Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.3e-165 586.3 292 100.0
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.7e-160 569.3 293 98.0
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 1.7e-144 516.2 294 87.1
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 1.1e-140 503.4 292 87.0
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 9.6e-140 500.4 294 85.0
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 1.3e-131 473.4 292 80.8
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 1.6e-131 473.0 286 81.1
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 2.1e-131 472.6 287 81.5
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 3.7e-131 471.9 286 80.8
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 8.2e-131 470.7 310 77.4
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 4.1e-130 468.4 287 80.8
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 5.3e-130 468.0 286 80.1
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 9.0e-130 467.2 273 84.6
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 3.4e-129 465.3 287 80.1
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 3.4e-129 465.3 301 78.4
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 2.2e-128 462.6 292 79.8
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 8.4e-128 460.7 292 78.4
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 5.5e-127 458.0 285 79.6
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 3.6e-126 455.3 277 83.0
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 4.6e-126 454.9 312 73.4
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.0e-125 452.2 290 78.6
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 9.7e-124 447.2 288 78.8
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 1.3e-123 446.8 274 79.9
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 2.8e-123 445.7 302 76.2
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 4.8e-123 444.9 301 74.4
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 4.8e-123 444.9 301 74.1
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 1.4e-122 443.4 301 76.4
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 6.9e-122 441.0 301 75.1
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 1.2e-121 440.3 302 76.2
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 2.0e-121 439.5 300 75.3
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 2.6e-121 439.1 301 75.1
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 3.4e-121 438.7 300 74.0
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 1.3e-120 436.8 301 73.8
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 2.2e-120 436.0 301 73.1
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 2.9e-120 435.6 295 75.9
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 8.5e-120 434.1 298 73.8
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 1.4e-119 433.3 300 73.7
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 3.2e-119 432.2 301 74.8
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 5.5e-119 431.4 300 74.3
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 7.2e-119 431.0 303 73.9
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 9.4e-119 430.6 294 75.5
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 4.6e-118 428.3 301 73.1
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 4.6e-118 428.3 300 73.7
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 6.1e-118 427.9 303 73.9
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 7.9e-118 427.6 303 71.9
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 7.9e-118 427.6 304 72.4
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 6.7e-117 424.5 302 73.8
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 8.8e-117 424.1 304 72.4
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 4.3e-116 421.8 305 71.5
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 9.7e-116 420.6 305 71.1
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 2.8e-115 419.1 301 71.8
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 1.1e-114 417.2 306 70.3
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 6.9e-114 414.5 301 70.1
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 1.2e-113 413.7 301 70.1
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 1.2e-113 413.7 304 70.4
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 1.5e-113 413.3 304 70.7
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 3.4e-113 412.1 304 70.7
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 1.3e-112 410.2 304 70.7
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 1.3e-112 410.2 304 70.1
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 2.9e-112 409.1 306 69.9
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 5.0e-112 408.3 308 68.8
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 6.5e-112 407.9 276 75.0
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 9.4e-111 404.1 335 64.8
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.1e-110 402.9 319 67.4
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 2.1e-110 402.9 296 69.3
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 3.9e-109 398.7 302 68.2
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 6.7e-109 397.9 298 69.1
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 8.8e-109 397.5 299 69.6
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 1.5e-108 396.7 313 67.4
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 2.0e-108 396.4 297 70.0
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.6e-108 396.0 319 66.5
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 2.2e-107 392.9 297 66.0
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.4e-106 389.4 269 73.2
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 5.3e-106 388.3 289 69.2
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 7.0e-106 387.9 295 67.1
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 2.6e-105 386.0 300 66.7
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 7.7e-105 384.4 234 81.6
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 1.3e-104 383.6 257 73.9
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 1.7e-104 383.3 303 64.0
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 2.5e-103 379.4 297 65.7
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 4.2e-103 378.6 295 65.8
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 5.5e-103 378.3 297 65.7
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 2.3e-101 372.9 290 62.8
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 1.5e-100 370.2 300 66.7
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 4.4e-100 368.6 303 65.3
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 8.2e-99 364.4 277 66.4
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 8.2e-99 364.4 237 78.1
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 7.7e-97 357.8 248 73.0
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 5.0e-96 355.1 297 61.6
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 6.5e-96 354.8 247 72.5
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 4.2e-95 352.1 251 70.5
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 6.8e-93 344.7 244 72.5
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 3.1e-90 335.9 206 79.1
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 2.0e-89 333.2 327 58.4
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 1.3e-88 330.5 301 57.1
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 6.5e-88 328.2 204 78.9
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 3.2e-87 325.9 230 74.8
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 1.4e-85 320.5 300 53.0
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 7.5e-84 314.7 208 78.4
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 2.2e-83 313.2 228 70.2
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 5.6e-79 298.5 212 73.1
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.3e-75 287.3 251 61.0
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 2.9e-75 286.2 219 70.3
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 1.6e-73 280.4 149 87.2
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 4.6e-73 278.9 222 64.9
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 3.3e-71 272.7 229 66.8
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 6.2e-70 268.5 438 42.5
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 1.2e-68 264.2 252 57.5
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 5.8e-68 261.9 290 52.8
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 4.1e-66 255.8 313 45.0
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.3e-56 224.2 184 63.0
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 1.1e-53 214.5 181 64.6
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 6.0e-49 198.7 178 60.1
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.3e-48 197.6 134 72.4
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 7.3e-47 191.8 123 72.4
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 3.6e-46 189.5 111 76.6
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 1.8e-45 187.2 95 93.7
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.2e-44 184.5 204 55.9
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 1.1e-42 177.9 164 59.1
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 1.0e-40 171.4 117 77.8
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.5e-39 167.5 96 81.2
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 6.9e-37 158.7 287 35.9
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 2.4e-34 150.2 85 81.2
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.1e-30 137.1 143 50.3
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 3.7e-30 136.3 256 35.5
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 3.8e-27 126.3 335 31.0
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 2.4e-26 123.6 138 46.4
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 2.7e-25 120.2 158 45.6
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 1.3e-24 117.9 70 80.0
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 4.3e-23 112.8 98 62.2
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 5.3e-21 105.9 82 70.7
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.9e-18 97.4 79 67.1
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 5.3e-13 79.3 92 48.9
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.9e-10 70.9 93 47.3
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 2.5e-10 70.5 31 87.1
SalBow3G3353 Salvia bowleyana HOM05D005614 ORTHO05D006759 1.8e-08 64.3 65 53.8


User provided reference genes

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