Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036481 Camellia sinensis var. sinensis HOM05D005272 ORTHO05D006890 3.4e-112 408.3 200 100.0
CSS0024741 Camellia sinensis var. sinensis HOM05D005272 ORTHO05D006890 5.1e-108 394.4 214 92.5
Dinv05203 Davidia involucrata HOM05D005272 ORTHO05D006890 3.1e-65 252.3 134 88.8
Hma1.2p1_1114F.1_g258750 Hydrangea macrophylla HOM05D005272 ORTHO05D006890 5.3e-65 251.5 134 88.1
Rhsim04G0168600 Rhododendron simsii HOM05D005272 ORTHO05D006890 9.1e-65 250.8 146 84.2
GSVIVG01018859001 Vitis vinifera HOM05D005272 ORTHO05D006890 2.2e-63 246.1 136 84.6
Rhsim13G0235800 Rhododendron simsii HOM05D005272 ORTHO05D006890 3.8e-63 245.4 145 83.4
Gohir.A10G096700 Gossypium hirsutum HOM05D005272 ORTHO05D006890 1.1e-62 243.8 137 83.9
Peaxi162Scf01079g00214 Petunia axillaris HOM05D005272 ORTHO05D006890 1.1e-62 243.8 134 83.6
CiPaw.07G053400 Carya illinoinensis HOM05D005272 ORTHO05D006890 1.5e-62 243.4 135 86.7
Cc07_g10140 Coffea canephora HOM05D005272 ORTHO05D006890 1.9e-62 243.0 134 85.1
Sc03g0003260 Simmondsia chinensis HOM05D005272 ORTHO05D006890 2.5e-62 242.7 136 82.4
Solyc02g062430.3 Solanum lycopersicum HOM05D005272 ORTHO05D006890 2.5e-62 242.7 134 83.6
Sopen02g013430 Solanum pennellii HOM05D005272 ORTHO05D006890 2.5e-62 242.7 134 83.6
Gohir.D10G091400 Gossypium hirsutum HOM05D005272 ORTHO05D006890 4.2e-62 241.9 137 83.9
Aqoxy5G01527 Aquilegia oxysepala HOM05D005272 ORTHO05D006890 7.2e-62 241.1 134 86.6
Duzib187G1472 Durio zibethinus HOM05D005272 ORTHO05D006890 7.2e-62 241.1 131 85.5
PGSC0003DMG400015514 Solanum tuberosum HOM05D005272 ORTHO05D006890 7.2e-62 241.1 134 83.6
Atru.chr3.734 Acer truncatum HOM05D005272 ORTHO05D006890 9.4e-62 240.7 136 81.6
TAR381G0099 Trochodendron aralioides HOM05D005272 ORTHO05D006890 1.2e-61 240.4 133 85.0
MELO3C016408.2 Cucumis melo HOM05D005272 ORTHO05D006890 1.6e-61 240.0 134 85.1
CsaV3_4G005410 Cucumis sativus L. HOM05D005272 ORTHO05D006890 1.6e-61 240.0 134 84.3
TWI60G1562 Tripterygium wilfordii HOM05D005272 ORTHO05D006890 1.6e-61 240.0 133 84.2
Haze_03835 Corylus avellana HOM05D005272 ORTHO05D006890 2.7e-61 239.2 134 83.6
CAN.G408.3 Capsicum annuum HOM05D005272 ORTHO05D006890 3.6e-61 238.8 134 82.8
vmacro01069 Vaccinium macrocarpon HOM05D005272 ORTHO05D006890 3.6e-61 238.8 166 74.1
ClCG07G008770 Citrullus lanatus HOM05D005272 ORTHO05D006890 6.1e-61 238.0 134 84.3
Potri.007G018600 Populus trichocarpa HOM05D005272 ORTHO05D006890 1.0e-60 237.3 134 83.6
Cpa.g.sc6.186 Carica papaya HOM05D005272 ORTHO05D006890 1.4e-60 236.9 134 82.8
ECA238G0324 Erigeron canadensis HOM05D005272 ORTHO05D006890 1.4e-60 236.9 137 83.2
Thecc.01G026600 Theobroma cacao HOM05D005272 ORTHO05D006890 1.8e-60 236.5 134 82.1
Ciclev10025317m.g Citrus clementina HOM05D005272 ORTHO05D006890 2.3e-60 236.1 135 81.5
Nn1g05787 Nelumbo nucifera HOM05D005272 ORTHO05D006890 2.3e-60 236.1 134 81.3
Manes.01G140700 Manihot esculenta HOM05D005272 ORTHO05D006890 3.0e-60 235.7 136 80.9
AUR62007628 Chenopodium quinoa HOM05D005272 ORTHO05D006890 4.0e-60 235.3 136 80.1
Sabra07G0015700 Salix brachista HOM05D005272 ORTHO05D006890 4.0e-60 235.3 134 83.6
QL06p034856 Quercus lobata HOM05D005272 ORTHO05D006890 5.2e-60 235.0 136 82.4
QL10p007431 Quercus lobata HOM05D005272 ORTHO05D006890 5.2e-60 235.0 136 82.4
QL06p034836 Quercus lobata HOM05D005272 ORTHO05D006890 8.8e-60 234.2 134 82.1
QL10p007416 Quercus lobata HOM05D005272 ORTHO05D006890 8.8e-60 234.2 134 82.1
RcHm_v2.0_Chr2g0100131 Rosa chinensis HOM05D005272 ORTHO05D006890 8.8e-60 234.2 134 82.8
Lsat_1_v5_gn_2_78121 Lactuca sativa HOM05D005272 ORTHO05D006890 1.2e-59 233.8 137 79.6
Nitab4.5_0000136g0150 Nicotiana tabacum HOM05D005272 ORTHO05D006890 1.2e-59 233.8 134 83.6
Hund16459 Selenicereus undatus HOM05D005272 ORTHO05D006890 1.2e-59 233.8 136 78.7
Sed0020582 Sechium edule HOM05D005272 ORTHO05D006890 2.0e-59 233.0 136 81.6
MBI04_g26283_MAGBIO Magnolia biondii HOM05D005272 ORTHO05D006890 2.6e-59 232.6 130 83.1
DCAR_017317 Daucus carota HOM05D005272 ORTHO05D006890 4.4e-59 231.9 133 81.2
MSTRG.23263 Avicennia marina HOM05D005272 ORTHO05D006890 5.7e-59 231.5 134 81.3
CANSAT01G2901 Cannabis sativa HOM05D005272 ORTHO05D006890 5.7e-59 231.5 137 79.6
Migut.H02506 Erythranthe guttata HOM05D005272 ORTHO05D006890 5.7e-59 231.5 135 80.7
Prupe.7G162700 Prunus persica HOM05D005272 ORTHO05D006890 9.7e-59 230.7 137 80.3
VMungo1215G0635 Vigna mungo HOM05D005272 ORTHO05D006890 9.7e-59 230.7 137 78.8
arahy.Tifrunner.gnm1.ann1.4MV4X2 Arachis hypogaea HOM05D005272 ORTHO05D006890 1.3e-58 230.3 133 81.2
arahy.Tifrunner.gnm1.ann1.CVF5QE Arachis hypogaea HOM05D005272 ORTHO05D006890 1.3e-58 230.3 133 81.2
PSO170G5749 Papaver somniferum HOM05D005272 ORTHO05D006890 1.3e-58 230.3 134 81.3
FvH4_1g12310 Fragaria vesca HOM05D005272 ORTHO05D006890 1.7e-58 229.9 134 80.6
FAN19G2225 Fragaria x ananassa HOM05D005272 ORTHO05D006890 1.7e-58 229.9 134 80.6
FAN23G1388 Fragaria x ananassa HOM05D005272 ORTHO05D006890 1.7e-58 229.9 134 80.6
FAN28G0729 Fragaria x ananassa HOM05D005272 ORTHO05D006890 1.7e-58 229.9 134 80.6
Nitab4.5_0009648g0010 Nicotiana tabacum HOM05D005272 ORTHO05D006890 2.2e-58 229.6 134 82.1
PGR119G2315 Punica granatum HOM05D005272 ORTHO05D006890 2.2e-58 229.6 134 82.1
FAN26G2090 Fragaria x ananassa HOM05D005272 ORTHO05D006890 2.8e-58 229.2 134 80.6
Phvul.005G099900 Phaseolus vulgaris HOM05D005272 ORTHO05D006890 3.7e-58 228.8 137 77.4
MD15G1251700 Malus domestica HOM05D005272 ORTHO05D006890 6.3e-58 228.0 133 82.0
Eucgr.I02388 Eucalyptus grandis HOM05D005272 ORTHO05D006890 1.8e-57 226.5 132 80.3
Eucgr.I02389 Eucalyptus grandis HOM05D005272 ORTHO05D006890 1.8e-57 226.5 136 77.9
PGR119G0710 Punica granatum HOM05D005272 ORTHO05D006890 2.4e-57 226.1 134 80.6
ATR0665G208 Amborella trichopoda HOM05D005272 ORTHO05D006890 4.1e-57 225.3 134 79.1
Lj2g0009312 Lotus japonicus HOM05D005272 ORTHO05D006890 9.1e-57 224.2 137 78.1
CDE07G0649 Ceratophyllum demersum HOM05D005272 ORTHO05D006890 1.2e-56 223.8 133 78.2
Ca_24889_v3 Cicer arietinum L. HOM05D005272 ORTHO05D006890 1.2e-56 223.8 137 75.2
Glyma.01G169800 Glycine max HOM05D005272 ORTHO05D006890 2.7e-56 222.6 137 76.6
SalBow8G2913 Salvia bowleyana HOM05D005272 ORTHO05D006890 3.5e-56 222.2 134 78.4
TPR.G2387 Trifolium pratense HOM05D005272 ORTHO05D006890 4.5e-56 221.9 137 73.7
EL10As8g23880 Beta vulgaris HOM05D005272 ORTHO05D006890 1.7e-55 219.9 172 64.0
THA.LOC104807474 Tarenaya hassleriana HOM05D005272 ORTHO05D006890 2.2e-55 219.5 134 76.1
Lalb_Chr09g0322041 Lupinus albus HOM05D005272 ORTHO05D006890 3.8e-55 218.8 137 75.2
Zm00001eb302200 Zea mays HOM05D005272 ORTHO05D006890 5.0e-55 218.4 134 77.6
Medtr5g021240 Medicago truncatula HOM05D005272 ORTHO05D006890 8.5e-55 217.6 137 73.0
Os07g0187200 Oryza sativa ssp. japonica HOM05D005272 ORTHO05D006890 1.1e-54 217.2 134 77.6
CARHR244730 Cardamine hirsuta HOM05D005272 ORTHO05D006890 2.5e-54 216.1 134 73.9
Psat0s3355g0040 Pisum sativum HOM05D005272 ORTHO05D006890 5.5e-54 214.9 130 76.2
Aa31LG6G13200 Aethionema arabicum HOM05D005272 ORTHO05D006890 7.2e-54 214.5 134 75.4
AT4G36400 Arabidopsis thaliana HOM05D005272 ORTHO05D006890 1.2e-53 213.8 134 75.4
AL7G14690 Arabidopsis lyrata HOM05D005272 ORTHO05D006890 2.7e-53 212.6 134 74.6
Phvul.002G112400 Phaseolus vulgaris HOM05D005272 ORTHO05D006890 2.7e-53 212.6 133 74.4
Thhalv10024815m.g Eutrema salsugineum HOM05D005272 ORTHO05D006890 3.6e-53 212.2 133 75.2
Carub.0007s0391 Capsella rubella HOM05D005272 ORTHO05D006890 4.7e-53 211.8 134 73.9
Sp7g34060 Schrenkiella parvula HOM05D005272 ORTHO05D006890 5.2e-52 208.4 136 72.1
SEGI_12840 Sequoiadendron giganteum HOM05D005272 ORTHO05D006890 2.0e-51 206.5 132 72.7
Lj4A210T35 Lonicera japonica HOM05D005272 ORTHO05D006890 5.7e-51 204.9 116 83.6
BraA03t15492Z Brassica rapa HOM05D005272 ORTHO05D006890 2.2e-50 203.0 133 72.9
BolC7t46592H Brassica oleracea HOM05D005272 ORTHO05D006890 3.1e-49 199.1 139 69.8
Gorai.011G100400 Gossypium raimondii HOM05D005272 ORTHO05D006890 4.1e-49 198.7 109 84.4
COL.COLO4_21995 Corchorus olitorius HOM05D005272 ORTHO05D002654 5.9e-48 194.9 107 83.2
Ah.03g141540 Amaranthus hybridus HOM05D005272 ORTHO05D006890 1.0e-47 194.1 109 80.7
AagrBONN_evm.TU.Sc2ySwM_344.3428 Anthoceros agrestis HOM05D005272 ORTHO05D006890 1.3e-47 193.7 130 67.7
HanXRQChr07g0190391 Helianthus annuus HOM05D005272 ORTHO05D006890 5.0e-47 191.8 109 81.7
AUR62004113 Chenopodium quinoa HOM05D005272 ORTHO05D006890 1.1e-46 190.7 106 81.1
Mapoly0113s0062 Marchantia polymorpha HOM05D005272 ORTHO05D006890 1.5e-46 190.3 131 67.9
Pp3c26_11820 Physcomitrium patens HOM05D005272 ORTHO05D006890 3.0e-44 182.6 131 63.4
SMO364G0024 Selaginella moellendorffii HOM05D005272 ORTHO05D006890 7.5e-43 177.9 128 66.4
CBR_g3549 Chara braunii HOM05D005272 ORTHO05D006890 5.4e-41 171.8 131 60.3
Cre08.g370550 Chlamydomonas reinhardtii HOM05D005272 ORTHO05D006890 1.7e-39 166.8 183 49.7
A03p64220 Brassica napus HOM05D005272 ORTHO05D006890 1.2e-37 160.6 107 70.1
C07p61680 Brassica napus HOM05D005272 ORTHO05D006890 1.2e-37 160.6 107 70.1
MCO05G403 Micromonas commoda HOM05D005272 ORTHO05D006890 2.0e-35 153.3 155 51.0
PRCOL_00001074 Prasinoderma coloniale HOM05D005272 ORTHO05D006890 9.8e-35 151.0 138 52.2
Cfa023942 Carpinus fangiana HOM05D005272 ORTHO05D006890 1.7e-26 123.6 138 44.9
Glyma.11G073500 Glycine max HOM05D005272 ORTHO05D006890 4.1e-25 119.0 76 75.0
unitig_899.g14635 Utricularia gibba HOM05D005272 ORTHO05D006890 2.3e-23 113.2 100 60.0
Rhsim09G0214700 Rhododendron simsii HOM05D005272 ORTHO05D006890 6.8e-20 101.7 50 92.0
SMO364G0343 Selaginella moellendorffii HOM05D005272 ORTHO05D006890 1.3e-15 87.4 65 61.5
arahy.Tifrunner.gnm1.ann1.J41GPI Arachis hypogaea HOM05D030158 ORTHO05D006890 9.2e-09 64.7 43 69.8
Mapoly0056s0055 Marchantia polymorpha HOM05D004834 ORTHO05D006247 9.2e-09 64.7 163 25.8
unitig_899.g14634 Utricularia gibba HOM05D001473 ORTHO05D003900 1.6e-08 63.9 61 55.7
Ah.02g115150 Amaranthus hybridus HOM05D004834 ORTHO05D006247 1.3e-07 60.8 120 30.0
Cfa026190 Carpinus fangiana HOM05D004834 ORTHO05D006247 1.3e-07 60.8 118 26.3
Hund10783 Selenicereus undatus HOM05D004834 ORTHO05D006247 1.7e-07 60.5 120 29.2
ECA238G0502 Erigeron canadensis HOM05D004834 ORTHO05D006247 3.0e-07 59.7 120 30.0
CSS0029343 Camellia sinensis var. sinensis HOM05D004834 ORTHO05D006247 3.9e-07 59.3 120 30.0
Lsat_1_v5_gn_2_102000 Lactuca sativa HOM05D004834 ORTHO05D006247 3.9e-07 59.3 119 28.6
MBI11_g39498_MAGBIO Magnolia biondii HOM05D004834 ORTHO05D006247 3.9e-07 59.3 168 25.6
TPR.G14418 Trifolium pratense HOM05D004834 ORTHO05D006247 3.9e-07 59.3 120 30.0
GSVIVG01022507001 Vitis vinifera HOM05D004834 ORTHO05D006247 3.9e-07 59.3 119 28.6
Cc06_g07030 Coffea canephora HOM05D004834 ORTHO05D006247 5.1e-07 58.9 120 30.0
QL07p026067 Quercus lobata HOM05D004834 ORTHO05D006247 5.1e-07 58.9 119 27.7
Lalb_Chr20g0111191 Lupinus albus HOM05D004834 ORTHO05D006247 8.7e-07 58.2 120 30.0
AUR62036303 Chenopodium quinoa HOM05D004834 ORTHO05D006247 1.1e-06 57.8 120 28.3
Oeu035654.3 Olea europaea HOM05D004834 ORTHO05D006247 1.1e-06 57.8 119 28.6
Phvul.001G199000 Phaseolus vulgaris HOM05D004834 ORTHO05D006247 1.1e-06 57.8 120 30.0
Ca_09087_v3 Cicer arietinum L. HOM05D004834 ORTHO05D006247 1.5e-06 57.4 120 29.2
HanXRQChr14g0453201 Helianthus annuus HOM05D004834 ORTHO05D006247 1.5e-06 57.4 120 29.2
Manes.09G041400 Manihot esculenta HOM05D004834 ORTHO05D006247 1.5e-06 57.4 119 28.6
Medtr7g107050 Medicago truncatula HOM05D004834 ORTHO05D006247 1.5e-06 57.4 120 29.2
Pp3c24_4090 Physcomitrium patens HOM05D004834 ORTHO05D006247 1.5e-06 57.4 121 27.3
VMungo1383G2386 Vigna mungo HOM05D004834 ORTHO05D006247 1.5e-06 57.4 120 30.0
Actinidia03850 Actinidia chinensis HOM05D004834 ORTHO05D006247 1.9e-06 57.0 120 30.0
AUR62038413 Chenopodium quinoa HOM05D004834 ORTHO05D006247 1.9e-06 57.0 120 27.5
Migut.J00722 Erythranthe guttata HOM05D004834 ORTHO05D006247 1.9e-06 57.0 122 27.9
PSO384G0426 Papaver somniferum HOM05D004834 ORTHO05D006247 1.9e-06 57.0 121 29.8
TWI53G0913 Tripterygium wilfordii HOM05D004834 ORTHO05D006247 1.9e-06 57.0 120 30.0
Cfa024396 Carpinus fangiana HOM05D001072 ORTHO05D006247 2.5e-06 56.6 197 25.4
SGA_v2.0_scaffold112G31558 Striga asiatica HOM05D004834 ORTHO05D006247 2.5e-06 56.6 119 28.6
TAR633G1355 Trochodendron aralioides HOM05D004834 ORTHO05D006247 2.5e-06 56.6 120 29.2
Gohir.D09G128200 Gossypium hirsutum HOM05D004834 ORTHO05D006247 3.3e-06 56.2 119 27.7
Pp3c20_18170 Physcomitrium patens HOM05D004834 ORTHO05D006247 3.3e-06 56.2 152 23.7
Psat3g026160 Pisum sativum HOM05D004834 ORTHO05D006247 3.3e-06 56.2 119 27.7
Rhsim03G0058100 Rhododendron simsii HOM05D004834 ORTHO05D006247 3.3e-06 56.2 120 30.0
unitig_26.g9147 Utricularia gibba HOM05D004834 ORTHO05D006247 3.3e-06 56.2 153 27.5
AL6G16670 Arabidopsis lyrata HOM05D004834 ORTHO05D006247 4.3e-06 55.8 119 28.6
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 4.3e-06 55.8 120 29.2
Thhalv10013121m.g Eutrema salsugineum HOM05D004834 ORTHO05D006247 4.3e-06 55.8 119 27.7
vmacro07522 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 4.3e-06 55.8 154 26.6
Atru.chr8.1261 Acer truncatum HOM05D004834 ORTHO05D006247 5.6e-06 55.5 119 27.7
CANSAT64G2176 Cannabis sativa HOM05D004834 ORTHO05D006247 5.6e-06 55.5 119 27.7
Cpa.g.sc222.7 Carica papaya HOM05D004834 ORTHO05D006247 5.6e-06 55.5 119 27.7
Cfa020095 Carpinus fangiana HOM05D004834 ORTHO05D006247 5.6e-06 55.5 120 28.3
CiPaw.09G024600 Carya illinoinensis HOM05D004834 ORTHO05D006247 5.6e-06 55.5 120 28.3
FAN05G2138 Fragaria x ananassa HOM05D004834 ORTHO05D006247 5.6e-06 55.5 119 27.7
FAN05G4019 Fragaria x ananassa HOM05D004834 ORTHO05D006247 5.6e-06 55.5 119 27.7
TAR636G2709 Trochodendron aralioides HOM05D004834 ORTHO05D006247 5.6e-06 55.5 120 29.2
HPP92_012150 Vanilla planifolia HOM05D004834 ORTHO05D006247 5.6e-06 55.5 119 27.7
AT5G06580 Arabidopsis thaliana HOM05D004834 ORTHO05D006247 7.3e-06 55.1 119 27.7
CANSAT64G0017 Cannabis sativa HOM05D004834 ORTHO05D006247 7.3e-06 55.1 119 27.7
Carub.0006s0546 Capsella rubella HOM05D004834 ORTHO05D006247 7.3e-06 55.1 119 26.9
Cre10.g434900 Chlamydomonas reinhardtii HOM05D004834 ORTHO05D006247 7.3e-06 55.1 122 28.7
Nn2g14430 Nelumbo nucifera HOM05D004834 ORTHO05D006247 7.3e-06 55.1 119 26.1
AagrBONN_evm.TU.Sc2ySwM_228.4653 Anthoceros agrestis HOM05D004834 ORTHO05D006247 9.6e-06 54.7 122 27.0
Aqoxy1G00576 Aquilegia oxysepala HOM05D004834 ORTHO05D006247 9.6e-06 54.7 119 25.2
Hma1.2p1_0304F.1_g119280 Hydrangea macrophylla HOM05D004834 ORTHO05D006247 9.6e-06 54.7 120 28.3
PGSC0003DMG403008663 Solanum tuberosum HOM05D004834 ORTHO05D006247 9.6e-06 54.7 119 26.1
THA.LOC104799266 Tarenaya hassleriana HOM05D004834 ORTHO05D006247 9.6e-06 54.7 119 27.7
Thecc.05G183400 Theobroma cacao HOM05D004834 ORTHO05D006247 9.6e-06 54.7 119 27.7
Zm00001eb117230 Zea mays HOM05D004834 ORTHO05D006247 9.6e-06 54.7 119 27.7


User provided reference genes

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