Gene: AT4G03090

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G03090
  • Transcript Identifier AT4G03090.5
  • Gene Type Coding gene
  • Location Chr4 : 1366495-1371520 : negative

Gene Family Information

  • ID HOM05D003625
  • #Genes/#Species 189/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G03090.5
  • Alias AtNDX,NDX,Nodulin Homeobox
  • uniprot F4JI44

Descriptions

  • Description sequence-specific DNA binding transcription factor ATNDX
  • Computational description sequence-specific DNA binding;sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); Has 162 Blast hits to 148 proteins in 59 species: Archae - 0; Bacteria - 10; Metazoa - 30; Fungi - 10; Plants - 59; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009845
IMP
Gene Ontologyseed germination1
GO:0009908
IEA
Gene Ontologyflower development
GO:0009908
IEA
InterProflower development
GO:0048364
IMP
Gene Ontologyroot development1
GO:0060195
IDA
Gene Ontologynegative regulation of antisense RNA transcription2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003697
IDA
IEA
Gene Ontologysingle-stranded DNA binding2
GO:0003697
IEA
InterProsingle-stranded DNA binding
GO:0043565
IDA
Gene Ontologysequence-specific DNA binding1
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003700
IDA
Gene OntologyDNA-binding transcription factor activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus2
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA
Gene Ontologynucleolus2
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039325 Nodulin homeobox protein
IPR001356 Homeobox domain
Mapman id Description
15.5.3.11 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (NDX)