Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038732 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 6.0e-305 1050.0 534 100.0
CSS0035276 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 3.3e-178 629.0 501 70.7
Actinidia19476 Actinidia chinensis HOM05D002606 ORTHO05D003016 2.4e-104 383.6 503 48.9
Actinidia16757 Actinidia chinensis HOM05D002606 ORTHO05D003016 3.0e-91 340.1 474 47.7
vmacro03988 Vaccinium macrocarpon HOM05D002606 ORTHO05D003016 5.0e-78 296.2 503 41.6
Hma1.2p1_0015F.1_g010580 Hydrangea macrophylla HOM05D002606 ORTHO05D003016 1.9e-69 267.7 502 40.6
QL05p052775 Quercus lobata HOM05D002606 ORTHO05D003016 4.4e-50 203.4 503 34.4
Manes.17G062800 Manihot esculenta HOM05D002606 ORTHO05D003016 1.9e-48 198.0 512 35.7
Potri.011G077001 Populus trichocarpa HOM05D002606 ORTHO05D003016 6.6e-46 189.5 506 32.8
Prupe.4G072200 Prunus persica HOM05D002606 ORTHO05D003016 1.3e-44 185.3 499 31.9
Cfa001058 Carpinus fangiana HOM05D002606 ORTHO05D003016 6.2e-44 183.0 504 32.3
Lj1A1180T81 Lonicera japonica HOM05D002606 ORTHO05D003016 1.8e-43 181.4 515 33.0
Atru.chr10.1471 Acer truncatum HOM05D002606 ORTHO05D003016 1.2e-42 178.7 543 31.3
MD10G1269500 Malus domestica HOM05D002606 ORTHO05D003016 9.3e-40 169.1 499 31.5
FAN25G0150 Fragaria x ananassa HOM05D002606 ORTHO05D003016 3.3e-37 160.6 515 29.9
FAN16G3491 Fragaria x ananassa HOM05D002606 ORTHO05D003016 5.6e-37 159.8 508 30.3
TWI09G1585 Tripterygium wilfordii HOM05D002606 ORTHO05D003016 1.4e-35 155.2 502 30.1
Cc09_g09990 Coffea canephora HOM05D002606 ORTHO05D003016 1.8e-35 154.8 501 29.9
Oeu001059.1 Olea europaea HOM05D002606 ORTHO05D003016 9.0e-35 152.5 522 31.4
Eucgr.D00356 Eucalyptus grandis HOM05D002606 ORTHO05D003016 4.5e-34 150.2 512 31.4
FAN11G1742 Fragaria x ananassa HOM05D002606 ORTHO05D003016 3.8e-33 147.1 508 29.3
FvH4_3g06460 Fragaria vesca HOM05D002606 ORTHO05D003016 4.9e-33 146.7 508 29.5
RcHm_v2.0_Chr5g0012831 Rosa chinensis HOM05D002606 ORTHO05D003016 6.5e-33 146.4 517 28.8
FAN21G3713 Fragaria x ananassa HOM05D002606 ORTHO05D003016 3.2e-32 144.1 507 29.4
DCAR_003956 Daucus carota HOM05D002606 ORTHO05D003016 5.5e-32 143.3 517 30.6
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 7.9e-31 139.4 479 29.4
Peaxi162Scf00308g00815 Petunia axillaris HOM05D002606 ORTHO05D003016 2.3e-30 137.9 513 29.4
Nn3g20963 Nelumbo nucifera HOM05D002606 ORTHO05D003016 3.0e-30 137.5 507 29.4
Nitab4.5_0007383g0040 Nicotiana tabacum HOM05D002606 ORTHO05D003016 1.1e-29 135.6 501 29.3
Haze_05457 Corylus avellana HOM05D002606 ORTHO05D003016 4.3e-29 133.7 101 68.3
Duzib235G0230 Durio zibethinus HOM05D002606 ORTHO05D003016 5.7e-29 133.3 502 28.1
Nitab4.5_0003746g0040 Nicotiana tabacum HOM05D002606 ORTHO05D003016 1.3e-28 132.1 506 29.4
ECA236G2241 Erigeron canadensis HOM05D002606 ORTHO05D003016 2.1e-28 131.3 495 26.1
Cpa.g.sc17.162 Carica papaya HOM05D002606 ORTHO05D003016 1.1e-27 129.0 466 27.5
COL.COLO4_22817 Corchorus olitorius HOM05D002606 ORTHO05D003016 2.9e-25 120.9 522 28.2
CANSAT35G1314 Cannabis sativa HOM05D002606 ORTHO05D003016 5.0e-25 120.2 503 28.0
Phvul.002G243800 Phaseolus vulgaris HOM05D002606 ORTHO05D003016 6.5e-25 119.8 531 28.2
VMungo0251G0960 Vigna mungo HOM05D002606 ORTHO05D003016 3.2e-24 117.5 511 28.6
ClCG03G007250 Citrullus lanatus HOM05D002606 ORTHO05D003016 2.7e-23 114.4 498 27.9
Gohir.D10G033300 Gossypium hirsutum HOM05D002606 ORTHO05D003016 2.7e-23 114.4 92 63.0
Gohir.A10G032600 Gossypium hirsutum HOM05D002606 ORTHO05D003016 6.1e-23 113.2 92 63.0
Ciclev10014561m.g Citrus clementina HOM05D002606 ORTHO05D003016 1.3e-22 112.1 470 27.7
Gorai.011G035100 Gossypium raimondii HOM05D002606 ORTHO05D003016 1.3e-22 112.1 92 62.0
Thecc.06G159700 Theobroma cacao HOM05D002606 ORTHO05D003016 3.9e-22 110.5 493 25.8
HanXRQChr04g0115551 Helianthus annuus HOM05D002606 ORTHO05D003016 1.1e-21 109.0 494 26.9
Sopen02g020560 Solanum pennellii HOM05D002606 ORTHO05D003016 1.5e-21 108.6 96 60.4
GSVIVG01021316001 Vitis vinifera HOM05D002606 ORTHO05D003016 1.5e-21 108.6 109 58.7
Lj4g0026804 Lotus japonicus HOM05D002606 ORTHO05D003016 2.5e-21 107.8 529 26.3
PGSC0003DMG400007247 Solanum tuberosum HOM05D002606 ORTHO05D003016 2.5e-21 107.8 89 61.8
MSTRG.16192 Avicennia marina HOM05D002606 ORTHO05D003016 4.3e-21 107.1 495 28.7
Psat7g066200 Pisum sativum HOM05D002606 ORTHO05D003016 5.7e-21 106.7 494 26.7
Haze_05454 Corylus avellana HOM05D002606 ORTHO05D003016 9.7e-21 105.9 121 55.4
Solyc02g071530.2 Solanum lycopersicum HOM05D002606 ORTHO05D003016 9.7e-21 105.9 89 61.8
CAN.G257.100 Capsicum annuum HOM05D002606 ORTHO05D003016 3.7e-20 104.0 89 60.7
CsaV3_1G032850 Cucumis sativus L. HOM05D002606 ORTHO05D003016 3.7e-20 104.0 501 26.1
Ca_17874_v3 Cicer arietinum L. HOM05D002606 ORTHO05D003016 6.3e-20 103.2 498 26.1
MELO3C002697.2 Cucumis melo HOM05D002606 ORTHO05D003016 6.3e-20 103.2 499 26.7
Haze_05456 Corylus avellana HOM05D002606 ORTHO05D003016 1.4e-19 102.1 202 38.6
Medtr8g087940 Medicago truncatula HOM05D002606 ORTHO05D003016 1.4e-19 102.1 497 26.4
Glyma.08G120900 Glycine max HOM05D002606 ORTHO05D003016 3.1e-19 100.9 520 25.2
AUR62035823 Chenopodium quinoa HOM05D002606 ORTHO05D003016 5.3e-19 100.1 496 25.6
PSO675G2539 Papaver somniferum HOM05D002606 ORTHO05D003016 5.3e-19 100.1 94 56.4
Aqoxy4G00175 Aquilegia oxysepala HOM05D002606 ORTHO05D003016 2.0e-18 98.2 532 25.8
PSO541G3031 Papaver somniferum HOM05D002606 ORTHO05D003016 2.0e-18 98.2 94 55.3
Lsat_1_v5_gn_7_26381 Lactuca sativa HOM05D002606 ORTHO05D003016 2.6e-18 97.8 70 67.1
CiPaw.09G132100 Carya illinoinensis HOM05D002606 ORTHO05D003016 4.5e-18 97.1 477 27.3
MD00G1093000 Malus domestica HOM05D002606 ORTHO05D003016 7.7e-18 96.3 98 58.2
Sed0008006 Sechium edule HOM05D002606 ORTHO05D003016 7.7e-18 96.3 496 25.4
SGA_v2.0_scaffold1G00119 Striga asiatica HOM05D002606 ORTHO05D003016 1.7e-17 95.1 89 60.7
AUR62027619 Chenopodium quinoa HOM05D002606 ORTHO05D003016 3.8e-17 94.0 536 24.3
Sc24g0001920 Simmondsia chinensis HOM05D002606 ORTHO05D003016 1.1e-16 92.4 499 27.1
EL10Ac8g19815 Beta vulgaris HOM05D002606 ORTHO05D003016 4.2e-16 90.5 506 24.7
ATR0763G174 Amborella trichopoda HOM05D002606 ORTHO05D003016 5.5e-16 90.1 75 62.7
SalBow8G0847 Salvia bowleyana HOM05D002606 ORTHO05D003016 7.2e-16 89.7 64 68.8
SalBow8G3031 Salvia bowleyana HOM05D002606 ORTHO05D003016 7.2e-16 89.7 64 68.8
AT1G29630 Arabidopsis thaliana HOM05D002606 ORTHO05D003016 1.6e-15 88.6 94 52.1
AL1G43460 Arabidopsis lyrata HOM05D002606 ORTHO05D003016 2.1e-15 88.2 74 59.5
arahy.Tifrunner.gnm1.ann1.0CW7N2 Arachis hypogaea HOM05D002606 ORTHO05D003016 2.7e-15 87.8 477 25.4
arahy.Tifrunner.gnm1.ann1.CS3QBI Arachis hypogaea HOM05D002606 ORTHO05D003016 2.7e-15 87.8 477 25.4
CARHR028950 Cardamine hirsuta HOM05D002606 ORTHO05D003016 4.6e-15 87.0 74 62.2
A07p10450 Brassica napus HOM05D002606 ORTHO05D003016 6.1e-15 86.7 88 53.4
C07p16090 Brassica napus HOM05D002606 ORTHO05D003016 6.1e-15 86.7 88 53.4
BolC7t42094H Brassica oleracea HOM05D002606 ORTHO05D003016 6.1e-15 86.7 88 53.4
BraA07t28845Z Brassica rapa HOM05D002606 ORTHO05D003016 6.1e-15 86.7 88 53.4
Eucgr.D00367 Eucalyptus grandis HOM05D002606 ORTHO05D003016 7.9e-15 86.3 419 27.7
Thhalv10006968m.g Eutrema salsugineum HOM05D002606 ORTHO05D003016 7.9e-15 86.3 77 58.4
Carub.0001s2785 Capsella rubella HOM05D002606 ORTHO05D003016 1.0e-14 85.9 74 60.8
Lalb_Chr12g0204841 Lupinus albus HOM05D002606 ORTHO05D003016 1.8e-14 85.1 502 24.7
Sp1g25530 Schrenkiella parvula HOM05D002606 ORTHO05D003016 3.0e-14 84.3 77 58.4
BcaB03g13871 Brassica carinata HOM05D002606 ORTHO05D003016 3.9e-14 84.0 96 50.0
TPR.G6726 Trifolium pratense HOM05D002606 ORTHO05D003016 6.7e-14 83.2 498 24.3
Hund17843 Selenicereus undatus HOM05D002606 ORTHO05D003016 8.8e-14 82.8 75 52.0
Aa31LG6G6030 Aethionema arabicum HOM05D002606 ORTHO05D003016 1.1e-13 82.4 74 58.1
BcaC06g35445 Brassica carinata HOM05D002606 ORTHO05D003016 1.5e-13 82.0 67 62.7
THA.LOC104812654 Tarenaya hassleriana HOM05D002606 ORTHO05D003016 2.5e-13 81.3 89 57.3
Migut.M00971 Erythranthe guttata HOM05D002606 ORTHO05D003016 3.3e-13 80.9 62 66.1
Psat4g169240 Pisum sativum HOM05D004443 ORTHO05D003016 1.7e-12 78.6 175 34.3
HanXRQChr01g0030101 Helianthus annuus HOM05D002606 ORTHO05D003016 2.2e-12 78.2 78 55.1
HPP92_017792 Vanilla planifolia HOM05D002606 ORTHO05D003016 2.2e-12 78.2 87 54.0
unitig_32.g11096 Utricularia gibba HOM05D002606 ORTHO05D003016 2.8e-12 77.8 97 45.4
Zm00001eb151620 Zea mays HOM05D002606 ORTHO05D003016 3.1e-11 74.3 69 60.9
Os01g0777300 Oryza sativa ssp. japonica HOM05D002606 ORTHO05D003016 5.3e-11 73.6 58 65.5
SHI19402 Sapria himalayana HOM05D002606 ORTHO05D003016 5.3e-11 73.6 101 44.6
Zm00001eb032720 Zea mays HOM05D006146 ORTHO05D007924 3.4e-10 70.9 73 53.4
HanXRQChr13g0408621 Helianthus annuus HOM05D002606 ORTHO05D003016 4.5e-10 70.5 54 66.7
Ah.14g086800 Amaranthus hybridus HOM05D002606 ORTHO05D003016 1.3e-09 68.9 480 25.4
Mapoly0124s0012 Marchantia polymorpha HOM05D002606 ORTHO05D003016 1.8e-06 58.5 81 43.2


User provided reference genes

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