Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 1.4e-59 232.6 107 100.0
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 3.1e-51 204.9 93 100.0
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 3.9e-30 134.8 104 64.4
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 7.6e-26 120.6 104 56.7
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 4.9e-25 117.9 105 55.2
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 1.8e-22 109.4 104 51.0
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 1.1e-21 106.7 104 50.0
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 2.5e-21 105.5 104 51.9
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 4.8e-20 101.3 104 47.1
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 4.8e-20 101.3 88 55.7
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 1.4e-19 99.8 79 60.8
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 4.5e-18 94.7 87 50.6
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 4.5e-18 94.7 98 53.1
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 4.5e-18 94.7 81 55.6
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 2.9e-17 92.0 87 49.4
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 2.9e-17 92.0 104 48.1
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 3.8e-17 91.7 107 43.0
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 6.4e-17 90.9 104 48.1
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 1.1e-16 90.1 80 53.8
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 1.9e-16 89.4 88 50.0
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 3.2e-16 88.6 87 47.1
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 4.2e-16 88.2 81 54.3
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 7.1e-16 87.4 87 47.1
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 9.3e-16 87.0 86 48.8
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 9.3e-16 87.0 86 48.8
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 1.2e-15 86.7 86 48.8
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 2.1e-15 85.9 86 48.8
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 3.0e-14 82.0 99 45.5
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 3.0e-14 82.0 104 46.2
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 3.0e-14 82.0 104 46.2
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 3.0e-14 82.0 70 55.7
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 5.1e-14 81.3 81 49.4
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 6.7e-14 80.9 88 45.5
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 8.7e-14 80.5 86 47.7
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 1.1e-13 80.1 70 54.3
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 1.5e-13 79.7 73 53.4
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 2.5e-13 79.0 83 53.0
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.5e-13 79.0 104 45.2
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 3.3e-13 78.6 102 43.1
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 3.3e-13 78.6 87 43.7
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 3.3e-13 78.6 89 46.1
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 4.3e-13 78.2 80 47.5
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 9.6e-13 77.0 88 45.5
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 1.6e-12 76.3 85 44.7
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 1.6e-12 76.3 103 42.7
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 2.1e-12 75.9 86 43.0
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.1e-12 75.9 104 44.2
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 4.8e-12 74.7 86 43.0
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 4.8e-12 74.7 106 42.5
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 1.1e-11 73.6 66 56.1
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 1.1e-11 73.6 109 39.4
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 4.0e-11 71.6 81 43.2
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 5.3e-11 71.2 85 42.4
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 6.9e-11 70.9 83 45.8
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 6.9e-11 70.9 70 51.4
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 6.9e-11 70.9 85 43.5
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 9.0e-11 70.5 79 46.8
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 1.2e-10 70.1 83 39.8
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 2.6e-10 68.9 86 40.7
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 4.5e-10 68.2 86 34.9
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 1.0e-09 67.0 86 37.2
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 1.0e-09 67.0 80 41.2
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 1.3e-09 66.6 87 34.5
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 1.7e-09 66.2 86 36.0
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 3.8e-09 65.1 86 36.0
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 6.5e-09 64.3 69 47.8
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 8.4e-09 63.9 86 34.9
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 2.5e-08 62.4 86 33.7
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 2.5e-08 62.4 86 33.7
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 3.2e-08 62.0 88 35.2
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 1.2e-07 60.1 70 40.0
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 1.2e-07 60.1 70 40.0
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 1.2e-07 60.1 70 40.0
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 3.5e-07 58.5 86 34.9
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 6.0e-07 57.8 89 32.6
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 1.3e-06 56.6 81 35.8


User provided reference genes

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