Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036273 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004908 1.4e-81 306.2 158 100.0
Rhsim01G0244900 Rhododendron simsii HOM05D000068 ORTHO05D004908 6.4e-29 131.3 175 50.9
vmacro14655 Vaccinium macrocarpon HOM05D000068 ORTHO05D004908 2.4e-28 129.4 175 50.3
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 3.2e-28 129.0 179 49.2
Actinidia34509 Actinidia chinensis HOM05D000068 ORTHO05D004908 5.4e-28 128.3 168 52.4
Actinidia23828 Actinidia chinensis HOM05D000068 ORTHO05D004908 9.5e-25 117.5 168 48.2
Lj2A1105G55 Lonicera japonica HOM05D000068 ORTHO05D004908 4.7e-24 115.2 163 49.7
TAR633G0152 Trochodendron aralioides HOM05D000068 ORTHO05D004908 6.2e-24 114.8 178 48.9
CANSAT54G1816 Cannabis sativa HOM05D000068 ORTHO05D004908 4.9e-21 105.1 187 43.9
Sc21g0004810 Simmondsia chinensis HOM05D000068 ORTHO05D004908 4.9e-21 105.1 177 45.8
PGR102G3090 Punica granatum HOM05D000068 ORTHO05D004908 1.4e-20 103.6 177 46.3
Potri.013G160500 Populus trichocarpa HOM05D000068 ORTHO05D004908 2.4e-20 102.8 168 47.6
Lsat_1_v5_gn_5_176940 Lactuca sativa HOM05D000068 ORTHO05D004908 3.2e-20 102.4 168 42.9
MSTRG.21272 Avicennia marina HOM05D000068 ORTHO05D004908 7.0e-20 101.3 166 43.4
Nitab4.5_0000195g0110 Nicotiana tabacum HOM05D000068 ORTHO05D004908 7.0e-20 101.3 173 43.9
Nitab4.5_0001025g0040 Nicotiana tabacum HOM05D000068 ORTHO05D004908 7.0e-20 101.3 173 43.9
SalBow6G1344 Salvia bowleyana HOM05D000068 ORTHO05D004908 7.0e-20 101.3 177 42.9
Oeu034744.1 Olea europaea HOM05D000068 ORTHO05D004908 2.0e-19 99.8 165 44.8
Oeu034745.1 Olea europaea HOM05D000068 ORTHO05D004908 2.0e-19 99.8 165 44.8
arahy.Tifrunner.gnm1.ann1.953C08 Arachis hypogaea HOM05D000068 ORTHO05D004908 3.5e-19 99.0 181 42.5
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 7.8e-19 97.8 181 43.6
Migut.D00800 Erythranthe guttata HOM05D000068 ORTHO05D004908 1.0e-18 97.4 174 44.3
Sabra13G0128400 Salix brachista HOM05D000068 ORTHO05D004908 1.0e-18 97.4 168 45.2
ClCG02G018950 Citrullus lanatus HOM05D000068 ORTHO05D004908 1.7e-18 96.7 179 45.3
Sed0017529 Sechium edule HOM05D000068 ORTHO05D004908 3.0e-18 95.9 179 45.3
Sed0027288 Sechium edule HOM05D000068 ORTHO05D004908 3.0e-18 95.9 183 45.4
Cc01_g15510 Coffea canephora HOM05D000068 ORTHO05D004908 3.9e-18 95.5 179 42.5
ECA248G2583 Erigeron canadensis HOM05D000068 ORTHO05D004908 3.9e-18 95.5 164 42.7
MELO3C019594.2 Cucumis melo HOM05D000068 ORTHO05D004908 5.0e-18 95.1 179 43.6
HanXRQChr11g0338251 Helianthus annuus HOM05D000068 ORTHO05D004908 1.1e-17 94.0 169 42.6
HanXRQChr11g0342501 Helianthus annuus HOM05D000068 ORTHO05D004908 1.1e-17 94.0 169 42.6
Lalb_Chr04g0251601 Lupinus albus HOM05D000068 ORTHO05D004908 1.5e-17 93.6 177 42.9
Potri.019G132800 Populus trichocarpa HOM05D000068 ORTHO05D004908 1.9e-17 93.2 166 44.6
Haze_24493 Corylus avellana HOM05D000068 ORTHO05D004908 2.5e-17 92.8 174 43.7
Nn7g37145 Nelumbo nucifera HOM05D000068 ORTHO05D004908 2.5e-17 92.8 172 40.1
ECA247G3429 Erigeron canadensis HOM05D000068 ORTHO05D004908 3.3e-17 92.4 166 43.4
Manes.10G082900 Manihot esculenta HOM05D000068 ORTHO05D004908 4.3e-17 92.0 175 44.0
MD11G1049800 Malus domestica HOM05D000068 ORTHO05D004908 5.6e-17 91.7 174 43.7
Sabra19G0129100 Salix brachista HOM05D000068 ORTHO05D004908 7.3e-17 91.3 169 43.8
TWI31G0374 Tripterygium wilfordii HOM05D000068 ORTHO05D004908 7.3e-17 91.3 97 58.8
CiPaw.14G048500 Carya illinoinensis HOM05D000068 ORTHO05D004908 9.5e-17 90.9 166 45.2
Lalb_Chr17g0345721 Lupinus albus HOM05D000068 ORTHO05D004908 1.2e-16 90.5 177 42.9
CiPaw.13G060000 Carya illinoinensis HOM05D000068 ORTHO05D004908 1.6e-16 90.1 170 43.5
HanXRQChr08g0231151 Helianthus annuus HOM05D000068 ORTHO05D004908 1.6e-16 90.1 166 41.6
MD03G1047300 Malus domestica HOM05D000068 ORTHO05D004908 1.6e-16 90.1 97 58.8
Aqoxy2G00707 Aquilegia oxysepala HOM05D000068 ORTHO05D004908 2.1e-16 89.7 176 39.2
Prupe.6G038500 Prunus persica HOM05D000068 ORTHO05D004908 2.1e-16 89.7 97 58.8
Peaxi162Scf00766g00210 Petunia axillaris HOM05D000068 ORTHO05D004908 2.8e-16 89.4 172 39.5
CsaV3_6G013240 Cucumis sativus L. HOM05D000068 ORTHO05D004908 3.6e-16 89.0 179 42.5
Solyc09g055350.3 Solanum lycopersicum HOM05D000068 ORTHO05D004908 3.6e-16 89.0 97 56.7
Eucgr.B04035 Eucalyptus grandis HOM05D000068 ORTHO05D004908 8.1e-16 87.8 171 42.1
FAN11G2110 Fragaria x ananassa HOM05D000068 ORTHO05D004908 8.1e-16 87.8 97 56.7
FAN21G0421 Fragaria x ananassa HOM05D000068 ORTHO05D004908 8.1e-16 87.8 97 56.7
Lsat_1_v5_gn_9_15441 Lactuca sativa HOM05D000068 ORTHO05D004908 8.1e-16 87.8 166 39.8
RcHm_v2.0_Chr5g0073901 Rosa chinensis HOM05D000068 ORTHO05D004908 8.1e-16 87.8 97 56.7
Sopen09g017780 Solanum pennellii HOM05D000068 ORTHO05D004908 1.1e-15 87.4 171 40.9
PSO339G5917 Papaver somniferum HOM05D000068 ORTHO05D004908 1.4e-15 87.0 177 40.7
PSO384G2518 Papaver somniferum HOM05D000068 ORTHO05D004908 1.4e-15 87.0 177 40.7
EL10Ac8g19280 Beta vulgaris HOM05D000068 ORTHO05D004908 2.3e-15 86.3 165 43.0
AUR62031258 Chenopodium quinoa HOM05D000068 ORTHO05D004908 2.3e-15 86.3 170 42.9
DCAR_018588 Daucus carota HOM05D000068 ORTHO05D004908 2.3e-15 86.3 185 37.8
FAN25G2097 Fragaria x ananassa HOM05D000068 ORTHO05D004908 2.3e-15 86.3 97 55.7
FvH4_3g41120 Fragaria vesca HOM05D000068 ORTHO05D004908 3.1e-15 85.9 97 55.7
Atru.chr10.2353 Acer truncatum HOM05D000068 ORTHO05D004908 4.0e-15 85.5 98 59.2
FAN16G0787 Fragaria x ananassa HOM05D000068 ORTHO05D004908 4.0e-15 85.5 97 55.7
DCAR_012718 Daucus carota HOM05D000068 ORTHO05D004908 6.8e-15 84.7 97 53.6
AUR62027443 Chenopodium quinoa HOM05D000068 ORTHO05D004908 8.9e-15 84.3 170 42.9
Oeu023896.3 Olea europaea HOM05D000068 ORTHO05D004908 8.9e-15 84.3 88 58.0
TPR.G15393 Trifolium pratense HOM05D000068 ORTHO05D004908 8.9e-15 84.3 178 43.3
SGA_v2.0_scaffold20G09281 Striga asiatica HOM05D000068 ORTHO05D004908 1.5e-14 83.6 162 41.4
SGA_v2.0_scaffold54G19451 Striga asiatica HOM05D000068 ORTHO05D004908 2.0e-14 83.2 166 39.8
QL01p023679 Quercus lobata HOM05D000068 ORTHO05D004908 2.6e-14 82.8 178 40.4
GSVIVG01024527001 Vitis vinifera HOM05D000068 ORTHO05D004908 2.6e-14 82.8 170 40.6
PSO675G8940 Papaver somniferum HOM05D000068 ORTHO05D004908 4.4e-14 82.0 177 37.9
BcaB01g04541 Brassica carinata HOM05D000068 ORTHO05D004908 1.7e-13 80.1 178 38.2
Manes.02G209032 Manihot esculenta HOM05D000068 ORTHO05D004908 2.9e-13 79.3 175 41.7
BcaC04g19897 Brassica carinata HOM05D000068 ORTHO05D004908 4.9e-13 78.6 178 37.6
Cfa011859 Carpinus fangiana HOM05D000068 ORTHO05D004908 4.9e-13 78.6 174 39.7
Thhalv10012795m.g Eutrema salsugineum HOM05D000068 ORTHO05D004908 4.9e-13 78.6 179 36.9
Psat2g050120 Pisum sativum HOM05D000068 ORTHO05D004908 6.4e-13 78.2 184 39.7
A10p15950 Brassica napus HOM05D000068 ORTHO05D004908 8.3e-13 77.8 178 37.6
Aa31LG11G60 Aethionema arabicum HOM05D000068 ORTHO05D004908 1.1e-12 77.4 179 38.0
PSO541G0861 Papaver somniferum HOM05D000068 ORTHO05D004908 1.1e-12 77.4 199 34.7
C09p50100 Brassica napus HOM05D000068 ORTHO05D004908 3.2e-12 75.9 178 36.0
BolC9t57863H Brassica oleracea HOM05D000068 ORTHO05D004908 3.2e-12 75.9 178 36.0
Aa31LG10G11520 Aethionema arabicum HOM05D000068 ORTHO05D004908 4.1e-12 75.5 179 37.4
BraA10t43629Z Brassica rapa HOM05D000068 ORTHO05D004908 4.1e-12 75.5 178 37.1
A03p12330 Brassica napus HOM05D000068 ORTHO05D004908 5.4e-12 75.1 97 48.5
BraA03t10545Z Brassica rapa HOM05D000068 ORTHO05D004908 5.4e-12 75.1 97 48.5
LjContig00141g0025258 Lotus japonicus HOM05D000068 ORTHO05D004908 5.4e-12 75.1 182 35.7
unitig_62.g23946 Utricularia gibba HOM05D000068 ORTHO05D004908 5.4e-12 75.1 165 38.2
AL8G34370 Arabidopsis lyrata HOM05D000068 ORTHO05D004908 7.1e-12 74.7 97 49.5
AT5G58270 Arabidopsis thaliana HOM05D000068 ORTHO05D004908 7.1e-12 74.7 97 49.5
Sp6g19930 Schrenkiella parvula HOM05D000068 ORTHO05D004908 7.1e-12 74.7 178 36.5
BcaB01g04484 Brassica carinata HOM05D000068 ORTHO05D004908 2.7e-11 72.8 97 47.4
Cpa.g.sc2.263 Carica papaya HOM05D000068 ORTHO05D004908 3.5e-11 72.4 88 51.1
Ciclev10000439m.g Citrus clementina HOM05D000068 ORTHO05D004908 3.5e-11 72.4 88 55.7
Carub.0008s1881 Capsella rubella HOM05D000068 ORTHO05D004908 6.0e-11 71.6 97 47.4
TPR.G15395 Trifolium pratense HOM05D000068 ORTHO05D004908 6.0e-11 71.6 98 50.0
BcaB01g04535 Brassica carinata HOM05D000068 ORTHO05D004908 7.8e-11 71.2 171 38.0
C03p14480 Brassica napus HOM05D000068 ORTHO05D004908 7.8e-11 71.2 171 38.0
BolC3t13890H Brassica oleracea HOM05D000068 ORTHO05D004908 7.8e-11 71.2 171 38.0
HPP92_001440 Vanilla planifolia HOM05D000068 ORTHO05D004908 1.7e-10 70.1 170 37.6
Ca_05731_v3 Cicer arietinum L. HOM05D000068 ORTHO05D004908 2.3e-10 69.7 177 37.3
THA.LOC104819154 Tarenaya hassleriana HOM05D000068 ORTHO05D004908 2.3e-10 69.7 97 49.5
HPP92_001430 Vanilla planifolia HOM05D000068 ORTHO05D004908 2.3e-10 69.7 170 36.5
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 2.3e-10 69.7 174 39.1
COL.COLO4_11230 Corchorus olitorius HOM05D000068 ORTHO05D004908 3.0e-10 69.3 173 39.3
Zm00001eb015840 Zea mays HOM05D000068 ORTHO05D004908 3.0e-10 69.3 88 48.9
Os06g0128300 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D004908 5.1e-10 68.6 157 37.6
Medtr5g075955 Medicago truncatula HOM05D000068 ORTHO05D004908 8.6e-10 67.8 174 36.8
Duzib168G2364 Durio zibethinus HOM05D000068 ORTHO05D004908 1.1e-09 67.4 97 51.5
Phvul.008G243800 Phaseolus vulgaris HOM05D000068 ORTHO05D004908 1.1e-09 67.4 176 38.1
Ah.14g086040 Amaranthus hybridus HOM05D000068 ORTHO05D004908 1.5e-09 67.0 150 38.0
Thecc.09G365900 Theobroma cacao HOM05D000068 ORTHO05D004908 1.5e-09 67.0 92 52.2
ATR1127G155 Amborella trichopoda HOM05D000068 ORTHO05D004908 1.9e-09 66.6 174 36.8
CDE12G0761 Ceratophyllum demersum HOM05D000068 ORTHO05D004908 3.3e-09 65.9 155 34.8
Glyma.02G238300 Glycine max HOM05D000068 ORTHO05D004908 3.3e-09 65.9 97 50.5
Medtr5g075960 Medicago truncatula HOM05D000068 ORTHO05D004908 4.3e-09 65.5 97 47.4
Gorai.003G153100 Gossypium raimondii HOM05D000068 ORTHO05D004908 2.8e-08 62.8 174 36.8
Gohir.A03G022800 Gossypium hirsutum HOM05D000068 ORTHO05D004908 1.1e-07 60.8 97 49.5
Gohir.D03G145900 Gossypium hirsutum HOM05D000068 ORTHO05D004908 1.4e-07 60.5 174 36.8
Glyma.14G207200 Glycine max HOM05D000068 ORTHO05D004908 1.8e-07 60.1 171 36.8
BcaNung04291 Brassica carinata HOM05D000068 ORTHO05D004908 3.1e-07 59.3 97 44.3
C01p10890 Brassica napus HOM05D000068 ORTHO05D004908 3.1e-07 59.3 97 44.3
BolC1t01053H Brassica oleracea HOM05D000068 ORTHO05D004908 3.1e-07 59.3 97 44.3
A01p09310 Brassica napus HOM05D000068 ORTHO05D004908 4.0e-07 58.9 97 45.4
BraA01t00875Z Brassica rapa HOM05D000068 ORTHO05D004908 4.0e-07 58.9 97 45.4
AL7G23910 Arabidopsis lyrata HOM05D000068 ORTHO05D004908 5.2e-07 58.5 96 49.0
AT4G28620 Arabidopsis thaliana HOM05D000068 ORTHO05D004908 1.5e-06 57.0 97 42.3
SEGI_00370 Sequoiadendron giganteum HOM05D000068 ORTHO05D004908 1.5e-06 57.0 168 34.5
Sp7g26600 Schrenkiella parvula HOM05D000068 ORTHO05D004908 2.0e-06 56.6 97 45.4
Thhalv10027580m.g Eutrema salsugineum HOM05D000068 ORTHO05D004908 2.6e-06 56.2 97 45.4
AT4G28630 Arabidopsis thaliana HOM05D000068 ORTHO05D004908 4.4e-06 55.5 97 43.3
AL7G23920 Arabidopsis lyrata HOM05D000068 ORTHO05D004908 5.8e-06 55.1 97 41.2


User provided reference genes

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