Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.7e-171 605.9 301 100.0
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 7.6e-156 553.9 312 90.4
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 1.0e-144 516.9 319 81.8
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 1.6e-142 509.6 312 83.0
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 3.4e-140 501.9 312 82.4
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 9.9e-140 500.4 312 81.4
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 1.1e-138 496.9 312 81.7
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 2.4e-138 495.7 312 80.8
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 7.9e-137 490.7 310 80.0
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 1.8e-136 489.6 313 78.6
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.5e-135 486.5 310 78.7
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 1.9e-135 486.1 311 79.1
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 2.5e-135 485.7 310 79.0
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 3.3e-135 485.3 310 79.0
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 1.1e-133 480.3 310 80.3
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.1e-133 480.3 311 78.1
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.4e-133 479.9 310 76.1
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 1.8e-133 479.6 311 78.1
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 2.4e-133 479.2 308 78.6
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 3.1e-133 478.8 309 79.0
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 4.0e-133 478.4 311 77.2
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 6.9e-133 477.6 310 77.7
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 2.6e-132 475.7 310 76.8
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 2.6e-132 475.7 312 77.6
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 3.4e-132 475.3 312 77.2
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.5e-132 474.9 312 78.5
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 3.2e-130 468.8 310 78.7
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 4.2e-130 468.4 310 76.8
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 7.1e-130 467.6 309 77.3
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 3.5e-129 465.3 311 76.5
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 1.0e-128 463.8 311 77.5
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 1.3e-128 463.4 310 75.8
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 3.9e-128 461.8 311 75.2
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 5.1e-128 461.5 311 75.9
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 2.5e-127 459.1 311 74.9
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 3.3e-127 458.8 310 73.9
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.3e-127 458.8 310 73.9
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.3e-127 458.8 310 73.9
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 3.3e-127 458.8 311 74.6
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 3.3e-127 458.8 312 76.0
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 5.6e-127 458.0 311 74.6
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.1e-126 456.1 310 73.5
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 2.1e-126 456.1 316 75.0
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 2.1e-126 456.1 310 74.2
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 2.8e-126 455.7 316 74.7
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 3.7e-126 455.3 311 75.6
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.8e-125 453.0 313 74.4
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.8e-125 453.0 313 74.4
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 1.8e-125 453.0 317 74.4
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 4.0e-125 451.8 310 74.8
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.6e-124 449.1 325 73.2
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 2.2e-123 446.0 297 75.8
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 2.9e-123 445.7 311 74.3
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 1.1e-122 443.7 311 71.4
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.9e-121 437.6 312 70.8
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.8e-120 436.4 310 70.3
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 2.3e-120 436.0 310 72.6
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 1.1e-119 433.7 312 71.8
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 1.3e-118 430.3 310 70.6
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 1.6e-118 429.9 311 70.1
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 1.6e-118 429.9 312 70.2
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 2.2e-118 429.5 310 69.7
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 2.8e-118 429.1 311 70.1
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 6.3e-118 427.9 312 70.8
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 6.3e-118 427.9 316 69.9
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 2.4e-117 426.0 311 70.1
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 2.4e-117 426.0 311 70.1
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 3.1e-117 425.6 286 76.6
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 4.1e-117 425.2 312 70.8
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 6.9e-117 424.5 314 71.0
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 5.9e-116 421.4 312 68.9
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 5.9e-116 421.4 312 69.9
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.3e-115 420.2 312 68.6
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 2.9e-115 419.1 312 68.9
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 3.8e-115 418.7 309 69.6
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 1.1e-114 417.2 310 68.7
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 1.9e-114 416.4 381 60.6
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.2e-113 413.7 310 69.0
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 3.6e-113 412.1 310 68.4
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 4.6e-113 411.8 310 69.0
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 1.0e-112 410.6 316 69.3
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 1.4e-112 410.2 310 68.4
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 2.3e-112 409.5 310 67.1
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 2.3e-112 409.5 310 67.1
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 3.0e-112 409.1 310 67.1
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 3.0e-112 409.1 310 67.1
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 5.1e-112 408.3 310 67.4
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 5.1e-112 408.3 310 65.8
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 6.7e-112 407.9 310 66.8
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 8.8e-112 407.5 312 66.7
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 1.1e-111 407.1 310 67.7
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 1.5e-111 406.8 318 65.1
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 1.9e-111 406.4 310 66.8
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 1.9e-111 406.4 325 67.1
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 2.2e-110 402.9 310 67.4
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 2.2e-110 402.9 310 65.2
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 2.8e-110 402.5 310 66.8
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 2.4e-109 399.4 336 62.5
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.1e-109 398.7 310 66.5
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 2.0e-108 396.4 301 66.8
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 3.4e-108 395.6 307 65.8
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 3.4e-108 395.6 318 64.5
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 4.5e-108 395.2 307 66.1
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 7.7e-108 394.4 317 64.0
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 1.3e-107 393.7 288 68.4
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 2.2e-107 392.9 293 70.3
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 1.9e-106 389.8 342 61.7
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 1.9e-106 389.8 307 65.5
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 3.6e-105 385.6 319 64.3
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.0e-104 384.0 307 65.8
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.8e-104 383.3 308 63.0
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 5.7e-103 378.3 313 63.6
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 9.1e-101 370.9 310 61.6
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 3.8e-99 365.5 308 63.0
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 2.5e-98 362.8 312 61.9
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 6.7e-96 354.8 313 59.1
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 1.7e-94 350.1 339 55.8
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 4.8e-94 348.6 314 61.8
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 1.2e-92 344.0 304 60.5
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 8.0e-89 331.3 312 59.3
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 7.5e-87 324.7 246 70.7
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 3.5e-84 315.8 247 66.0
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 4.5e-84 315.5 309 56.6
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.7e-81 306.2 309 55.0
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 2.3e-80 303.1 308 51.0
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 3.4e-71 272.7 247 58.3
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 4.1e-69 265.8 176 76.1
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 5.2e-64 248.8 194 66.5
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.1e-58 231.1 142 83.1
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 1.1e-58 231.1 306 42.8
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 4.3e-58 229.2 319 42.3
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 3.6e-57 226.1 411 35.8
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 3.1e-56 223.0 168 68.5
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.1e-53 214.5 166 66.3
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 9.2e-53 211.5 168 65.5
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-49 201.1 211 54.0
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 3.6e-49 199.5 152 69.1
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.3e-48 196.8 162 61.1
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 4.4e-47 192.6 170 57.6
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.4e-45 186.8 161 59.0
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.9e-38 162.5 139 60.4
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-37 161.0 139 60.4
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.4e-37 160.2 127 66.1
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-36 157.9 139 59.7
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 4.6e-36 156.0 245 40.4
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 4.3e-34 149.4 160 54.4
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.3e-34 149.4 175 49.7
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.2e-33 147.9 195 48.7
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.5e-31 141.0 87 80.5
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.9e-31 138.3 240 38.3
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 9.9e-31 138.3 87 78.2
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.3e-30 137.9 86 80.2
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-28 131.3 128 55.5
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.7e-27 125.2 244 36.1
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 6.2e-25 119.0 135 52.6
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.4e-24 117.9 341 32.0
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.7e-22 110.9 164 45.1
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.2e-21 106.3 62 82.3
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.6e-20 102.8 92 59.8
EL10Ac4g08784 Beta vulgaris HOM05D003501 ORTHO05D004388 7.9e-20 102.1 144 44.4
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.1e-19 99.4 100 50.0
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 6.7e-19 99.0 70 68.6
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.5e-18 97.8 91 54.9
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 5.6e-18 95.9 59 76.3
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.6e-17 94.4 92 53.3
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 3.7e-17 93.2 129 46.5
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 6.9e-16 89.0 58 74.1
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 4.5e-15 86.3 91 54.9
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.9e-14 82.8 92 51.1
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.9e-13 80.9 49 79.6
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.1e-13 79.0 83 48.2
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-12 78.2 83 47.0
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 1.6e-12 77.8 51 72.5
EL10Ac2g02713 Beta vulgaris HOM05D003501 ORTHO05D004388 1.8e-11 74.3 56 62.5
AL1G16300 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 1.1e-10 71.6 96 41.7
Actinidia23574 Actinidia chinensis HOM05D003501 ORTHO05D057363 7.4e-10 68.9 151 35.8


User provided reference genes

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