Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.2e-231 806.2 414 100.0
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 4.2e-213 744.6 445 86.3
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.2e-212 743.0 414 91.1
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 9.0e-208 726.9 414 88.4
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 3.4e-207 724.9 414 87.9
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.1e-205 719.9 412 88.1
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.4e-205 719.5 414 87.4
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.3e-203 713.0 414 87.9
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.5e-202 709.5 416 87.3
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.9e-202 709.1 414 86.2
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 7.3e-202 707.2 409 87.8
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 9.6e-202 706.8 410 87.3
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.3e-201 706.4 414 86.7
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.3e-201 706.4 409 88.0
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 3.6e-201 704.9 414 86.0
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 3.6e-201 704.9 414 86.0
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.8e-200 702.6 414 87.0
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 3.1e-200 701.8 414 86.2
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 5.3e-200 701.0 413 83.8
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.5e-199 699.5 414 85.7
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 4.5e-199 698.0 414 84.8
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 4.5e-199 698.0 414 84.8
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 4.5e-199 698.0 414 85.5
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 2.9e-198 695.3 413 85.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.9e-198 695.3 412 84.2
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.1e-197 693.3 410 86.6
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-197 693.0 414 84.3
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.9e-197 692.6 411 86.1
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.9e-197 692.6 414 84.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 3.2e-197 691.8 414 83.6
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.2e-197 691.4 414 83.6
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 5.4e-197 691.0 414 83.6
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 7.1e-197 690.6 414 83.3
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 9.3e-197 690.3 414 83.8
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.1e-196 689.1 414 83.8
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.1e-196 689.1 414 83.6
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.5e-196 688.3 414 83.3
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 4.6e-196 688.0 413 84.0
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.6e-196 688.0 414 83.8
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 6.0e-196 687.6 413 83.5
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.3e-195 686.4 411 83.7
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.3e-195 686.4 413 84.0
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 2.3e-195 685.6 413 84.0
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.3e-195 685.6 414 83.1
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.5e-194 682.9 413 82.6
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 3.3e-194 681.8 413 82.3
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 7.4e-194 680.6 411 83.2
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 7.4e-194 680.6 415 84.1
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 82.6
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.8e-192 676.0 414 82.1
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.8e-192 676.0 413 83.8
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 3.1e-192 675.2 414 81.9
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.1e-192 675.2 413 82.1
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 4.0e-192 674.9 414 82.1
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 5.3e-192 674.5 414 81.4
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 5.3e-192 674.5 409 82.4
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 5.3e-192 674.5 413 81.4
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 6.9e-192 674.1 414 81.6
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 6.9e-192 674.1 414 81.6
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.0e-191 672.5 414 81.2
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 2.6e-191 672.2 413 81.1
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 3.4e-191 671.8 414 81.4
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 4.5e-191 671.4 414 81.6
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 5.8e-191 671.0 414 80.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 7.6e-191 670.6 416 81.5
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.0e-190 670.2 414 81.4
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.0e-190 670.2 414 81.4
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.3e-190 669.8 414 81.6
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.3e-190 669.8 411 81.5
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.9e-190 667.9 414 81.4
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 4.9e-190 667.9 414 81.2
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 6.5e-190 667.5 420 80.7
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 2.3e-187 659.1 426 79.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 2.3e-187 659.1 426 79.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 3.0e-187 658.7 414 79.7
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 3.9e-187 658.3 426 78.9
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 6.7e-187 657.5 420 79.0
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.1e-184 650.2 415 79.5
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.3e-184 647.9 411 80.3
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 9.0e-184 647.1 414 78.3
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 5.8e-183 644.4 429 76.7
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 5.0e-182 641.3 438 76.0
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 5.0e-182 641.3 414 79.5
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 5.5e-181 637.9 415 77.3
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 9.3e-181 637.1 414 78.3
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 2.7e-180 635.6 415 77.1
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.7e-180 635.6 415 76.6
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.1e-176 623.6 371 85.7
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.1e-176 623.6 413 73.1
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.1e-176 622.1 375 84.3
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-175 619.8 416 76.9
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.0e-170 602.8 406 76.4
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.3e-166 590.1 410 71.0
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 6.5e-166 587.8 371 82.2
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.5e-165 585.9 414 73.2
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 3.2e-165 585.5 412 73.5
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 4.2e-165 585.1 319 93.1
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 1.4e-163 580.1 410 73.2
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 7.7e-159 564.3 418 71.1
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.3e-158 563.5 410 68.5
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 3.0e-155 552.4 485 64.1
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.6e-151 540.0 411 69.8
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.0e-147 527.3 398 65.6
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.5e-146 523.5 405 62.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 2.0e-143 513.1 412 62.4
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 8.5e-142 507.7 296 85.1
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.3e-137 493.8 305 80.0
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.4e-136 489.6 281 87.9
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.1e-136 488.8 281 87.9
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.9e-129 466.1 257 91.4
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.6e-119 433.7 314 71.3
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 6.0e-119 431.8 285 75.4
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.1e-117 427.6 256 82.0
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 2.7e-111 406.4 313 68.1
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 8.6e-102 374.8 284 68.0
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.5e-101 374.0 411 49.1
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-101 373.6 292 70.2
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.9e-88 330.5 191 88.0
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 4.5e-82 309.3 205 74.6
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.2e-79 301.2 238 65.5
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 8.7e-78 295.0 184 76.1
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 8.4e-73 278.5 173 80.9
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-69 267.7 199 68.3
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.4e-64 251.1 401 37.4
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.5e-64 249.2 204 65.7
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 2.6e-58 230.3 220 56.4
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 5.9e-58 229.2 140 82.1
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 2.2e-57 227.3 400 34.2
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 4.6e-55 219.5 321 35.8
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.0e-49 199.5 126 79.4
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.5e-49 199.1 199 58.3
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 2.1e-47 194.1 120 75.0
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.7e-44 183.3 161 62.1
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.2e-44 182.2 177 56.5
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 7.2e-40 169.1 414 32.6
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.2e-39 168.3 102 76.5
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.7e-36 157.9 114 68.4
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.7e-34 150.6 107 63.6
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.2e-33 147.5 83 83.1
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 9.4e-32 142.1 80 83.8
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-27 128.6 115 63.5
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 7.0e-19 99.4 99 58.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.2e-18 98.6 51 92.2
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 2.3e-17 94.4 127 51.2
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 5.0e-17 93.2 159 39.6
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.5e-16 91.7 143 45.5
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.4e-14 85.1 146 43.8
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.5e-13 81.6 59 79.7
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-12 78.2 50 76.0
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.2e-11 73.9 72 56.9
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 4.6e-10 70.1 55 65.5
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 3.9e-09 67.0 40 82.5
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.5e-08 65.1 76 48.7
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.1e-06 58.9 45 68.9


User provided reference genes

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