Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033444 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 1.5e-257 892.5 487 100.0
CSS0008425 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 1.0e-255 886.3 484 99.8
Rhsim01G0130500 Rhododendron simsii HOM05D003126 ORTHO05D005034 1.4e-172 610.1 533 64.4
Actinidia21560 Actinidia chinensis HOM05D003126 ORTHO05D005034 5.1e-170 601.7 484 67.6
Actinidia20677 Actinidia chinensis HOM05D003126 ORTHO05D005034 2.8e-168 595.9 484 67.6
vmacro21181 Vaccinium macrocarpon HOM05D003126 ORTHO05D005034 1.4e-164 583.6 551 59.5
Dinv43458 Davidia involucrata HOM05D003126 ORTHO05D005034 3.4e-158 562.4 481 64.4
GSVIVG01032066001 Vitis vinifera HOM05D003126 ORTHO05D005034 7.9e-155 551.2 489 62.8
Hma1.2p1_0312F.1_g121420 Hydrangea macrophylla HOM05D003126 ORTHO05D005034 4.4e-153 545.4 484 61.4
Haze_03230 Corylus avellana HOM05D003126 ORTHO05D005034 6.1e-147 525.0 485 59.2
Dinv09367 Davidia involucrata HOM05D003126 ORTHO05D005034 1.0e-146 524.2 397 69.8
QL04p005483 Quercus lobata HOM05D003126 ORTHO05D005034 1.3e-144 517.3 485 58.6
TAR636G3316 Trochodendron aralioides HOM05D003126 ORTHO05D005034 9.1e-143 511.1 485 58.4
TAR633G1448 Trochodendron aralioides HOM05D003126 ORTHO05D005034 8.5e-141 504.6 476 59.2
RcHm_v2.0_Chr1g0314991 Rosa chinensis HOM05D003126 ORTHO05D005034 1.9e-140 503.4 474 58.4
Cfa010743 Carpinus fangiana HOM05D003126 ORTHO05D005034 4.2e-140 502.3 485 60.4
FAN03G0993 Fragaria x ananassa HOM05D003126 ORTHO05D005034 1.5e-137 493.8 474 57.0
FAN10G2088 Fragaria x ananassa HOM05D003126 ORTHO05D005034 8.2e-136 488.0 474 57.2
FvH4_7g00830 Fragaria vesca HOM05D003126 ORTHO05D005034 1.1e-135 487.6 474 57.2
FAN06G0385 Fragaria x ananassa HOM05D003126 ORTHO05D005034 1.1e-135 487.6 474 57.2
Thecc.01G412800 Theobroma cacao HOM05D003126 ORTHO05D005034 4.1e-135 485.7 477 56.6
CiPaw.13G003500 Carya illinoinensis HOM05D003126 ORTHO05D005034 2.7e-134 483.0 484 55.4
Duzib138G0006 Durio zibethinus HOM05D003126 ORTHO05D005034 2.2e-133 479.9 483 56.7
Potri.001G269200 Populus trichocarpa HOM05D003126 ORTHO05D005034 3.2e-132 476.1 484 54.8
Potri.009G063800 Populus trichocarpa HOM05D003126 ORTHO05D005034 8.0e-131 471.5 484 54.1
Prupe.2G010500 Prunus persica HOM05D003126 ORTHO05D005034 1.8e-130 470.3 476 55.9
MD07G1007800 Malus domestica HOM05D003126 ORTHO05D005034 5.2e-130 468.8 475 54.7
CANSAT80G2854 Cannabis sativa HOM05D003126 ORTHO05D005034 2.0e-129 466.8 486 55.6
Atru.chr11.2643 Acer truncatum HOM05D003126 ORTHO05D005034 3.4e-129 466.1 486 54.9
MD02G1314400 Malus domestica HOM05D003126 ORTHO05D005034 3.4e-129 466.1 474 55.1
Gohir.D08G038300 Gossypium hirsutum HOM05D003126 ORTHO05D005034 5.0e-125 452.2 486 54.1
Gohir.A08G027600 Gossypium hirsutum HOM05D003126 ORTHO05D005034 8.5e-125 451.4 486 54.3
Ciclev10033914m.g Citrus clementina HOM05D003126 ORTHO05D005034 4.7e-123 445.7 486 57.6
TWI09G0721 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 3.0e-122 443.0 484 51.0
Gorai.004G036800 Gossypium raimondii HOM05D003126 ORTHO05D005034 1.2e-121 441.0 480 54.2
Duzib268G0285 Durio zibethinus HOM05D003126 ORTHO05D005034 2.0e-121 440.3 473 54.5
MBI01_g27625_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D005034 2.6e-121 439.9 495 52.9
Sabra09G0047100 Salix brachista HOM05D003126 ORTHO05D005034 3.1e-119 433.0 490 51.6
Sabra16G0164800 Salix brachista HOM05D003126 ORTHO05D005034 5.9e-118 428.7 496 51.4
COL.COLO4_23919 Corchorus olitorius HOM05D003126 ORTHO05D005034 7.8e-118 428.3 484 54.1
Manes.10G145600 Manihot esculenta HOM05D003126 ORTHO05D005034 1.0e-117 427.9 488 51.8
Nn7g36179 Nelumbo nucifera HOM05D003126 ORTHO05D005034 1.2e-115 421.0 480 51.0
TWI73G1191 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 9.8e-113 411.4 484 48.3
Nn1g00625 Nelumbo nucifera HOM05D003126 ORTHO05D005034 2.2e-112 410.2 481 50.9
Nn1g00624 Nelumbo nucifera HOM05D003126 ORTHO05D005034 3.7e-112 409.5 481 50.9
Glyma.08G153100 Glycine max HOM05D003126 ORTHO05D005034 5.0e-109 399.1 488 50.6
Aqoxy1G00215 Aquilegia oxysepala HOM05D003126 ORTHO05D005034 9.5e-108 394.8 491 48.9
TPR.G12288 Trifolium pratense HOM05D003126 ORTHO05D005034 1.6e-107 394.0 484 49.6
AUR62009373 Chenopodium quinoa HOM05D003126 ORTHO05D005034 3.6e-107 392.9 497 48.3
Phvul.005G036300 Phaseolus vulgaris HOM05D003126 ORTHO05D005034 8.0e-107 391.7 488 49.8
Glyma.15G272900 Glycine max HOM05D003126 ORTHO05D005034 7.5e-105 385.2 487 49.7
Medtr3g028140 Medicago truncatula HOM05D003126 ORTHO05D005034 2.9e-104 383.3 489 47.9
EL10Ac2g04311 Beta vulgaris HOM05D003126 ORTHO05D005034 4.9e-104 382.5 478 50.2
Hund03667 Selenicereus undatus HOM05D003126 ORTHO05D005034 4.1e-103 379.4 478 46.2
Lj9C630G6 Lonicera japonica HOM05D003126 ORTHO05D005034 9.2e-103 378.3 487 49.3
Nitab4.5_0003361g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 4.6e-102 375.9 486 47.5
Lalb_Chr25g0283141 Lupinus albus HOM05D003126 ORTHO05D005034 3.0e-101 373.2 487 47.4
VMungo1080G1220 Vigna mungo HOM05D003126 ORTHO05D005034 6.6e-101 372.1 492 48.8
DCAR_006297 Daucus carota HOM05D003126 ORTHO05D005034 5.6e-100 369.0 497 48.1
Nitab4.5_0000634g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 7.3e-100 368.6 486 47.5
Oeu047556.1 Olea europaea HOM05D003126 ORTHO05D005034 1.2e-99 367.9 486 47.1
Lj3g0024945 Lotus japonicus HOM05D003126 ORTHO05D005034 6.8e-98 362.1 483 47.6
Ca_14367_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 1.2e-97 361.3 475 47.8
Lalb_Chr19g0132091 Lupinus albus HOM05D003126 ORTHO05D005034 1.5e-97 360.9 483 50.5
PSO384G4480 Papaver somniferum HOM05D003126 ORTHO05D005034 2.2e-96 357.1 488 45.1
PSO339G3182 Papaver somniferum HOM05D003126 ORTHO05D005034 2.9e-96 356.7 488 44.7
CAN.G170.119 Capsicum annuum HOM05D003126 ORTHO05D005034 6.4e-96 355.5 486 44.7
Cc02_g27720 Coffea canephora HOM05D003126 ORTHO05D005034 1.1e-95 354.8 477 47.2
Oeu010350.1 Olea europaea HOM05D003126 ORTHO05D005034 3.2e-95 353.2 467 46.0
Sopen01g033970 Solanum pennellii HOM05D003126 ORTHO05D005034 2.7e-94 350.1 480 46.9
Sc11g0009280 Simmondsia chinensis HOM05D003126 ORTHO05D005034 5.1e-93 345.9 482 44.8
Eucgr.J01261 Eucalyptus grandis HOM05D003126 ORTHO05D005034 1.5e-92 344.4 486 44.4
Lj3g0014064 Lotus japonicus HOM05D003126 ORTHO05D005034 2.5e-92 343.6 480 45.0
AUR62023054 Chenopodium quinoa HOM05D003126 ORTHO05D005034 4.7e-91 339.3 519 43.7
Lalb_Chr03g0033961 Lupinus albus HOM05D003126 ORTHO05D005034 1.1e-90 338.2 483 46.4
Psat5g204360 Pisum sativum HOM05D003126 ORTHO05D005034 3.1e-90 336.7 488 46.3
arahy.Tifrunner.gnm1.ann1.6ZH3JQ Arachis hypogaea HOM05D003126 ORTHO05D005034 1.5e-89 334.3 480 46.0
MELO3C023966.2 Cucumis melo HOM05D003126 ORTHO05D005034 2.9e-88 330.1 490 44.3
Psat4g148400 Pisum sativum HOM05D003126 ORTHO05D005034 2.9e-88 330.1 474 46.0
Solyc01g086980.4 Solanum lycopersicum HOM05D003126 ORTHO05D005034 1.2e-86 324.7 479 44.3
TPR.G28465 Trifolium pratense HOM05D003126 ORTHO05D005034 3.5e-86 323.2 498 43.2
PGR044G1687 Punica granatum HOM05D003126 ORTHO05D005034 2.3e-85 320.5 477 42.1
Sed0002072 Sechium edule HOM05D003126 ORTHO05D005034 2.5e-84 317.0 489 43.1
Peaxi162Scf00428g00715 Petunia axillaris HOM05D003126 ORTHO05D005034 1.1e-82 311.6 489 42.5
Ca_23876_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 4.4e-81 306.2 489 42.9
MSTRG.20596 Avicennia marina HOM05D003126 ORTHO05D005034 2.4e-79 300.4 486 43.8
ATR0605G133 Amborella trichopoda HOM05D003126 ORTHO05D005034 2.1e-78 297.4 505 40.2
ClCG10G012470 Citrullus lanatus HOM05D003126 ORTHO05D005034 2.5e-76 290.4 490 40.8
Migut.N01475 Erythranthe guttata HOM05D003126 ORTHO05D005034 2.8e-75 287.0 495 40.4
Sed0019357 Sechium edule HOM05D003126 ORTHO05D005034 2.4e-71 273.9 499 38.9
CsaV3_3G032240 Cucumis sativus L. HOM05D003126 ORTHO05D005034 5.4e-71 272.7 490 40.2
HPP92_015771 Vanilla planifolia HOM05D003126 ORTHO05D005034 5.4e-71 272.7 495 36.6
Migut.B01323 Erythranthe guttata HOM05D003126 ORTHO05D005034 5.3e-66 256.1 530 39.1
ECA248G0857 Erigeron canadensis HOM05D003126 ORTHO05D005034 6.9e-66 255.8 484 38.4
Lj7A569T65 Lonicera japonica HOM05D003126 ORTHO05D005034 1.2e-65 255.0 333 49.2
Medtr8g037000 Medicago truncatula HOM05D003126 ORTHO05D005034 1.5e-65 254.6 603 37.1
CDE07G1013 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 2.0e-65 254.2 492 37.6
Lsat_1_v5_gn_1_108381 Lactuca sativa HOM05D003126 ORTHO05D005034 1.3e-64 251.5 500 38.8
HanXRQChr06g0185401 Helianthus annuus HOM05D003126 ORTHO05D005034 1.4e-63 248.1 478 37.9
SGA_v2.0_scaffold4G02256 Striga asiatica HOM05D003126 ORTHO05D005034 2.7e-62 243.8 487 39.6
FAN01G1724 Fragaria x ananassa HOM05D003126 ORTHO05D005034 7.9e-62 242.3 232 56.5
arahy.Tifrunner.gnm1.ann1.4P5PRD Arachis hypogaea HOM05D003126 ORTHO05D005034 1.5e-60 238.0 300 50.7
CDE04G0460 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 4.3e-60 236.5 492 36.0
THA.LOC104809863 Tarenaya hassleriana HOM05D003126 ORTHO05D005034 2.6e-57 227.3 486 34.8
HanXRQChr01g0016081 Helianthus annuus HOM05D003126 ORTHO05D005034 5.8e-57 226.1 483 36.9
AL3G24310 Arabidopsis lyrata HOM05D003126 ORTHO05D005034 1.6e-54 218.0 474 34.8
Aa31LG3G10 Aethionema arabicum HOM05D003126 ORTHO05D005034 2.4e-50 204.1 485 32.4
SGA_v2.0_scaffold95G28793 Striga asiatica HOM05D003126 ORTHO05D005034 1.2e-49 201.8 479 37.6
AT3G12640 Arabidopsis thaliana HOM05D003126 ORTHO05D005034 2.0e-49 201.1 474 34.2
Cpa.g.sc245.6 Carica papaya HOM05D003126 ORTHO05D005034 1.7e-48 198.0 212 54.7
Carub.0003s1199 Capsella rubella HOM05D003126 ORTHO05D005034 3.6e-46 190.3 474 32.1
Thhalv10020251m.g Eutrema salsugineum HOM05D003126 ORTHO05D005034 6.3e-43 179.5 350 37.1
BcaB04g18712 Brassica carinata HOM05D003126 ORTHO05D005034 5.3e-42 176.4 484 33.5
CARHR087150 Cardamine hirsuta HOM05D003126 ORTHO05D005034 1.3e-40 171.8 479 29.6
BraA03t12928Z Brassica rapa HOM05D003126 ORTHO05D005034 2.2e-40 171.0 481 31.2
Os08g0504600 Oryza sativa ssp. japonica HOM05D003126 ORTHO05D005034 3.8e-40 170.2 452 31.6
C03p45780 Brassica napus HOM05D003126 ORTHO05D005034 1.1e-39 168.7 350 34.9
BolC1t05192H Brassica oleracea HOM05D003126 ORTHO05D005034 1.9e-39 167.9 295 38.0
Sp3g10780 Schrenkiella parvula HOM05D003126 ORTHO05D005034 1.9e-39 167.9 474 30.2
A03p37730 Brassica napus HOM05D003126 ORTHO05D005034 3.2e-39 167.2 475 30.3
BcaC01g04024 Brassica carinata HOM05D003126 ORTHO05D005034 5.5e-39 166.4 457 31.5
Zm00001eb199820 Zea mays HOM05D003126 ORTHO05D005034 5.5e-39 166.4 517 29.4
Zm00001eb034750 Zea mays HOM05D003126 ORTHO05D005034 1.0e-37 162.2 517 29.4
BolC3t16853H Brassica oleracea HOM05D003126 ORTHO05D005034 3.0e-37 160.6 461 31.2
Zm00001eb079940 Zea mays HOM05D003126 ORTHO05D005034 1.5e-36 158.3 448 33.0
BNapus_Darmor_BZH_scaffold_149p00170 Brassica napus HOM05D003126 ORTHO05D005034 2.0e-36 157.9 354 32.8
BraA01t04119Z Brassica rapa HOM05D003126 ORTHO05D005034 2.0e-36 157.9 354 32.8
Zm00001eb424740 Zea mays HOM05D003126 ORTHO05D005034 4.4e-36 156.8 452 32.1
C01p52530 Brassica napus HOM05D003126 ORTHO05D005034 5.7e-36 156.4 354 33.3
Cpa.g.sc1688.1 Carica papaya HOM05D003126 ORTHO05D005034 7.4e-36 156.0 144 57.6
Lsat_1_v5_gn_8_14081 Lactuca sativa HOM05D003126 ORTHO05D005034 2.4e-34 151.0 272 41.5
unitig_85.g27215 Utricularia gibba HOM05D003126 ORTHO05D005034 3.8e-32 143.7 436 33.5
SEGI_13274 Sequoiadendron giganteum HOM05D003126 ORTHO05D005034 4.2e-31 140.2 482 30.5
BcaB04g21048 Brassica carinata HOM05D003126 ORTHO05D005034 3.0e-29 134.0 343 32.1
SEGI_32234 Sequoiadendron giganteum HOM05D003126 ORTHO05D005034 1.4e-21 108.6 466 29.0
SMO116G0171 Selaginella moellendorffii HOM05D003126 ORTHO05D005034 1.8e-21 108.2 389 27.0
AagrBONN_evm.TU.Sc2ySwM_117.3410 Anthoceros agrestis HOM05D003126 ORTHO05D005034 2.0e-17 94.7 323 28.8
Mapoly0177s0019 Marchantia polymorpha HOM05D003126 ORTHO05D005034 8.5e-16 89.4 391 29.2
Pp3c3_23400 Physcomitrium patens HOM05D003126 ORTHO05D005034 1.0e-08 65.9 67 43.3
CDE07G0165 Ceratophyllum demersum HOM05D003126 ORTHO05D010530 8.6e-08 62.8 121 33.9
COL.COLO4_05708 Corchorus olitorius HOM05D003126 ORTHO05D010530 1.9e-07 61.6 71 42.3
Duzib168G1775 Durio zibethinus HOM05D003126 ORTHO05D010530 1.9e-07 61.6 65 46.2
Pp3c10_12150 Physcomitrium patens HOM05D003126 ORTHO05D005034 1.2e-06 58.9 232 28.0
Rhsim03G0058300 Rhododendron simsii HOM05D003126 ORTHO05D010530 1.2e-06 58.9 39 61.5
Thecc.09G153400 Theobroma cacao HOM05D003126 ORTHO05D010530 1.6e-06 58.5 75 36.0
MBI16_g00828_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D010530 2.1e-06 58.2 49 46.9
vmacro07518 Vaccinium macrocarpon HOM05D003126 ORTHO05D010530 2.1e-06 58.2 39 61.5
Gorai.009G009200 Gossypium raimondii HOM05D003126 ORTHO05D010530 3.6e-06 57.4 66 43.9


User provided reference genes

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