Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 2336.2 1322 100.0
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 2328.1 1322 99.7
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1518.4 1432 66.8
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1467.2 1356 67.4
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1368.2 1361 64.2
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1278.8 1197 68.4
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1261.1 1396 59.1
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1258.4 1360 59.4
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1256.9 1410 59.9
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1253.0 1368 59.1
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1249.6 1400 59.6
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1245.3 1390 60.6
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1241.5 1392 60.0
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1220.7 1353 58.1
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1220.7 1370 59.2
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1216.4 1403 57.6
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1206.0 1364 56.4
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1190.3 1294 60.4
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1189.9 1369 58.6
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1184.9 1375 58.3
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1179.1 1365 56.7
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1177.5 1400 57.0
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1177.2 1377 59.1
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1175.6 1361 58.3
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1175.2 1462 54.2
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1166.8 1395 56.7
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1166.8 1385 56.2
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1164.8 1380 55.7
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1154.8 1370 55.9
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1150.6 1376 58.2
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1150.2 1390 57.8
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1147.5 1390 58.1
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 0.0e+00 1135.9 1418 58.5
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1135.6 1358 55.6
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1132.5 1356 56.0
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 0.0e+00 1131.7 1344 58.1
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1122.8 1401 57.0
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1122.5 1405 57.2
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1120.9 1350 55.9
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 0.0e+00 1114.4 1206 57.7
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1114.0 1386 57.3
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1111.7 1347 56.2
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1108.2 1349 54.1
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1105.9 1357 54.5
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1105.5 1425 55.9
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1104.0 1363 54.3
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1102.4 1377 54.4
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1097.8 1430 55.6
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 0.0e+00 1094.7 1416 55.6
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1094.0 1357 53.3
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 0.0e+00 1079.3 1358 52.6
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1075.8 1381 53.8
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 9.0e-312 1073.5 1348 52.6
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 8.1e-311 1070.8 1375 53.5
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 1.8e-310 1069.7 1384 57.9
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 2.4e-310 1069.3 1381 53.5
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 5.2e-310 1068.1 1494 51.1
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 2.6e-309 1065.8 1349 53.6
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 6.4e-308 1061.2 1364 55.0
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 4.1e-307 1058.5 1343 53.1
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 1.3e-305 1053.5 1365 53.0
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 1.7e-305 1053.1 1367 52.5
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 8.7e-305 1050.8 1022 61.5
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 1.1e-302 1043.9 1398 51.6
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.8e-302 1043.1 1153 53.6
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.8e-302 1043.1 1326 54.0
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 6.9e-302 1041.2 1349 53.4
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 9.3e-299 1030.8 1146 56.4
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.0e-297 1025.8 1221 54.1
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 1.9e-296 1023.1 1411 51.1
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 4.0e-294 1015.4 1349 51.5
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 1.3e-281 973.8 1425 47.2
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 1.1e-278 964.1 1356 48.7
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 2.6e-277 959.5 1222 55.1
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 2.6e-277 959.5 1353 47.5
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.1e-274 949.9 1032 61.9
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 6.0e-274 948.3 903 58.5
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 1.1e-272 944.1 1387 50.5
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 3.7e-271 939.1 1377 50.8
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 1.8e-270 936.8 1420 47.9
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 7.2e-267 924.9 1482 46.0
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.2e-266 924.1 1378 48.9
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 1.6e-266 923.7 1491 45.3
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 3.9e-265 919.1 1406 47.8
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 1.1e-264 917.5 1383 48.6
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 2.8e-263 912.9 1416 46.8
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.8e-262 910.2 1393 48.2
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 5.9e-261 905.2 1415 47.4
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 2.9e-260 902.9 1417 47.3
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 2.3e-257 893.3 1384 47.4
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 6.7e-257 891.7 1380 46.7
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 6.7e-257 891.7 1380 46.7
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 4.4e-256 889.0 1372 47.4
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 4.4e-256 889.0 1396 47.2
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 5.7e-256 888.6 1412 47.8
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 5.7e-256 888.6 1376 47.5
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 7.7e-253 878.2 1342 45.3
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.0e-249 867.8 1351 51.4
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 3.9e-249 865.9 1392 49.2
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 5.2e-249 865.5 1364 45.4
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 4.8e-247 859.0 1350 49.2
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.0e-244 851.3 1362 44.9
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.3e-244 850.9 1365 46.8
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.4e-238 830.9 1285 45.1
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 5.3e-238 828.9 1360 48.1
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.2e-237 827.8 1070 55.1
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 9.4e-235 818.1 969 51.6
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.6e-234 817.4 1295 44.9
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 1.6e-226 790.8 789 58.9
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.3e-212 743.8 1109 48.0
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.3e-211 740.0 1342 41.1
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.5e-200 704.5 1372 42.1
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 1.3e-199 701.4 1375 42.5
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.5e-195 688.0 916 48.1
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 7.6e-192 675.6 1206 42.5
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 2.7e-189 667.2 1001 44.5
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.9e-174 617.8 787 49.6
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 1.3e-164 585.1 1209 39.0
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 3.5e-157 560.5 1290 39.0
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 3.9e-156 557.0 546 60.8
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 2.5e-155 554.3 1241 39.5
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 2.8e-146 524.2 914 48.9
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 8.5e-143 512.7 1359 38.0
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.1e-141 508.1 1366 36.1
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.5e-136 490.3 308 83.4
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 7.7e-136 489.6 1262 35.8
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 4.2e-118 430.6 1444 31.9
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 4.2e-118 430.6 1384 32.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.0e-99 368.6 412 52.7
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.3e-95 355.1 1394 31.4
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.8e-93 348.2 1205 32.4
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 3.2e-89 334.7 496 45.4
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.4e-76 292.7 893 30.3
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.4e-75 287.7 1310 31.6
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 3.5e-72 278.1 196 75.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.0e-71 276.6 397 45.6
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 5.1e-71 274.2 952 29.3
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 2.8e-69 268.5 1086 28.4
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 6.2e-61 240.7 892 27.5
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.1e-60 238.4 208 64.9
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.6e-59 235.3 1123 28.9
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 2.9e-58 231.9 913 28.7
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 3.8e-58 231.5 552 32.6
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 6.4e-58 230.7 534 35.4
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 5.5e-57 227.6 361 41.6
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 7.4e-54 217.2 849 27.4
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 8.1e-53 213.8 586 44.4
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 5.3e-52 211.1 444 38.7
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 7.6e-51 207.2 426 36.4
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 7.6e-51 207.2 214 56.5
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 8.4e-50 203.8 850 27.3
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 4.2e-49 201.4 557 31.4
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 4.3e-46 191.4 685 27.7
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 1.6e-45 189.5 236 46.2
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 5.9e-43 181.0 158 60.8
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 1.2e-40 173.3 779 27.1
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 6.1e-40 171.0 998 24.8
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.4e-36 159.8 659 27.0
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 5.3e-36 157.9 205 67.8
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 1.2e-32 146.7 213 52.1
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.0e-31 143.7 360 40.8
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 4.8e-29 134.8 1365 25.9
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 5.3e-28 131.3 939 24.8
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 8.5e-26 124.0 1383 26.0
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 8.5e-26 124.0 151 49.7
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 1.2e-24 120.2 1076 23.6
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 9.7e-22 110.5 177 34.5
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 9.1e-20 104.0 125 42.4
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.0e-18 100.5 88 54.5
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 1.7e-18 99.8 139 44.6
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 3.2e-17 95.5 131 50.4
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 5.5e-17 94.7 90 53.3
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.7e-13 83.2 268 36.2
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 1.8e-12 79.7 86 45.3
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 3.5e-11 75.5 485 25.6
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 3.8e-10 72.0 77 48.1
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 1.2e-08 67.0 252 34.5


User provided reference genes

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