Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.5e-147 526.2 270 100.0
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 9.0e-84 314.3 298 63.1
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.2e-80 303.9 267 67.0
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.9e-73 280.0 298 60.1
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.9e-66 256.1 299 55.5
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 5.0e-66 255.4 294 55.4
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.2e-65 252.7 281 56.6
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 4.2e-65 252.3 266 59.0
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 6.1e-64 248.4 297 55.2
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 6.7e-63 245.0 269 58.0
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 2.0e-62 243.4 259 57.1
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 2.8e-61 239.6 264 54.9
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 1.2e-59 234.2 261 54.8
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 1.3e-58 230.7 265 55.5
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.2e-58 229.9 310 48.1
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 6.5e-58 228.4 245 55.9
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.5e-57 227.3 263 55.5
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 2.5e-57 226.5 271 54.2
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 9.4e-57 224.6 270 54.8
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 2.1e-56 223.4 299 50.5
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.4e-55 220.7 239 56.1
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 2.3e-55 219.9 236 55.9
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.0e-55 219.5 236 55.9
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 3.0e-55 219.5 299 49.5
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 8.8e-55 218.0 236 55.5
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.2e-54 217.6 258 54.3
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.8e-54 214.5 263 52.1
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 1.3e-53 214.2 269 51.7
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 3.7e-53 212.6 269 50.9
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.8e-53 212.2 263 51.7
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.1e-52 211.1 262 51.5
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.1e-52 211.1 262 51.5
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.4e-52 210.7 263 51.7
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 4.1e-52 209.1 263 51.7
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 5.4e-52 208.8 300 47.3
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 8.5e-50 201.4 264 51.1
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 8.5e-50 201.4 248 50.8
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.1e-49 201.1 299 47.8
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.5e-49 200.7 301 45.5
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 2.5e-49 199.9 300 46.3
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 4.2e-49 199.1 270 49.6
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 7.2e-49 198.4 299 48.2
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 1.6e-48 197.2 271 49.4
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.7e-48 196.4 283 48.4
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 8.0e-48 194.9 271 49.8
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 4.4e-46 189.1 277 47.7
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 4.4e-46 189.1 195 58.5
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.2e-45 186.8 277 47.3
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 6.3e-45 185.3 198 56.1
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.4e-44 184.1 266 48.5
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.4e-44 182.2 266 49.2
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.4e-44 182.2 266 49.2
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 7.0e-44 181.8 320 41.6
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.2e-43 181.0 270 48.5
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 5.9e-43 178.7 295 44.1
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 3.8e-42 176.0 284 44.0
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 3.8e-42 176.0 334 43.1
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 5.0e-42 175.6 279 43.7
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 6.6e-42 175.3 195 56.4
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 6.6e-42 175.3 296 42.9
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 3.3e-41 172.9 245 46.1
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 3.3e-41 172.9 270 44.1
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 4.7e-40 169.1 280 44.3
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 6.1e-40 168.7 289 43.6
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 6.8e-39 165.2 225 46.7
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 6.8e-39 165.2 282 44.0
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 1.2e-38 164.5 252 46.8
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.6e-38 163.3 292 43.8
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 4.4e-38 162.5 301 42.2
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 3.7e-37 159.5 252 44.8
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.1e-36 157.9 218 49.5
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.4e-36 157.5 228 45.2
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 1.6e-35 154.1 223 46.2
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 5.9e-35 152.1 151 58.9
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.3e-34 150.2 264 42.8
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 5.0e-34 149.1 261 42.1
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 1.9e-33 147.1 269 46.5
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.5e-33 146.7 265 41.9
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 2.5e-33 146.7 289 39.4
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 5.6e-33 145.6 240 42.5
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 7.3e-33 145.2 191 47.6
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 6.2e-32 142.1 251 44.6
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 4.0e-31 139.4 293 39.2
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 5.2e-31 139.0 244 41.0
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.5e-30 137.5 248 41.1
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 4.4e-30 136.0 197 47.2
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 1.7e-29 134.0 208 46.2
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 8.3e-29 131.7 214 45.8
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.1e-28 131.3 131 58.0
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.4e-28 131.0 259 39.0
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.4e-28 130.2 175 45.7
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 1.2e-27 127.9 95 71.6
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 4.6e-27 125.9 119 55.5
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 6.0e-27 125.6 248 39.9
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.7e-26 124.0 174 48.3
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 3.0e-26 123.2 259 40.2
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 3.0e-26 123.2 195 44.1
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 5.0e-26 122.5 224 41.5
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 3.3e-25 119.8 267 36.7
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 3.3e-25 119.8 263 37.3
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 4.3e-25 119.4 233 40.3
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 9.5e-25 118.2 269 39.4
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 2.1e-24 117.1 161 47.8
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 4.7e-24 115.9 275 36.0
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 6.2e-24 115.5 153 48.4
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 8.1e-24 115.2 153 47.7
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.8e-23 114.0 268 37.3
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 8.9e-23 111.7 207 41.5
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 8.9e-23 111.7 244 38.1
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.2e-22 111.3 153 47.1
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 1.2e-22 111.3 153 47.1
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 2.6e-22 110.2 177 42.4
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 6.4e-21 105.5 130 52.3
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 6.4e-21 105.5 180 41.1
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 4.1e-20 102.8 295 33.6
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.2e-19 101.3 89 64.0
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 2.7e-19 100.1 151 45.7
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 5.6e-17 92.4 145 46.2
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 2.8e-16 90.1 113 45.1
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.5e-14 84.3 115 42.6
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-14 84.3 230 35.7
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 2.0e-14 84.0 117 41.0
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 3.4e-14 83.2 94 51.1
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.6e-14 82.0 204 36.3
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 9.9e-14 81.6 93 50.5
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.3e-13 81.3 86 53.5
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 4.9e-13 79.3 86 40.7
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 6.4e-13 79.0 76 52.6
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 4.1e-12 76.3 175 34.3
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-11 73.9 116 41.4
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.5e-11 73.2 162 35.2
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 6.0e-11 72.4 177 34.5
MELO3C023092.2 Cucumis melo HOM05D011664 ORTHO05D015088 1.1e-09 68.2 67 52.2
MELO3C027569.2 Cucumis melo HOM05D011664 ORTHO05D015088 1.5e-09 67.8 63 55.6
Hma1.2p1_3245F.1_g334340 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.3e-09 66.2 72 56.9
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 5.6e-09 65.9 51 64.7
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 6.2e-08 62.4 88 40.9
Rhsim01G0181800 Rhododendron simsii HOM05D036485 ORTHO05D013105 1.1e-07 61.6 80 48.8
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.8e-07 60.8 83 43.4
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 4.0e-07 59.7 80 46.2
MELO3C027354.2 Cucumis melo HOM05D011664 ORTHO05D015088 8.9e-07 58.5 57 54.4
MELO3C028239.2 Cucumis melo HOM05D011664 ORTHO05D015088 5.8e-06 55.8 69 47.8
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 5.8e-06 55.8 60 45.0


User provided reference genes

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