera HOM05D000319 ORTHO05D000903 6.9e-06 53.9 67 46.3
TWI53G0798 Tripterygium wilfordii HOM05D000319 ORTHO05D000903 6.9e-06 53.9 47 59.6
GSVIVG01010966001 Vitis vinifera HOM05D000319 ORTHO05D000903 6.9e-06 53.9 53 50.9
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 9.0e-06 53.5 52 51.9
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 9.0e-06 53.5 52 50.0
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 9.0e-06 53.5 52 50.0
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 9.0e-06 53.5 52 50.0
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 9.0e-06 53.5 52 50.0
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 9.0e-06 53.5 52 50.0
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 9.0e-06 53.5 52 50.0
BolC3t16067H Brassica oleracea HOM05D000319 ORTHO05D000903 9.0e-06 53.5 52 50.0
BolC9t53139H Brassica oleracea HOM05D000319 ORTHO05D000903 9.0e-06 53.5 52 50.0
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 9.0e-06 53.5 52 50.0
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 9.0e-06 53.5 52 50.0
Ca_23239_v3 Cicer arietinum L. HOM05D000319 ORTHO05D000903 9.0e-06 53.5 53 49.1
Gohir.A09G062400 Gossypium hirsutum HOM05D000319 ORTHO05D000903 9.0e-06 53.5 53 52.8
Gohir.D09G061300 Gossypium hirsutum HOM05D000319 ORTHO05D000903 9.0e-06 53.5 53 52.8
Gorai.006G075900 Gossypium raimondii HOM05D000319 ORTHO05D000903 9.0e-06 53.5 53 52.8
Lj6A673T96 Lonicera japonica HOM05D000319 ORTHO05D000903 9.0e-06 53.5 54 50.0
QL06p008414 Quercus lobata HOM05D000319 ORTHO05D000903 9.0e-06 53.5 52 51.9


User provided reference genes

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