Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038195 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 3.9e-165 584.7 295 100.0
CSS0030641 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 1.8e-141 506.1 297 89.6
CSS0008403 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 3.9e-141 505.0 297 89.2
CSS0014062 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 3.2e-42 176.4 115 86.1
CSS0011583 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 7.2e-42 175.3 115 85.2
Prupe.6G159800 Prunus persica HOM05D000113 ORTHO05D002571 7.0e-13 79.0 44 90.9
COL.COLO4_22215 Corchorus olitorius HOM05D000113 ORTHO05D002571 9.1e-13 78.6 44 90.9
CSS0000469 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 2.0e-12 77.4 43 93.0
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 2.0e-12 77.4 43 93.0
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 2.0e-12 77.4 43 93.0
MD06G1200100 Malus domestica HOM05D000113 ORTHO05D002571 2.0e-12 77.4 44 88.6
MD07G1285300 Malus domestica HOM05D000113 ORTHO05D002571 2.0e-12 77.4 44 88.6
MD08G1042900 Malus domestica HOM05D000113 ORTHO05D002571 2.0e-12 77.4 44 88.6
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 2.0e-12 77.4 43 93.0
Thecc.03G097900 Theobroma cacao HOM05D000113 ORTHO05D002571 2.0e-12 77.4 44 90.9
GSVIVG01010800001 Vitis vinifera HOM05D000432 ORTHO05D000320 2.0e-12 77.4 62 69.4
QL10p018828 Quercus lobata HOM05D000113 ORTHO05D002571 2.7e-12 77.0 50 86.0
Actinidia19008 Actinidia chinensis HOM05D000113 ORTHO05D002571 3.5e-12 76.6 43 90.7
Duzib205G1857 Durio zibethinus HOM05D000113 ORTHO05D002571 3.5e-12 76.6 43 93.0
Potri.015G008700 Populus trichocarpa HOM05D000113 ORTHO05D002571 3.5e-12 76.6 43 90.7
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 3.5e-12 76.6 44 88.6
Sabra15G0050000 Salix brachista HOM05D000113 ORTHO05D002571 3.5e-12 76.6 43 90.7
Sabra15G0050100 Salix brachista HOM05D000113 ORTHO05D002571 3.5e-12 76.6 43 90.7
Sabra15G0050300 Salix brachista HOM05D000113 ORTHO05D002571 3.5e-12 76.6 43 90.7
Sabra15G0050400 Salix brachista HOM05D000113 ORTHO05D002571 3.5e-12 76.6 43 90.7
Sabra15G0070200 Salix brachista HOM05D000113 ORTHO05D002571 3.5e-12 76.6 43 90.7
Sabra15G0072600 Salix brachista HOM05D000113 ORTHO05D002571 3.5e-12 76.6 43 90.7
Cc04_g15020 Coffea canephora HOM05D000113 ORTHO05D002571 4.5e-12 76.3 43 90.7
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 4.5e-12 76.3 56 76.8
Cfa019308 Carpinus fangiana HOM05D000113 ORTHO05D002571 5.9e-12 75.9 43 90.7
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 5.9e-12 75.9 43 90.7
QL10p018794 Quercus lobata HOM05D000113 ORTHO05D002571 5.9e-12 75.9 43 86.0
QL93p0191_0033 Quercus lobata HOM05D000113 ORTHO05D002571 5.9e-12 75.9 43 86.0
SalBow7G4123 Salvia bowleyana HOM05D000113 ORTHO05D002571 7.7e-12 75.5 43 90.7
Actinidia35027 Actinidia chinensis HOM05D000113 ORTHO05D002571 1.0e-11 75.1 43 88.4
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 1.3e-11 74.7 43 88.4
arahy.Tifrunner.gnm1.ann1.U2PNLV Arachis hypogaea HOM05D000113 ORTHO05D002571 1.3e-11 74.7 43 88.4
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 1.3e-11 74.7 43 88.4
Haze_02454 Corylus avellana HOM05D000113 ORTHO05D002571 1.7e-11 74.3 43 88.4
SGA_v2.0_scaffold7G04034 Striga asiatica HOM05D000113 ORTHO05D002571 1.7e-11 74.3 44 88.6
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 1.7e-11 74.3 43 90.7
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 2.2e-11 73.9 43 86.0
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 2.2e-11 73.9 43 86.0
Haze_07691 Corylus avellana HOM05D000113 ORTHO05D002571 2.2e-11 73.9 43 90.7
Cfa004955 Carpinus fangiana HOM05D000113 ORTHO05D002571 2.9e-11 73.6 43 88.4
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 3.8e-11 73.2 43 86.0
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 3.8e-11 73.2 43 86.0
MELO3C017216.2 Cucumis melo HOM05D000113 ORTHO05D002571 5.0e-11 72.8 43 83.7
CsaV3_1G002800 Cucumis sativus L. HOM05D000113 ORTHO05D002571 5.0e-11 72.8 43 83.7
vmacro16510 Vaccinium macrocarpon HOM05D000113 ORTHO05D002571 5.0e-11 72.8 48 83.3
CiPaw.11G050600 Carya illinoinensis HOM05D000113 ORTHO05D002571 6.5e-11 72.4 43 88.4
Lj5C105T19 Lonicera japonica HOM05D000113 ORTHO05D002571 8.5e-11 72.0 43 86.0
AUR62002552 Chenopodium quinoa HOM05D000113 ORTHO05D002571 1.1e-10 71.6 43 86.0
AUR62029967 Chenopodium quinoa HOM05D000113 ORTHO05D002571 1.1e-10 71.6 43 86.0
Hma1.2p1_0060F.1_g033270 Hydrangea macrophylla HOM05D000113 ORTHO05D002571 1.1e-10 71.6 43 86.0
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 1.1e-10 71.6 49 77.6
Sabra15G0006800 Salix brachista HOM05D000113 ORTHO05D002571 1.1e-10 71.6 43 83.7
EL10Ac3g06248 Beta vulgaris HOM05D000113 ORTHO05D002571 1.5e-10 71.2 43 86.0
Sc10g0009750 Simmondsia chinensis HOM05D000113 ORTHO05D002571 1.5e-10 71.2 43 86.0
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 1.5e-10 71.2 51 78.4
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 1.9e-10 70.9 43 83.7
Ca_26393_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 2.5e-10 70.5 43 83.7
Migut.D01678 Erythranthe guttata HOM05D000113 ORTHO05D002571 2.5e-10 70.5 55 74.5
Eucgr.K02505 Eucalyptus grandis HOM05D000113 ORTHO05D002571 3.2e-10 70.1 60 63.3
Rhsim12G0152100 Rhododendron simsii HOM05D000113 ORTHO05D002571 3.2e-10 70.1 49 75.5
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 3.2e-10 70.1 43 83.7
Solyc03g115390.4 Solanum lycopersicum HOM05D000113 ORTHO05D002571 4.2e-10 69.7 50 78.0
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 4.2e-10 69.7 50 78.0
Lalb_Chr13g0294241 Lupinus albus HOM05D000113 ORTHO05D002571 5.5e-10 69.3 43 83.7
Sed0009402 Sechium edule HOM05D000113 ORTHO05D002571 5.5e-10 69.3 43 81.4
ATR0064G016 Amborella trichopoda HOM05D000113 ORTHO05D002571 7.2e-10 68.9 43 83.7
Ca_23233_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 7.2e-10 68.9 43 81.4
Dinv22270 Davidia involucrata HOM05D000113 ORTHO05D002571 7.2e-10 68.9 39 87.2
DCAR_021511 Daucus carota HOM05D000113 ORTHO05D002571 9.4e-10 68.6 43 81.4
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 9.4e-10 68.6 39 89.7
Sed0024832 Sechium edule HOM05D000113 ORTHO05D002571 9.4e-10 68.6 43 76.7
TWI73G0006 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 9.4e-10 68.6 43 81.4
TWI81G1049 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 1.2e-09 68.2 43 79.1
ECA232G2775 Erigeron canadensis HOM05D000113 ORTHO05D002571 2.1e-09 67.4 56 69.6
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 2.1e-09 67.4 47 76.6
THA.LOC104812747 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 2.1e-09 67.4 42 83.3
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 2.1e-09 67.4 43 79.1
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 2.7e-09 67.0 41 85.4
VMungo1127G1561 Vigna mungo HOM05D000113 ORTHO05D002571 2.7e-09 67.0 42 83.3
Ca_13800_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 3.6e-09 66.6 43 79.1
Medtr1g010030 Medicago truncatula HOM05D000113 ORTHO05D002571 3.6e-09 66.6 43 79.1
Rhsim06G0025800 Rhododendron simsii HOM05D000113 ORTHO05D002571 3.6e-09 66.6 49 71.4
Hund09854 Selenicereus undatus HOM05D000113 ORTHO05D012125 4.7e-09 66.2 43 79.1
Atru.chr12.1785 Acer truncatum HOM05D000113 ORTHO05D002571 6.1e-09 65.9 43 74.4
Lsat_1_v5_gn_9_24861 Lactuca sativa HOM05D000113 ORTHO05D002571 8.0e-09 65.5 43 74.4
Psat0s3790g0040 Pisum sativum HOM05D000113 ORTHO05D002571 8.0e-09 65.5 43 76.7
SHI27001 Sapria himalayana HOM05D000113 ORTHO05D002571 1.0e-08 65.1 40 82.5
Thhalv10006650m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 1.8e-08 64.3 42 81.0
FvH4_5g14240 Fragaria vesca HOM05D000113 ORTHO05D002571 1.8e-08 64.3 43 76.7
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.8e-08 64.3 43 76.7
FAN18G0690 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.8e-08 64.3 43 76.7
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 1.8e-08 64.3 42 81.0
HanXRQChr09g0270171 Helianthus annuus HOM05D000113 ORTHO05D002571 2.3e-08 63.9 42 78.6
RcHm_v2.0_Chr7g0182681 Rosa chinensis HOM05D000113 ORTHO05D002571 2.3e-08 63.9 43 76.7
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 3.0e-08 63.5 42 81.0
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 3.0e-08 63.5 42 81.0
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 3.0e-08 63.5 42 81.0
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 3.0e-08 63.5 42 81.0
Actinidia38431 Actinidia chinensis HOM05D000742 ORTHO05D000924 4.0e-08 63.2 47 66.0
Psat1g109600 Pisum sativum HOM05D000113 ORTHO05D002571 4.0e-08 63.2 43 74.4
TAR374G0746 Trochodendron aralioides HOM05D000113 ORTHO05D002571 4.0e-08 63.2 38 84.2
BcaB06g29390 Brassica carinata HOM05D000113 ORTHO05D002571 5.2e-08 62.8 42 78.6
BcaC02g07104 Brassica carinata HOM05D000113 ORTHO05D002571 5.2e-08 62.8 42 78.6
Aa31LG2G13460 Aethionema arabicum HOM05D000113 ORTHO05D002571 6.8e-08 62.4 42 78.6
Migut.G00488 Erythranthe guttata HOM05D000113 ORTHO05D002571 6.8e-08 62.4 42 78.6
THA.LOC104812748 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 8.8e-08 62.0 49 71.4
RcHm_v2.0_Chr2g0092491 Rosa chinensis HOM05D000113 ORTHO05D002571 1.5e-07 61.2 44 68.2
Glyma.01G040900 Glycine max HOM05D000113 ORTHO05D002571 2.0e-07 60.8 41 75.6
FvH4_1g06760 Fragaria vesca HOM05D000113 ORTHO05D002571 2.6e-07 60.5 44 68.2
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 2.6e-07 60.5 38 81.6
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 2.6e-07 60.5 43 76.7
Atru.chr3.2014 Acer truncatum HOM05D000003 ORTHO05D000283 3.4e-07 60.1 78 37.2
BcaC05g27851 Brassica carinata HOM05D000113 ORTHO05D002571 3.4e-07 60.1 42 76.2
A05p24800 Brassica napus HOM05D000113 ORTHO05D002571 3.4e-07 60.1 42 76.2
C05p38490 Brassica napus HOM05D000113 ORTHO05D002571 3.4e-07 60.1 42 76.2
BolC5t32583H Brassica oleracea HOM05D000113 ORTHO05D002571 3.4e-07 60.1 42 76.2
BraA05t21363Z Brassica rapa HOM05D000113 ORTHO05D002571 3.4e-07 60.1 42 76.2
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 3.4e-07 60.1 45 71.1
CSS0042127 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 4.4e-07 59.7 33 84.8
FAN23G0734 Fragaria x ananassa HOM05D000113 ORTHO05D002571 4.4e-07 59.7 44 68.2
CSS0030678 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 5.7e-07 59.3 43 67.4
Prupe.8G103900 Prunus persica HOM05D000113 ORTHO05D002571 5.7e-07 59.3 59 57.6
Prupe.8G104500 Prunus persica HOM05D000113 ORTHO05D002571 7.5e-07 58.9 44 70.5
Medtr6g061840 Medicago truncatula HOM05D000113 ORTHO05D002571 9.8e-07 58.5 40 70.0
vmacro08575 Vaccinium macrocarpon HOM05D000742 ORTHO05D000924 9.8e-07 58.5 44 61.4
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 1.3e-06 58.2 42 71.4
FAN26G0487 Fragaria x ananassa HOM05D000113 ORTHO05D012125 1.7e-06 57.8 43 67.4
FAN26G1966 Fragaria x ananassa HOM05D000113 ORTHO05D012125 1.7e-06 57.8 43 67.4
MD02G1072500 Malus domestica HOM05D000113 ORTHO05D002571 1.7e-06 57.8 44 68.2
SEGI_02990 Sequoiadendron giganteum HOM05D000113 ORTHO05D002571 1.7e-06 57.8 43 67.4
SEGI_17413 Sequoiadendron giganteum HOM05D000113 ORTHO05D038446 1.7e-06 57.8 43 67.4
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.2e-06 57.4 40 80.0
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 2.2e-06 57.4 42 69.0
DCAR_003991 Daucus carota HOM05D000113 ORTHO05D002571 2.8e-06 57.0 47 63.8
Dinv01892 Davidia involucrata HOM05D000742 ORTHO05D000924 3.7e-06 56.6 38 71.1
Sopen09g005800 Solanum pennellii HOM05D000113 ORTHO05D002571 4.8e-06 56.2 59 57.6
Lalb_Chr07g0187381 Lupinus albus HOM05D000113 ORTHO05D002571 6.3e-06 55.8 43 65.1
CAN.G686.8 Capsicum annuum HOM05D000113 ORTHO05D002571 8.3e-06 55.5 59 55.9


User provided reference genes

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