Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 3537.7 1959 100.0
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2794.6 1794 82.3
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2667.1 1867 77.3
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2586.2 1955 74.1
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2544.6 1804 75.9
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2502.6 1949 70.9
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2498.0 1863 73.0
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2488.4 1991 70.5
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2478.4 1836 72.8
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2473.0 1840 72.2
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2465.3 1944 72.4
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2456.8 1847 72.3
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2446.4 1839 72.0
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2433.3 1847 71.1
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2432.1 1844 71.3
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2431.4 1831 71.0
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2426.7 1942 69.8
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2426.7 1839 71.5
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2424.0 1837 71.0
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2424.0 1839 71.1
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2420.6 1811 73.0
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2412.5 1811 71.4
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2409.4 1836 71.2
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2404.4 1943 69.6
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2388.2 1958 70.1
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2379.0 1839 70.0
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2367.0 1840 69.9
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2365.9 1833 69.6
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2364.3 1833 69.5
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2364.3 1943 68.5
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2364.3 1947 69.6
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2360.5 1957 68.6
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2359.3 1947 68.9
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2357.0 1844 69.5
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2353.2 1832 69.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2348.9 1944 68.9
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2344.3 1801 70.8
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2340.1 1914 69.3
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2339.7 1831 69.3
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2336.6 1831 69.1
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2336.2 1843 68.5
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2335.8 1822 69.5
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2331.2 1865 68.3
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2331.2 1946 68.1
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2330.8 1928 66.8
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2328.1 1874 68.1
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2327.0 1820 69.6
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2322.0 1942 68.1
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2321.2 1801 70.1
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2317.0 1946 69.1
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2314.3 1958 67.1
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2306.2 1832 69.7
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2305.4 1937 67.4
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2296.9 1836 68.0
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2293.1 1826 68.1
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2288.8 1834 67.8
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2288.1 1822 68.4
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2285.8 1942 67.8
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2280.0 1826 68.1
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 2277.7 1731 72.4
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2273.8 1835 67.6
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2260.7 1948 66.2
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2259.2 1819 67.7
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2257.6 1835 67.8
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2257.3 1836 67.8
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2236.5 1835 66.6
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2223.7 1826 66.8
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2223.4 1939 65.7
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2218.0 1836 66.9
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2217.2 1850 66.1
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2209.9 1858 66.3
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2206.8 1829 66.3
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 2197.9 1687 70.8
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2194.1 1829 66.1
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2184.1 1966 65.3
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2178.3 1845 64.9
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2177.9 1948 64.9
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2166.3 1944 65.3
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2165.6 1825 66.5
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2154.8 1832 65.2
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2145.2 1862 65.1
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2107.8 1863 63.2
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2107.0 1856 63.0
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 2019.2 1837 61.5
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1996.5 1845 60.7
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1976.8 1864 60.0
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1965.3 1836 61.5
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1962.6 1837 60.2
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1944.5 1881 58.8
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1892.1 1919 56.1
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1872.4 1230 81.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1867.4 1901 56.1
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1854.7 1846 58.6
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1849.7 1893 55.7
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1847.8 1893 55.7
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1844.7 1866 56.5
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1843.6 1900 55.7
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1842.0 1898 55.7
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1840.5 1901 55.8
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1832.4 1886 56.0
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1829.7 1894 55.9
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1823.5 1886 55.5
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1822.4 1898 55.3
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1819.7 1897 55.3
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1817.7 1897 55.2
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1817.7 1897 55.2
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1789.2 1897 54.8
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1717.6 1235 76.3
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1692.6 1839 53.5
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1676.4 1480 65.8
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1631.7 1825 52.5
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1586.2 1236 69.2
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1543.1 1866 51.8
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1513.0 1940 49.2
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1497.6 1863 50.5
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1491.1 1883 49.1
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1491.1 1883 49.1
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1457.2 923 83.5
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1438.3 1341 58.9
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1341.6 991 72.7
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1309.7 1518 52.8
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1262.7 1029 72.2
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1260.0 1773 45.7
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1228.4 1354 56.2
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1158.3 857 74.7
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 0.0e+00 1135.9 1453 50.7
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 5.4e-295 1018.8 742 72.4
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.9e-284 983.8 1617 41.2
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.2e-270 937.9 812 65.5
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.5e-265 919.5 1833 36.6
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.5e-254 883.2 873 57.6
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.4e-220 770.0 615 74.0
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 4.4e-196 690.3 497 72.6
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 2.4e-194 684.5 709 55.0
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.2e-187 661.4 651 55.9
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 8.3e-187 659.4 648 55.2
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.0e-168 597.8 339 84.4
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 6.8e-165 586.6 616 55.5
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-152 545.8 561 63.3
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.1e-150 538.5 559 63.9
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 8.2e-134 483.4 464 59.1
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.2e-121 443.0 1251 29.3
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 1.8e-120 439.1 422 59.2
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.3e-91 343.2 851 34.3
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 9.2e-85 320.5 646 35.8
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.0e-80 307.0 224 77.2
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 9.8e-79 300.4 455 41.3
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.7e-78 298.5 413 42.9
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.8e-77 296.2 2075 22.9
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.6e-76 293.1 485 42.9
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 8.0e-73 280.8 198 78.8
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 2.0e-63 249.6 161 77.0
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 3.2e-53 215.7 273 47.6
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 3.3e-42 179.1 231 54.5
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.9e-34 153.3 187 70.1
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 4.8e-33 148.7 247 42.9
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 7.9e-28 131.3 168 51.2
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 3.9e-19 102.4 78 64.1
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 3.3e-18 99.4 96 57.3
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 4.1e-16 92.4 60 76.7
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 3.4e-15 89.4 103 45.6
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.8e-11 77.0 52 69.2
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.3e-09 70.9 48 64.6
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.5e-07 63.9 33 81.8
Hma1.2p1_0214F.1_g090630 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.0e-06 61.2 39 76.9
EL10Ac7g17257 Beta vulgaris HOM05D002037 ORTHO05D021575 2.9e-06 59.7 40 72.5
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 5.0e-06 58.9 38 71.1


User provided reference genes

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