Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1477.2 742 100.0
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1474.1 742 99.9
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1382.1 740 92.6
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1364.4 739 91.2
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1360.9 740 90.5
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1358.2 740 91.5
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1357.8 740 90.8
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1356.3 740 89.9
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1355.5 740 90.3
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1355.1 741 90.4
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1354.7 740 89.6
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1354.3 735 92.0
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1353.2 740 90.0
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1352.4 740 89.7
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1351.7 740 89.7
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1349.7 740 89.6
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1349.0 738 90.5
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1349.0 740 90.4
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1347.0 742 89.4
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1346.6 740 89.7
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1346.6 741 90.4
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1346.6 740 89.6
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1346.3 740 89.7
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1345.9 740 89.9
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1345.1 738 90.2
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1342.4 740 89.1
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1342.0 740 89.1
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1338.6 742 89.6
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1338.2 742 89.6
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1337.4 740 88.9
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1337.0 740 88.9
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1335.9 741 89.1
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1335.1 740 88.6
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1335.1 739 89.0
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1334.7 740 88.9
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1333.2 740 88.6
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1333.2 741 88.9
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1331.6 740 88.4
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1330.5 746 88.1
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1330.1 740 88.8
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1329.7 740 88.2
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1328.9 740 89.1
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1328.9 740 88.5
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1328.5 740 89.2
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1328.2 762 87.4
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1328.2 762 87.4
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1328.2 740 88.0
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 744 88.4
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1327.0 767 86.0
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1326.2 740 87.8
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1324.7 740 89.2
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1324.7 740 88.2
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 740 87.7
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1323.5 742 88.0
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1323.1 821 82.9
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1322.4 743 89.1
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1321.6 741 88.3
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 740 88.1
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1318.5 743 87.9
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1318.5 708 91.8
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1317.4 740 88.1
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1317.4 740 87.6
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1316.6 742 87.5
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1315.8 740 87.3
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1315.4 740 86.9
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1315.1 742 88.0
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1313.9 740 87.7
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1313.5 740 87.4
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1309.7 739 87.8
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 742 87.1
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1307.4 742 86.9
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1305.8 739 87.0
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1305.4 742 86.0
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1304.7 740 87.0
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1304.7 739 87.4
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1304.7 743 87.1
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 740 87.2
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 742 86.4
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 742 85.2
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 737 86.4
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1297.7 743 85.7
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 742 85.4
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1295.8 742 85.4
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1295.8 741 85.8
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1295.4 742 86.9
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 742 85.2
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 742 85.2
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1292.3 742 85.0
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1290.8 711 89.9
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1290.4 742 85.0
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1289.2 743 85.9
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 743 85.2
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 743 86.0
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1287.3 743 85.6
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1283.5 740 84.9
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1283.5 740 84.9
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1282.3 741 85.0
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1279.6 741 84.9
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1277.3 742 84.6
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1277.3 802 80.5
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1276.9 742 84.8
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1273.1 737 85.5
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1273.1 740 84.9
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1268.1 736 84.9
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1267.7 746 84.2
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1265.0 735 87.6
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1263.1 719 86.8
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1261.1 707 88.0
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 740 85.3
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 711 88.0
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1251.9 756 82.0
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1251.5 772 81.2
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1230.7 744 81.9
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1226.5 736 81.9
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1214.5 746 81.0
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1209.1 746 80.7
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1202.2 749 81.3
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1201.8 674 88.1
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1201.0 669 88.3
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1135.6 616 90.4
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1130.5 739 76.3
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1130.5 630 88.3
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1118.2 689 79.4
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1109.4 746 74.3
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1092.8 740 73.4
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 5.5e-309 1063.9 701 74.3
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 7.5e-298 1026.9 637 79.7
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 7.4e-245 850.9 668 63.3
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.0e-233 813.9 700 60.7
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.2e-232 808.5 540 78.5
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 7.7e-218 761.1 644 62.1
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 7.2e-216 754.6 740 57.4
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.0e-214 750.7 739 57.2
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.9e-214 748.8 522 74.5
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 9.7e-205 717.6 464 77.8
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 1.3e-204 717.2 453 80.4
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 8.1e-135 485.3 263 89.7
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 9.0e-134 481.9 432 60.6
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 4.4e-104 383.3 218 88.5
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.9e-83 314.7 578 37.0
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 6.8e-73 279.6 151 88.7
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 5.7e-72 276.6 143 93.0
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.3e-59 233.8 170 72.4
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 6.8e-41 173.3 294 37.8
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 2.9e-39 167.9 88 89.8
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 8.4e-39 166.4 98 80.6
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.9e-35 155.2 80 91.2
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.7e-28 132.1 80 78.8
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 3.9e-28 131.0 72 86.1
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 1.5e-24 119.0 71 80.3
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 2.9e-23 114.8 70 80.0
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.2e-21 109.4 69 72.5
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 2.3e-20 105.1 69 69.6
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 3.9e-20 104.4 108 53.7
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 8.7e-20 103.2 85 58.8
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 4.3e-19 100.9 228 33.8
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 2.8e-18 98.2 72 72.2
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 8.1e-18 96.7 85 55.3
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 6.9e-17 93.6 67 70.1
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 5.8e-16 90.5 67 67.2
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 3.2e-14 84.7 49 89.8
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 1.3e-12 79.3 47 85.1
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 2.3e-12 78.6 61 62.3
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 6.7e-12 77.0 47 76.6
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.5e-11 75.1 46 76.1
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.3e-11 74.7 45 77.8
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 2.8e-10 71.6 41 80.5
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 6.3e-10 70.5 43 72.1
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 5.3e-09 67.4 145 30.3
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 1.5e-08 65.9 33 93.9
ATR0561G078 Amborella trichopoda HOM05D004298 ORTHO05D065354 1.1e-06 59.7 71 45.1
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 7.2e-06 57.0 58 55.2


User provided reference genes

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