Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 2.0e-178 629.0 329 100.0
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 7.5e-133 477.6 317 81.1
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.0e-129 467.2 332 78.0
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 7.3e-128 461.1 330 71.2
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 1.8e-126 456.4 327 73.7
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.3e-126 456.1 329 75.4
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 2.3e-126 456.1 253 87.4
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 8.9e-126 454.1 309 73.8
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 3.4e-125 452.2 253 85.0
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.4e-125 451.8 346 68.2
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 7.5e-125 451.1 331 70.4
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 1.7e-124 449.9 332 70.5
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 2.2e-124 449.5 326 69.3
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 2.2e-124 449.5 334 69.8
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.2e-124 449.5 323 72.1
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.7e-124 448.7 328 73.5
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.1e-123 447.2 329 72.9
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.4e-123 446.8 253 85.8
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-123 446.8 326 69.0
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.4e-123 446.8 325 71.4
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 1.9e-123 446.4 327 74.3
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.2e-122 443.7 328 71.0
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.2e-122 443.7 323 71.2
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 1.6e-122 443.4 330 68.2
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.6e-122 443.4 336 68.5
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 4.6e-122 441.8 326 69.6
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 4.6e-122 441.8 321 70.4
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 7.8e-122 441.0 346 68.2
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 7.8e-122 441.0 336 69.0
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 1.7e-121 439.9 327 72.2
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.7e-121 439.9 328 72.9
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 2.3e-121 439.5 328 69.5
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 3.0e-121 439.1 274 79.2
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 6.6e-121 438.0 252 83.3
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 6.6e-121 438.0 331 68.6
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 6.6e-121 438.0 333 69.4
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 8.6e-121 437.6 328 69.5
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.5e-120 436.8 252 83.3
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.9e-120 436.4 252 83.3
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.9e-120 436.4 314 77.1
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 3.3e-120 435.6 309 71.8
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 7.3e-120 434.5 308 72.7
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.2e-119 433.7 330 71.2
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 4.7e-119 431.8 321 70.4
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 6.2e-119 431.4 327 68.2
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.4e-118 430.3 329 69.0
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.4e-118 430.3 329 69.0
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.4e-118 430.3 337 68.0
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.8e-118 429.9 329 68.7
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.8e-118 429.9 329 68.7
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 4.0e-118 428.7 282 76.6
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 3.4e-117 425.6 329 72.9
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 7.6e-117 424.5 247 81.4
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 7.6e-117 424.5 331 70.1
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.2e-116 422.9 287 72.5
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.8e-116 422.2 253 79.1
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 8.4e-116 421.0 334 66.8
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.9e-115 419.9 308 70.1
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 4.1e-115 418.7 333 66.4
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 5.4e-115 418.3 321 73.5
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 5.4e-115 418.3 252 78.6
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 4.6e-114 415.2 321 65.7
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 4.6e-114 415.2 325 70.8
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 6.0e-114 414.8 329 71.4
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 6.0e-114 414.8 325 65.2
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 6.0e-114 414.8 317 68.1
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 1.0e-113 414.1 312 72.8
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 3.0e-113 412.5 225 87.6
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 3.0e-113 412.5 329 70.5
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 3.9e-113 412.1 326 65.3
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 3.9e-113 412.1 223 87.0
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 5.1e-113 411.8 225 87.1
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 6.6e-113 411.4 334 67.1
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 8.7e-113 411.0 332 66.0
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 3.3e-112 409.1 328 65.9
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 4.3e-112 408.7 329 66.9
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.2e-111 407.1 222 86.0
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 1.6e-111 406.8 337 64.4
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 6.2e-111 404.8 274 72.3
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.1e-110 404.1 252 75.4
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 5.8e-109 398.3 320 63.8
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 1.1e-107 394.0 220 85.0
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 1.9e-104 383.3 309 63.8
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 6.2e-103 378.3 338 61.5
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 4.2e-99 365.5 205 85.4
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 8.7e-97 357.8 222 78.4
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 4.8e-95 352.1 210 80.0
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.8e-94 350.1 243 68.7
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.4e-94 349.7 244 68.4
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 3.1e-94 349.4 257 64.6
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 2.0e-93 346.7 494 47.4
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 3.4e-93 345.9 183 88.5
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.3e-89 333.2 323 56.7
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.9e-89 332.4 255 68.6
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 6.7e-89 331.6 323 57.0
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 8.7e-89 331.3 353 52.4
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.0e-81 307.8 253 63.6
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.9e-80 303.5 252 64.7
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.4e-78 297.4 225 60.4
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 4.1e-78 295.8 167 85.0
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.0e-76 291.2 251 55.0
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 7.9e-74 281.6 332 57.2
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 7.7e-69 265.0 251 51.8
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-66 257.7 211 60.2
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 4.7e-66 255.8 252 57.9
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.0e-65 254.6 217 68.7
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.0e-60 238.0 204 59.3
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.2e-60 236.9 246 56.1
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 3.2e-59 233.0 187 67.4
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 3.6e-58 229.6 208 52.9
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 7.4e-56 221.9 212 65.1
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.1e-46 189.5 196 54.1
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 2.2e-39 167.2 97 83.5
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 6.6e-36 155.6 108 74.1
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 2.1e-34 150.6 175 40.6
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.3e-27 126.7 154 45.5
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 1.0e-25 121.7 61 88.5
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.2e-24 118.2 105 61.0
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 7.8e-21 105.5 78 61.5
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 7.3e-19 99.0 158 44.3
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.4e-14 84.0 42 95.2
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.8e-09 65.9 68 51.5
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.8e-09 65.9 68 51.5


User provided reference genes

Program Settings