Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 8.6e-165 583.6 291 100.0
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 7.6e-153 543.9 291 92.1
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.4e-151 539.7 291 89.3
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 3.2e-151 538.5 291 90.0
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 7.1e-151 537.3 296 89.9
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 9.2e-151 537.0 291 90.4
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 1.6e-150 536.2 291 89.3
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 2.1e-150 535.8 290 89.0
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 3.5e-150 535.0 291 89.0
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 3.5e-150 535.0 291 89.0
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 6.0e-150 534.3 291 89.0
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 6.0e-150 534.3 291 89.3
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.0e-149 533.5 319 85.3
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 1.7e-149 532.7 291 89.0
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 2.3e-149 532.3 291 89.3
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.3e-149 532.3 290 90.3
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 3.9e-149 531.6 291 89.0
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 5.1e-149 531.2 288 89.2
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 6.6e-149 530.8 288 88.9
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 6.6e-149 530.8 288 88.5
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 6.6e-149 530.8 291 88.3
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 8.7e-149 530.4 288 88.5
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 8.7e-149 530.4 291 88.0
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 8.7e-149 530.4 291 87.6
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.9e-148 529.3 288 87.8
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.9e-148 529.3 288 87.8
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 2.5e-148 528.9 291 89.0
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 3.3e-148 528.5 288 88.2
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 3.3e-148 528.5 288 88.9
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 3.3e-148 528.5 288 88.5
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 4.3e-148 528.1 291 88.3
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 4.3e-148 528.1 291 87.6
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 4.3e-148 528.1 288 88.9
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.6e-148 527.7 291 88.0
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 5.6e-148 527.7 291 87.3
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 5.6e-148 527.7 288 87.8
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 7.3e-148 527.3 291 89.3
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 88.3
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 88.7
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 9.6e-148 526.9 288 88.5
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 9.6e-148 526.9 288 88.2
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 1.2e-147 526.6 288 88.2
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 1.2e-147 526.6 288 88.2
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 1.2e-147 526.6 291 86.9
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.2e-147 526.6 288 88.5
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.6e-147 526.2 291 87.3
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.6e-147 526.2 291 88.3
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 2.1e-147 525.8 291 87.6
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 2.1e-147 525.8 288 89.2
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 2.1e-147 525.8 288 88.9
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.8e-147 525.4 291 87.3
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 2.8e-147 525.4 288 86.8
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 2.8e-147 525.4 288 88.9
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 2.8e-147 525.4 291 88.0
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 4.7e-147 524.6 289 89.6
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 4.7e-147 524.6 288 89.2
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 4.7e-147 524.6 288 87.2
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 4.7e-147 524.6 286 88.1
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 4.7e-147 524.6 291 86.6
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 6.2e-147 524.2 291 88.0
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 6.2e-147 524.2 291 87.6
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 6.2e-147 524.2 291 88.0
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 6.2e-147 524.2 286 88.5
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 6.2e-147 524.2 288 87.5
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 6.2e-147 524.2 288 88.2
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 8.1e-147 523.9 288 88.2
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.1e-146 523.5 291 87.3
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.1e-146 523.5 291 87.3
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 1.1e-146 523.5 288 88.2
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 1.4e-146 523.1 285 88.1
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 1.8e-146 522.7 289 86.5
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.8e-146 522.7 285 89.1
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 1.8e-146 522.7 289 87.9
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 3.1e-146 521.9 287 86.8
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 6.9e-146 520.8 259 100.0
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 9.0e-146 520.4 288 87.8
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 2.6e-145 518.8 275 91.6
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 5.8e-145 517.7 291 86.9
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 9.9e-145 516.9 288 85.8
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.3e-144 516.5 286 87.1
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 1.3e-144 516.5 288 87.8
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-144 516.2 295 84.1
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 1.7e-144 516.2 292 87.7
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 2.2e-144 515.8 291 85.6
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 3.8e-144 515.0 290 86.9
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 4.9e-144 514.6 273 92.3
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 1.1e-143 513.5 292 87.0
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 1.9e-143 512.7 295 86.4
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 2.4e-143 512.3 290 85.9
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.4e-143 512.3 363 74.9
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 3.2e-143 511.9 287 85.7
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 5.4e-143 511.1 309 81.2
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 1.6e-142 509.6 290 87.6
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 2.3e-141 505.8 296 85.8
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 2.3e-141 505.8 291 86.3
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 3.0e-141 505.4 288 84.7
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 5.1e-141 504.6 291 85.9
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 6.6e-141 504.2 291 85.6
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 7.3e-140 500.7 288 84.7
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 1.6e-139 499.6 272 87.9
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 2.8e-139 498.8 286 86.0
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 4.8e-139 498.0 273 87.2
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 4.8e-139 498.0 279 89.2
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.1e-139 497.3 272 88.2
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 2.4e-138 495.7 286 85.0
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 3.1e-138 495.4 272 87.9
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.1e-138 495.4 312 82.1
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 5.3e-138 494.6 272 89.0
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 6.9e-138 494.2 290 84.5
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 9.0e-138 493.8 270 88.1
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.5e-137 493.0 301 83.1
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 2.6e-137 492.3 276 87.0
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.6e-137 492.3 272 87.5
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 1.3e-136 490.0 282 84.8
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 8.4e-136 487.3 295 83.4
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 8.4e-136 487.3 295 83.4
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.4e-135 485.7 293 84.0
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 1.0e-133 480.3 268 89.2
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 8.7e-133 477.2 272 88.2
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 1.9e-132 476.1 272 87.1
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 9.6e-132 473.8 284 82.7
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 6.2e-131 471.1 291 80.1
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 1.8e-130 469.5 258 89.5
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.0e-129 466.1 291 79.7
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 7.6e-129 464.2 256 87.9
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.2e-128 462.6 256 87.5
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 3.2e-127 458.8 280 77.9
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 2.1e-126 456.1 271 80.8
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 2.7e-126 455.7 315 75.9
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 3.5e-126 455.3 330 71.5
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.8e-125 453.0 242 92.6
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 4.3e-124 448.4 245 88.6
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 1.6e-123 446.4 290 73.1
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 3.7e-123 445.3 238 90.8
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.1e-122 443.7 254 85.0
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 4.9e-120 434.9 288 77.1
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 7.1e-119 431.0 394 62.2
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 1.1e-111 407.1 287 68.6
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 5.5e-111 404.8 275 75.3
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.3e-107 393.7 218 86.2
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 4.1e-98 362.1 198 87.9
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 5.0e-96 355.1 400 52.0
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-95 354.0 275 67.6
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 1.9e-95 353.2 191 86.9
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 1.8e-90 336.7 190 84.7
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 5.9e-89 331.6 271 65.3
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 2.2e-83 313.2 278 60.8
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 2.6e-76 289.7 246 64.6
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-74 283.5 172 77.3
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.0e-68 263.5 194 71.6
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 5.7e-68 261.9 261 48.7
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 9.8e-52 208.0 193 60.1
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 1.9e-50 203.8 133 75.9
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 1.9e-50 203.8 133 75.9
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 9.9e-36 154.8 141 59.6
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.1e-31 141.4 129 62.8
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 2.3e-24 117.1 91 63.7
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 3.6e-22 109.8 66 77.3
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 3.1e-21 106.7 64 81.2
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 5.3e-21 105.9 72 63.9
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 9.9e-20 101.7 88 61.4
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 9.9e-20 101.7 88 61.4
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.3e-14 84.7 48 79.2
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 8.1e-14 82.0 46 84.8
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.5e-12 77.8 90 54.4
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.5e-12 77.8 90 54.4
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 1.0e-11 75.1 45 75.6
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 1.6e-09 67.8 45 66.7
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.3e-08 64.7 37 86.5
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 1.6e-06 57.8 34 85.3


User provided reference genes

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