Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.0e-175 620.2 309 100.0
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 3.7e-130 468.8 299 79.9
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 4.3e-110 402.1 299 67.2
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 9.9e-107 391.0 299 65.6
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 1.6e-104 383.6 299 64.5
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 3.3e-102 375.9 299 64.9
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 1.2e-96 357.5 299 59.5
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 7.8e-96 354.8 299 58.9
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 1.0e-95 354.4 299 61.9
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 1.3e-95 354.0 298 61.1
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 3.9e-95 352.4 299 59.5
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 8.7e-95 351.3 299 59.9
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 9.6e-94 347.8 299 59.2
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 1.2e-93 347.4 299 58.2
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 4.7e-93 345.5 241 70.1
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 9.0e-92 341.3 299 58.9
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 9.0e-92 341.3 299 57.9
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 1.2e-91 340.9 299 58.9
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 2.0e-91 340.1 299 57.5
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 2.0e-91 340.1 299 57.9
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 3.4e-91 339.3 299 57.9
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 3.4e-91 339.3 299 57.9
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 5.8e-91 338.6 299 58.2
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 7.6e-91 338.2 299 56.9
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 9.9e-91 337.8 299 57.5
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 2.2e-90 336.7 299 57.9
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 2.9e-90 336.3 299 56.2
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 3.8e-90 335.9 299 56.9
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 8.4e-90 334.7 299 56.9
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 1.9e-89 333.6 296 57.1
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 1.9e-89 333.6 299 56.5
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 3.2e-89 332.8 299 55.5
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 4.2e-89 332.4 297 58.6
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 5.4e-89 332.0 299 55.9
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 5.4e-89 332.0 296 58.1
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 7.1e-89 331.6 299 56.2
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 6.0e-88 328.6 299 55.5
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 1.0e-87 327.8 296 58.4
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.7e-87 327.0 301 55.5
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 2.3e-87 326.6 301 55.5
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 3.0e-87 326.2 296 56.4
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 3.9e-87 325.9 296 57.8
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 3.9e-87 325.9 301 56.8
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 5.1e-87 325.5 300 55.7
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 8.7e-87 324.7 300 55.3
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 8.7e-87 324.7 297 56.6
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.5e-86 323.9 300 55.3
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 1.5e-86 323.9 300 55.3
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 1.5e-86 323.9 301 54.8
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 2.5e-86 323.2 299 55.5
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 4.3e-86 322.4 298 56.4
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 5.6e-86 322.0 299 56.2
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 5.6e-86 322.0 296 56.1
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 7.3e-86 321.6 297 56.2
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 7.3e-86 321.6 296 55.4
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 9.6e-86 321.2 312 55.8
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 9.6e-86 321.2 299 54.5
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 9.6e-86 321.2 300 54.7
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 1.6e-85 320.5 296 55.7
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 2.1e-85 320.1 296 55.7
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 2.1e-85 320.1 299 54.8
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 2.8e-85 319.7 299 53.8
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 3.6e-85 319.3 303 55.1
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 4.8e-85 318.9 300 55.0
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 6.2e-85 318.5 300 54.7
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 8.1e-85 318.2 300 54.3
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 8.1e-85 318.2 299 57.5
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.8e-84 317.0 299 53.8
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 2.4e-84 316.6 302 56.0
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 4.0e-84 315.8 300 54.7
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 4.0e-84 315.8 296 54.4
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 1.2e-83 314.3 300 54.0
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 3.4e-83 312.8 296 55.7
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 9.9e-83 311.2 304 54.9
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.7e-82 310.5 299 53.2
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 2.2e-82 310.1 300 55.0
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 6.4e-82 308.5 299 53.5
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 8.4e-82 308.1 299 54.5
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 3.2e-81 306.2 300 52.0
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 1.3e-79 300.8 300 52.3
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 1.9e-78 297.0 301 49.8
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 1.3e-77 294.3 299 50.8
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 2.1e-77 293.5 299 54.8
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 8.1e-77 291.6 285 54.7
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 1.8e-76 290.4 297 49.5
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 6.9e-76 288.5 297 50.8
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 1.2e-72 277.7 238 60.1
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 2.1e-72 276.9 299 51.2
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 8.2e-69 265.0 283 49.8
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 3.4e-67 259.6 285 50.9
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 5.8e-67 258.8 300 48.0
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 1.8e-60 237.3 348 38.8
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 5.9e-59 232.3 210 55.7
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 1.4e-57 227.6 339 39.2
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 2.1e-56 223.8 296 40.5
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 5.7e-54 215.7 233 49.8
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 5.7e-54 215.7 384 35.4
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 1.0e-47 194.9 210 51.4
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 1.8e-44 184.1 256 38.3
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 1.8e-44 184.1 304 37.2
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 1.5e-38 164.5 257 37.0
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 5.7e-38 162.5 310 33.5
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 7.2e-33 145.6 260 34.2
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 7.5e-30 135.6 112 58.9
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 4.8e-29 132.9 112 58.9
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 4.0e-23 113.2 113 55.8
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 2.0e-22 110.9 300 30.7
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 3.7e-21 106.7 114 48.2
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 2.9e-18 97.1 83 56.6
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 6.6e-18 95.9 88 55.7
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 2.8e-16 90.5 90 53.3
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 2.7e-11 73.9 81 44.4
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 7.3e-09 65.9 65 52.3
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 8.0e-08 62.4 44 65.9
C09p09270 Brassica napus HOM05D039327 ORTHO05D041005 2.3e-07 60.8 52 61.5
BolC9t53840H Brassica oleracea HOM05D039327 ORTHO05D041005 2.3e-07 60.8 52 61.5
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 1.2e-06 58.5 42 59.5


User provided reference genes

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