Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.2e-56 221.9 143 100.0
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 7.3e-24 114.4 84 98.8
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 7.8e-18 94.4 82 84.1
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 3.9e-17 92.0 84 81.0
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 5.0e-17 91.7 97 77.3
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 8.6e-17 90.9 78 87.2
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 8.6e-17 90.9 84 82.1
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 8.6e-17 90.9 83 84.3
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.5e-16 89.4 82 86.6
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 4.3e-16 88.6 84 82.1
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 5.6e-16 88.2 77 88.3
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 5.6e-16 88.2 78 87.2
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 5.6e-16 88.2 78 87.2
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.6e-15 86.7 84 81.0
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.1e-15 86.3 87 78.2
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 2.1e-15 86.3 76 88.2
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 2.1e-15 86.3 78 84.6
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 2.8e-15 85.9 78 83.3
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 1.1e-14 84.0 83 77.1
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.1e-14 84.0 81 81.5
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.1e-14 84.0 81 81.5
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 1.1e-14 84.0 81 81.5
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.4e-14 83.6 84 78.6
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.4e-14 83.6 83 68.7
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.4e-14 83.6 78 83.3
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 1.4e-14 83.6 84 77.4
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 1.8e-14 83.2 108 54.6
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.8e-14 83.2 78 80.8
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 2.3e-14 82.8 83 79.5
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 2.3e-14 82.8 83 79.5
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 4.0e-14 82.0 79 79.7
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 4.0e-14 82.0 82 75.6
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 5.2e-14 81.6 78 79.5
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 5.2e-14 81.6 78 80.8
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 5.2e-14 81.6 83 74.7
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 5.2e-14 81.6 86 76.7
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 5.2e-14 81.6 77 84.4
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 6.8e-14 81.3 128 55.5
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 6.8e-14 81.3 85 81.2
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 6.8e-14 81.3 82 80.5
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 6.8e-14 81.3 81 76.5
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 6.8e-14 81.3 83 78.3
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 8.9e-14 80.9 85 78.8
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 8.9e-14 80.9 78 79.5
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.2e-13 80.5 128 54.7
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.2e-13 80.5 82 80.5
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.5e-13 80.1 78 83.3
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.0e-13 79.7 85 72.9
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.0e-13 79.7 85 77.6
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.6e-13 79.3 77 61.0
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.6e-13 79.3 83 74.7
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 2.6e-13 79.3 83 74.7
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 3.4e-13 79.0 82 76.8
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 3.4e-13 79.0 78 80.8
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 4.4e-13 78.6 79 82.3
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 5.8e-13 78.2 87 77.0
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 5.8e-13 78.2 87 77.0
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 5.8e-13 78.2 85 77.6
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 5.8e-13 78.2 85 72.9
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 5.8e-13 78.2 82 79.3
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 9.9e-13 77.4 85 80.0
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.7e-12 76.6 127 55.9
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.7e-12 76.6 78 80.8
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 2.2e-12 76.3 78 79.5
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.9e-12 75.9 128 56.2
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 4.9e-12 75.1 83 75.9
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 6.4e-12 74.7 82 78.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 8.3e-12 74.3 81 76.5
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 8.3e-12 74.3 78 62.8
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 8.3e-12 74.3 128 55.5
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 8.3e-12 74.3 127 56.7
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 1.1e-11 73.9 77 76.6
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.1e-11 73.9 77 79.2
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 1.1e-11 73.9 85 71.8
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.1e-11 73.9 82 76.8
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.4e-11 73.6 79 77.2
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.4e-11 73.6 83 66.3
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.9e-11 73.2 84 71.4
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.9e-11 73.2 80 67.5
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 5.4e-11 71.6 83 66.3
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.4e-11 71.6 78 76.9
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.4e-11 71.6 78 76.9
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 7.1e-11 71.2 84 76.2
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 7.1e-11 71.2 84 76.2
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 7.1e-11 71.2 77 77.9
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 9.2e-11 70.9 76 78.9
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 9.2e-11 70.9 76 78.9
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 9.2e-11 70.9 78 73.1
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 9.2e-11 70.9 77 75.3
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.2e-10 70.5 87 71.3
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.2e-10 70.5 75 77.3
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.2e-10 70.5 75 77.3
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.2e-10 70.5 75 77.3
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.2e-10 70.5 75 77.3
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.6e-10 70.1 90 71.1
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.6e-10 70.1 127 53.5
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.1e-10 69.7 89 61.8
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 2.1e-10 69.7 78 73.1
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 2.1e-10 69.7 83 72.3
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.7e-10 69.3 84 72.6
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 2.7e-10 69.3 79 75.9
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 2.7e-10 69.3 84 72.6
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 3.5e-10 68.9 87 70.1
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 3.5e-10 68.9 87 71.3
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.5e-10 68.9 87 63.2
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 4.6e-10 68.6 78 76.9
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 4.6e-10 68.6 81 74.1
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 6.0e-10 68.2 75 78.7
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 6.0e-10 68.2 87 65.5
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 7.8e-10 67.8 73 80.8
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.1e-08 63.9 80 72.5
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.5e-08 63.5 33 97.0
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 2.5e-08 62.8 78 69.2
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 2.5e-08 62.8 72 77.8
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 3.3e-08 62.4 33 93.9
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.3e-08 61.2 72 76.4
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 9.5e-08 60.8 33 90.9
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.5e-08 60.8 32 96.9
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.2e-07 60.5 33 90.9
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.6e-07 60.1 70 80.0
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 2.8e-07 59.3 33 87.9
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 4.7e-07 58.5 33 84.8


User provided reference genes

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