Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.2e-195 684.5 339 100.0
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.1e-150 535.4 339 81.4
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.0e-148 530.4 339 79.9
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 3.4e-144 515.4 341 80.1
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 2.1e-138 496.1 339 76.7
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 3.4e-136 488.8 344 76.2
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 4.9e-135 485.0 339 73.5
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 2.4e-134 482.6 339 72.3
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 2.4e-134 482.6 339 72.3
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 2.9e-132 475.7 339 72.3
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 5.0e-132 474.9 339 72.9
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 2.5e-131 472.6 341 71.8
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 3.3e-131 472.2 339 71.7
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 5.6e-131 471.5 339 71.7
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 4.7e-130 468.4 340 72.9
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 8.0e-130 467.6 339 72.0
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 2.0e-128 463.0 339 72.6
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.3e-127 460.3 341 70.1
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 2.2e-127 459.5 340 72.9
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 2.9e-127 459.1 340 70.3
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 2.4e-126 456.1 338 71.9
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 4.6e-125 451.8 340 70.0
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 6.0e-125 451.4 340 68.8
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 6.0e-125 451.4 350 71.7
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.0e-124 450.7 339 70.8
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.3e-124 450.3 340 69.7
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-124 449.9 340 68.5
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 1.7e-124 449.9 341 70.1
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 5.0e-124 448.4 340 69.1
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 8.6e-124 447.6 340 68.8
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 1.5e-123 446.8 340 70.3
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.2e-122 443.7 340 69.7
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.6e-122 443.4 340 68.5
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.6e-122 442.2 341 68.9
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.1e-121 440.7 340 67.9
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.1e-121 440.7 340 67.9
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 4.0e-121 438.7 347 68.9
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 6.8e-121 438.0 341 68.0
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 8.9e-121 437.6 341 69.5
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 8.9e-121 437.6 345 69.3
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 3.4e-120 435.6 339 68.7
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 3.4e-120 435.6 340 67.6
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 4.4e-120 435.3 340 67.9
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 5.8e-120 434.9 340 68.5
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 7.5e-120 434.5 339 67.3
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 7.5e-120 434.5 340 67.1
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.2e-119 433.0 340 67.9
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 2.9e-119 432.6 340 67.9
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.9e-119 431.8 340 67.9
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 6.4e-119 431.4 339 69.0
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 8.3e-119 431.0 340 66.8
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.1e-118 430.6 341 66.6
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.1e-118 430.6 359 68.0
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.1e-118 430.6 331 67.7
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.2e-118 429.1 343 69.1
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 7.0e-118 427.9 339 66.1
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.2e-117 427.2 343 67.3
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.6e-117 426.8 341 65.1
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.6e-117 426.8 342 65.5
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 3.5e-117 425.6 339 64.6
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 4.6e-117 425.2 340 67.1
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 6.0e-117 424.9 341 66.6
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.0e-116 424.1 340 67.6
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 2.3e-116 422.9 341 66.0
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 6.6e-116 421.4 340 65.3
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 6.6e-116 421.4 343 66.8
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 3.3e-115 419.1 338 66.0
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 4.3e-115 418.7 344 66.3
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 4.3e-115 418.7 341 67.2
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 9.5e-115 417.5 342 65.2
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.5e-115 417.5 325 67.7
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 9.5e-115 417.5 338 64.5
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 1.2e-114 417.2 340 64.7
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.6e-114 416.8 342 64.9
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 2.1e-114 416.4 342 65.2
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.8e-114 416.0 341 64.8
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 3.6e-114 415.6 342 65.8
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.7e-114 415.2 342 65.2
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.4e-113 413.7 341 65.7
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.4e-113 413.7 339 65.2
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.8e-113 413.3 342 65.2
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 3.1e-113 412.5 343 65.3
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 6.8e-113 411.4 341 64.2
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 6.8e-113 411.4 342 64.6
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 8.9e-113 411.0 343 64.1
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 9.9e-112 407.5 341 64.8
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 1.3e-111 407.1 342 65.2
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 2.9e-111 406.0 340 65.0
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.9e-111 405.2 338 64.5
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.4e-110 402.9 342 63.7
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 4.1e-110 402.1 346 64.7
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 4.1e-110 402.1 331 65.9
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 5.4e-110 401.7 334 65.0
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 5.4e-110 401.7 334 65.0
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.2e-109 400.6 337 64.4
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.6e-109 400.2 338 63.0
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 2.7e-109 399.4 386 58.3
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 3.0e-108 396.0 355 60.3
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 3.0e-108 396.0 362 61.6
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.6e-108 394.8 338 63.0
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 4.3e-107 392.1 355 60.8
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 7.3e-107 391.3 361 58.7
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 7.3e-107 391.3 361 58.7
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 2.4e-105 386.3 343 62.1
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 6.8e-105 384.8 293 71.3
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 6.4e-103 378.3 341 62.2
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 8.7e-100 367.9 359 60.2
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 3.6e-98 362.5 359 59.1
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 3.6e-98 362.5 342 57.3
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 3.1e-97 359.4 346 59.0
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 4.4e-96 355.5 340 58.5
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.4e-94 350.5 327 56.3
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 3.2e-94 349.4 270 69.3
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 5.1e-92 342.0 359 54.3
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 5.3e-89 332.0 331 57.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.0e-81 305.8 239 67.8
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.9e-79 298.9 237 68.4
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 5.1e-76 288.9 330 55.8
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 1.3e-71 274.2 215 66.5
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 2.3e-68 263.5 355 45.1
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 8.7e-68 261.5 259 59.5
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 3.7e-66 256.1 255 57.3
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 2.2e-63 246.9 193 66.3
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 6.3e-58 228.8 359 41.2
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.1e-57 228.0 185 62.7
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 6.9e-57 225.3 381 40.4
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.3e-55 221.1 350 41.1
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 5.0e-55 219.2 352 41.5
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 2.1e-53 213.8 362 42.3
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 2.0e-51 207.2 225 51.1
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 4.1e-49 199.5 225 51.6
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.1e-43 181.4 353 38.2
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 2.7e-37 160.2 175 48.6
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 2.4e-33 147.1 359 33.4
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 4.2e-30 136.3 345 35.1
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 2.3e-28 130.6 351 33.0
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 2.4e-25 120.6 131 49.6
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 2.7e-24 117.1 156 45.5
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 5.9e-24 115.9 110 60.9
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-23 114.4 106 53.8
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.9e-22 110.9 87 60.9
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 4.2e-22 109.8 85 64.7
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.0e-20 103.6 87 56.3
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 9.8e-19 98.6 125 44.8
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.2e-16 91.7 110 52.7
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 1.3e-15 88.2 150 34.0
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 2.3e-15 87.4 72 59.7
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 8.6e-15 85.5 52 76.9
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 8.6e-15 85.5 80 57.5
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.1e-13 80.9 74 45.9
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.0e-12 78.6 58 67.2
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.4e-12 78.2 41 87.8
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 2.2e-10 70.9 166 26.5
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.1e-09 68.6 158 31.0
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 7.0e-09 65.9 61 47.5
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-06 58.5 43 65.1


User provided reference genes

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