Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 2659.4 1333 100.0
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 2489.1 1267 98.7
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 2203.7 1333 82.7
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 2126.7 1397 77.1
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 2103.6 1474 73.4
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1946.8 1334 72.4
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1919.4 1335 72.1
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1893.2 1338 71.1
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1883.2 1340 70.0
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1877.4 1257 73.4
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1861.7 1334 69.3
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1854.0 1335 69.4
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1851.6 1335 68.5
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1849.3 1334 71.1
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1842.8 1340 69.6
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1838.9 1339 69.0
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1833.5 1332 69.1
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1828.1 1334 68.4
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1822.4 1337 68.7
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1818.5 1334 67.7
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1816.2 1347 68.4
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1815.0 1339 68.0
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1806.2 1335 68.3
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1805.0 1339 68.0
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1793.1 1333 67.2
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1790.4 1340 67.4
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1778.5 1332 66.7
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1768.1 1333 67.0
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1764.2 1334 66.4
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1760.7 1330 66.8
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1760.3 1334 66.3
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1755.3 1334 66.0
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1754.2 1336 65.9
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1751.5 1334 66.3
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1751.1 1334 66.0
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1740.3 1331 66.6
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1739.5 1334 65.3
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1739.2 1335 66.7
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1739.2 1332 65.9
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1734.2 1349 64.9
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1733.0 1339 65.6
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1726.8 1333 65.5
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1726.8 1375 64.1
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1724.5 1333 65.8
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1713.7 1338 64.3
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1710.3 1309 65.2
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1706.8 1337 64.7
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1706.4 1339 64.7
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1703.7 1334 64.9
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1700.3 1335 64.4
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1695.6 1341 64.0
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1693.3 1334 64.9
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1691.8 1336 63.1
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1691.0 1338 63.5
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1680.6 1334 63.1
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1674.8 1335 63.4
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1672.9 1336 63.3
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1672.5 1334 62.6
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1672.1 1219 68.2
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1668.3 1335 63.3
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1667.9 1219 68.3
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1660.2 1337 62.7
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1658.3 1343 62.8
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1643.6 1339 63.0
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1643.2 1339 62.4
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1640.9 1336 62.1
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1638.2 1338 63.0
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1627.5 1336 62.3
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1622.1 1336 62.5
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1612.0 1341 62.5
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1593.9 1342 61.3
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1577.4 1324 61.9
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1568.5 1335 60.1
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1567.4 1323 61.9
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1563.1 1257 63.0
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1521.5 1324 59.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1518.8 1335 58.7
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1509.6 1335 58.5
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1500.7 1325 57.8
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1491.5 1334 57.8
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1476.5 1327 58.5
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1473.4 1327 58.0
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1472.2 1327 58.3
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1464.5 1329 57.7
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1464.5 1329 57.7
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1460.7 1326 57.8
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1457.2 1322 56.9
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1430.2 1325 57.1
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1404.8 1321 56.5
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1349.7 1321 53.1
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1345.1 1333 52.4
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1340.5 908 72.6
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1338.6 987 69.7
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1307.4 1092 61.7
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1282.3 1337 51.1
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1214.1 988 63.3
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1213.4 859 70.7
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1136.7 1247 49.5
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 1.4e-302 1043.5 1311 46.5
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 8.5e-292 1007.7 1338 43.0
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 9.8e-264 914.4 1322 41.2
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 8.0e-258 894.8 1287 40.8
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 6.4e-247 858.6 1327 39.2
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 6.2e-242 842.0 1135 43.1
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 3.0e-236 823.2 965 47.6
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 3.2e-182 643.7 589 55.5
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 2.1e-181 641.0 590 57.8
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 5.7e-179 632.9 482 66.0
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 2.0e-123 448.4 1148 29.6
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 5.8e-115 420.2 329 61.7
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 3.0e-111 407.9 290 70.3
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 3.5e-104 384.4 322 61.2
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.5e-102 378.3 371 54.4
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 6.2e-93 347.1 1075 27.9
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 4.5e-83 314.3 264 64.0
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 3.2e-81 308.1 235 63.8
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 6.0e-80 303.9 203 72.9
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.2e-73 281.2 183 73.2
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 1.6e-69 269.2 310 48.1
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 8.2e-61 240.4 150 77.3
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 9.1e-60 236.9 301 46.2
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 1.8e-39 169.5 119 68.9
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 3.1e-36 158.7 128 67.2
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 8.5e-34 150.6 76 94.7
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 6.6e-26 124.4 122 55.7
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 1.9e-25 122.9 661 24.5
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.3e-21 110.2 99 50.5
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 7.3e-17 94.4 67 74.6
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 2.8e-16 92.4 108 48.1
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 3.6e-08 65.5 153 28.1
Ah.01g013690 Amaranthus hybridus HOM05D005691 ORTHO05D007096 8.0e-08 64.3 73 54.8
Ah.14g082590 Amaranthus hybridus HOM05D005691 ORTHO05D007096 8.0e-08 64.3 73 54.8
BolC7t41436H Brassica oleracea HOM05D005691 ORTHO05D007096 1.4e-07 63.5 144 32.6
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 5.8e-06 58.2 39 69.2


User provided reference genes

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