Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1689.1 888 100.0
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1456.8 892 85.0
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1385.2 886 78.8
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1368.2 901 78.6
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1344.3 824 82.4
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1338.9 824 80.6
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1337.0 833 82.4
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1333.2 829 82.3
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1332.0 828 81.6
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1330.9 895 77.4
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1330.5 895 77.4
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1327.0 892 76.3
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1318.9 895 77.0
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1317.8 824 81.1
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1304.3 812 80.7
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1303.9 902 74.7
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1299.6 901 74.4
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1296.6 872 77.3
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1295.8 895 76.4
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1295.0 888 75.0
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1288.9 855 77.5
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1283.5 893 77.2
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1282.7 823 79.3
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1282.3 880 74.5
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1281.9 857 76.2
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1281.5 840 77.0
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1279.6 886 75.5
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1277.3 841 77.4
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1276.5 812 79.1
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1276.2 848 76.7
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1276.2 883 76.6
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1273.5 865 75.8
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1272.7 887 74.0
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1270.0 882 74.8
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1269.2 852 77.1
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1267.7 887 74.0
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1264.6 893 75.0
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1264.6 887 73.8
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1263.4 896 74.8
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1261.5 882 73.5
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1259.2 903 74.2
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1259.2 827 77.1
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1257.3 843 76.2
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1256.9 904 73.8
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1256.5 830 77.8
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1255.7 832 76.2
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1251.1 833 75.6
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1249.6 886 72.9
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1247.3 835 75.4
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1246.1 834 75.3
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1245.0 833 76.6
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1243.0 888 72.9
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1242.6 830 75.9
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1241.5 829 78.8
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1240.7 830 75.7
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1239.9 837 74.8
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1239.9 895 74.3
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1239.6 845 74.4
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1237.2 868 73.6
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1235.7 885 73.0
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1233.8 828 75.8
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1231.1 829 76.1
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1224.5 885 72.1
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1221.5 870 72.8
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1221.1 885 72.2
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1218.4 821 76.7
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1208.4 817 74.2
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1204.9 839 74.1
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1198.7 836 73.0
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1198.3 878 71.6
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1187.6 898 70.3
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1184.9 870 71.4
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1175.6 892 68.7
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1168.3 815 71.3
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1163.7 890 67.1
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1161.0 827 73.0
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1156.7 864 70.1
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1155.2 895 70.1
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1140.6 844 68.1
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1139.0 884 68.7
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1135.6 837 70.6
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1116.7 824 69.1
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1093.6 751 73.6
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1093.6 751 73.6
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 5.7e-284 981.1 825 64.6
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 3.7e-267 925.2 623 77.5
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.6e-262 909.8 552 82.6
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 1.8e-258 896.3 839 57.1
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 2.0e-241 839.7 564 76.6
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 1.7e-240 836.6 618 70.9
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 2.0e-236 823.2 815 54.0
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.3e-235 820.5 477 83.0
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 6.6e-232 808.1 519 79.0
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 6.6e-224 781.6 812 52.5
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.2e-212 744.2 502 78.5
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 6.0e-201 705.3 482 75.9
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 8.6e-200 701.4 569 68.5
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.3e-190 671.0 466 76.8
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 1.1e-189 667.9 822 46.1
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 7.6e-188 661.8 825 43.6
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.5e-175 620.9 411 77.6
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 6.5e-147 525.8 358 79.3
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 1.2e-145 521.5 832 37.9
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.6e-105 387.1 304 72.4
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 6.2e-105 386.3 304 72.0
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 5.6e-98 363.2 215 80.9
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.8e-96 358.2 194 91.8
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.3e-96 357.8 201 84.1
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.5e-95 352.8 224 79.9
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 4.9e-94 350.1 209 81.8
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 8.1e-89 332.8 256 68.0
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 3.4e-87 327.4 258 69.0
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 4.4e-87 327.0 197 79.7
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.9e-85 321.6 233 69.1
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.0e-59 234.6 144 78.5
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.1e-56 224.6 178 65.7
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 6.0e-52 210.3 163 66.9
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.0e-46 193.0 111 82.9
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.3e-46 192.6 123 76.4
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.7e-46 192.2 113 80.5
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 8.5e-38 163.3 109 75.2
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 8.5e-38 163.3 209 48.3
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 9.4e-37 159.8 126 79.4
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 4.7e-36 157.5 101 78.2
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.3e-33 149.4 87 80.5
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 6.5e-22 110.5 167 40.1
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.1e-20 105.5 82 70.7
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 6.1e-20 104.0 87 58.6
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 2.0e-18 99.0 68 70.6
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.7e-17 95.9 59 84.7
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.8e-16 92.4 64 71.9
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.2e-15 89.7 65 70.8
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.5e-15 87.8 53 83.0
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 5.9e-15 87.4 72 61.1
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.9e-15 87.4 72 61.1
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 2.9e-14 85.1 50 82.0
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.7e-12 78.6 71 67.6
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 2.2e-09 68.9 232 24.6
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 4.8e-09 67.8 223 26.5
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 1.4e-08 66.2 42 76.2
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 1.4e-08 66.2 218 24.8
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 2.4e-08 65.5 49 69.4
Zm00001eb328630 Zea mays HOM05D000001 ORTHO05D000003 2.9e-06 58.5 223 25.6
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 6.6e-06 57.4 38 68.4


User provided reference genes

Program Settings