Gene: Sopen01g028890

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g028890
  • Transcript Identifier Sopen01g028890.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 85402294-85409652 : positive

Gene Family Information

  • ID HOM05D000319
  • #Genes/#Species 1449/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g028890.1

Descriptions

  • Description Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. | cullin 1 (CUL1) | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , Cullin homology , Cullin protein, neddylation domain , Cullin, conserved site , Cullin, N-terminal , Cullin repeat-like-containing domain | BEST Arabidopsis thaliana protein match is: cullin 2 ., Cullin, N-terminal
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010265
ISO
PLAZA Integrative OrthologySCF complex assembly AT4G02570
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT4G02570
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT4G02570
GO:0009867
ISO
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway AT4G02570
GO:0042752
ISO
PLAZA Integrative Orthologyregulation of circadian rhythm AT4G02570
GO:0009753
ISO
PLAZA Integrative Orthologyresponse to jasmonic acid AT4G02570
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT4G02570
GO:0010087
ISO
PLAZA Integrative Orthologyphloem or xylem histogenesis AT4G02570

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G02570
GO:0031625
IEA
InterProubiquitin protein ligase binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000794
ISO
PLAZA Integrative Orthologycondensed nuclear chromosome AT4G02570
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G02570
GO:0005819
ISO
PLAZA Integrative Orthologyspindle AT4G02570
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT4G02570
GO:0000151
ISO
PLAZA Integrative Orthologyubiquitin ligase complex AT4G02570
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G02570
GO:0009524
ISO
PLAZA Integrative Orthologyphragmoplast AT4G02570
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT1G02980

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016159 Cullin repeat-like-containing domain superfamily
IPR036390 Winged helix DNA-binding domain superfamily
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR036317 Cullin homology domain superfamily
IPR019559 Cullin protein, neddylation domain
IPR045093 Cullin
IPR001373 Cullin, N-terminal
IPR016158 Cullin homology domain
Mapman id Description
19.2.2.8.1.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.scaffold component CUL1/CUL2