Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 4.4e-36 154.1 76 100.0
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.7e-33 144.8 76 93.4
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 2.3e-29 131.7 69 91.3
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 2.1e-17 92.0 45 95.6
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 3.5e-17 91.3 55 78.2
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 6.0e-17 90.5 50 84.0
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 3.9e-16 87.8 50 80.0
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 3.9e-16 87.8 50 80.0
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 3.9e-16 87.8 50 80.0
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 5.1e-16 87.4 50 78.0
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 6.6e-16 87.0 50 80.0
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 8.6e-16 86.7 50 80.0
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 8.6e-16 86.7 50 80.0
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 1.1e-15 86.3 50 78.0
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 1.5e-15 85.9 50 78.0
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 1.5e-15 85.9 55 72.7
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 1.9e-15 85.5 50 76.0
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.5e-15 85.1 50 76.0
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 2.5e-15 85.1 50 76.0
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 3.3e-15 84.7 50 76.0
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 3.3e-15 84.7 50 76.0
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 3.3e-15 84.7 45 84.4
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 3.3e-15 84.7 50 76.0
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 4.3e-15 84.3 44 84.1
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 4.3e-15 84.3 55 72.7
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 4.3e-15 84.3 49 77.6
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 5.6e-15 84.0 45 84.4
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 5.6e-15 84.0 50 76.0
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 5.6e-15 84.0 50 76.0
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 5.6e-15 84.0 50 76.0
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 5.6e-15 84.0 50 76.0
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 7.3e-15 83.6 50 74.0
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 7.3e-15 83.6 50 74.0
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 7.3e-15 83.6 50 76.0
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 7.3e-15 83.6 50 74.0
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 9.5e-15 83.2 50 78.0
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 9.5e-15 83.2 50 78.0
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.2e-14 82.8 55 72.7
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.2e-14 82.8 50 76.0
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.6e-14 82.4 55 70.9
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.6e-14 82.4 50 72.0
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 1.6e-14 82.4 55 69.1
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.6e-14 82.4 50 74.0
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.6e-14 82.4 50 78.0
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 2.1e-14 82.0 50 72.0
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 2.1e-14 82.0 49 73.5
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.1e-14 82.0 49 73.5
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.1e-14 82.0 49 73.5
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.1e-14 82.0 49 73.5
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 2.1e-14 82.0 49 73.5
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 2.1e-14 82.0 50 74.0
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 2.8e-14 81.6 50 74.0
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 2.8e-14 81.6 50 76.0
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.8e-14 81.6 50 74.0
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 3.6e-14 81.3 50 70.0
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 3.6e-14 81.3 50 74.0
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 3.6e-14 81.3 50 74.0
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 3.6e-14 81.3 45 80.0
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 3.6e-14 81.3 50 72.0
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 4.7e-14 80.9 50 74.0
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 4.7e-14 80.9 50 74.0
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 6.2e-14 80.5 49 73.5
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 6.2e-14 80.5 50 72.0
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 6.2e-14 80.5 50 72.0
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 6.2e-14 80.5 50 74.0
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 6.2e-14 80.5 49 75.5
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.1e-13 79.7 50 76.0
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 1.1e-13 79.7 49 73.5
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.1e-13 79.7 50 72.0
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 1.1e-13 79.7 50 72.0
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.4e-13 79.3 44 79.5
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 1.8e-13 79.0 45 77.8
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.8e-13 79.0 50 70.0
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.4e-13 78.6 45 80.0
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 3.1e-13 78.2 47 74.5
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.1e-13 78.2 50 74.0
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 4.0e-13 77.8 50 74.0
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 4.0e-13 77.8 45 75.6
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 5.2e-13 77.4 45 75.6
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 5.2e-13 77.4 50 70.0
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 6.8e-13 77.0 49 69.4
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 8.9e-13 76.6 49 71.4
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 8.9e-13 76.6 50 72.0
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 8.9e-13 76.6 49 71.4
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 8.9e-13 76.6 45 75.6
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 8.9e-13 76.6 45 75.6
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 8.9e-13 76.6 55 65.5
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 2.0e-12 75.5 50 72.0
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 2.0e-12 75.5 50 68.0
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 2.6e-12 75.1 45 73.3
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 2.6e-12 75.1 45 73.3
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 2.6e-12 75.1 44 72.7
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 5.8e-12 73.9 49 71.4
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 5.8e-12 73.9 50 66.0
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 9.9e-12 73.2 50 68.0
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 2.9e-11 71.6 50 66.0
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 3.8e-11 71.2 45 66.7
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.4e-10 69.3 50 62.0
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.4e-10 69.3 50 62.0
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.4e-10 69.3 50 68.0
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 1.9e-10 68.9 50 60.0
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 3.2e-10 68.2 50 62.0
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 3.2e-10 68.2 50 60.0
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 3.2e-10 68.2 50 60.0
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.1e-10 67.8 50 66.0
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 7.1e-10 67.0 50 60.0
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 7.1e-10 67.0 50 60.0
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 7.1e-10 67.0 50 60.0
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 7.1e-10 67.0 50 60.0
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 7.1e-10 67.0 50 60.0
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 7.1e-10 67.0 50 60.0
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 9.2e-10 66.6 50 60.0
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 2.1e-09 65.5 50 58.0
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 2.7e-09 65.1 50 66.0
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 3.5e-09 64.7 45 62.2
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 3.5e-09 64.7 45 62.2
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 3.5e-09 64.7 45 62.2
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 3.5e-09 64.7 45 62.2
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 3.5e-09 64.7 45 62.2
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 3.5e-09 64.7 45 62.2
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 1.0e-08 63.2 50 60.0
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.3e-08 62.0 50 56.0
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.3e-08 62.0 50 54.0
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 2.3e-08 62.0 50 54.0
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 3.9e-08 61.2 45 62.2
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 5.1e-08 60.8 50 54.0
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 2.5e-07 58.5 55 50.9
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.6e-06 55.8 45 53.3
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.6e-06 55.8 45 53.3
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 4.7e-06 54.3 35 57.1


User provided reference genes

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