Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D028418 5.8e-29 130.2 65 100.0
CSS0030183 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D028418 9.6e-24 112.8 65 92.3
Actinidia22418 Actinidia chinensis HOM05D000104 ORTHO05D006385 5.0e-12 73.9 47 76.6
Actinidia33653 Actinidia chinensis HOM05D000104 ORTHO05D006385 1.4e-11 72.4 46 76.1
Haze_06104 Corylus avellana HOM05D000104 ORTHO05D006385 1.4e-11 72.4 46 69.6
Cfa000689 Carpinus fangiana HOM05D000104 ORTHO05D006385 1.9e-11 72.0 46 69.6
QL11p013542 Quercus lobata HOM05D000104 ORTHO05D006385 3.2e-11 71.2 46 69.6
CSS0049241 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006385 9.3e-11 69.7 46 71.7
Lj2C344G7 Lonicera japonica HOM05D000104 ORTHO05D006385 1.2e-10 69.3 46 73.9
Dinv09066 Davidia involucrata HOM05D000104 ORTHO05D006385 2.1e-10 68.6 46 71.7
MELO3C007018.2 Cucumis melo HOM05D000104 ORTHO05D006385 3.5e-10 67.8 57 54.4
Duzib132G0144 Durio zibethinus HOM05D000104 ORTHO05D006385 7.9e-10 66.6 46 67.4
Gohir.A12G048001 Gossypium hirsutum HOM05D000104 ORTHO05D006385 7.9e-10 66.6 46 67.4
Gorai.008G049300 Gossypium raimondii HOM05D000104 ORTHO05D006385 1.0e-09 66.2 46 67.4
Potri.003G110100 Populus trichocarpa HOM05D000104 ORTHO05D006385 1.0e-09 66.2 46 69.6
CiPaw.09G075000 Carya illinoinensis HOM05D000104 ORTHO05D006385 1.8e-09 65.5 46 67.4
TWI15G0050 Tripterygium wilfordii HOM05D000104 ORTHO05D006385 1.8e-09 65.5 46 69.6
Duzib248G0971 Durio zibethinus HOM05D000104 ORTHO05D006385 2.3e-09 65.1 46 63.0
CiPaw.10G063100 Carya illinoinensis HOM05D000104 ORTHO05D006385 3.9e-09 64.3 46 60.9
Potri.001G123400 Populus trichocarpa HOM05D000104 ORTHO05D006385 3.9e-09 64.3 46 69.6
Sabra01G0095100 Salix brachista HOM05D000104 ORTHO05D006385 3.9e-09 64.3 46 67.4
Atru.chr10.483 Acer truncatum HOM05D000104 ORTHO05D006385 6.7e-09 63.5 46 65.2
Rhsim02G0169000 Rhododendron simsii HOM05D000104 ORTHO05D006385 6.7e-09 63.5 45 66.7
TWI63G1682 Tripterygium wilfordii HOM05D000104 ORTHO05D006385 8.7e-09 63.2 46 67.4
vmacro11005 Vaccinium macrocarpon HOM05D000104 ORTHO05D006385 8.7e-09 63.2 46 65.2
Manes.16G060500 Manihot esculenta HOM05D000104 ORTHO05D006385 1.1e-08 62.8 46 60.9
Sabra03G0076300 Salix brachista HOM05D000104 ORTHO05D006385 1.1e-08 62.8 46 65.2
COL.COLO4_17640 Corchorus olitorius HOM05D000104 ORTHO05D006385 1.5e-08 62.4 46 60.9
CsaV3_6G052880 Cucumis sativus L. HOM05D000104 ORTHO05D006385 1.5e-08 62.4 46 58.7
Cpa.g.sc30.142 Carica papaya HOM05D000104 ORTHO05D006385 2.5e-08 61.6 46 71.7
RcHm_v2.0_Chr5g0020581 Rosa chinensis HOM05D000104 ORTHO05D006385 2.5e-08 61.6 46 65.2
THA.LOC104806217 Tarenaya hassleriana HOM05D000104 ORTHO05D006385 3.3e-08 61.2 44 68.2
GSVIVG01012117001 Vitis vinifera HOM05D000104 ORTHO05D006385 3.3e-08 61.2 46 67.4
TAR626G0969 Trochodendron aralioides HOM05D000104 ORTHO05D006385 4.3e-08 60.8 46 65.2
Duzib052G0523 Durio zibethinus HOM05D000104 ORTHO05D006385 5.7e-08 60.5 45 60.0
ClCG01G025670 Citrullus lanatus HOM05D000104 ORTHO05D006385 7.4e-08 60.1 46 58.7
THA.LOC104812917 Tarenaya hassleriana HOM05D000104 ORTHO05D006385 7.4e-08 60.1 45 64.4
FvH4_3g12610 Fragaria vesca HOM05D000104 ORTHO05D006385 1.3e-07 59.3 46 63.0
FAN16G3696 Fragaria x ananassa HOM05D000104 ORTHO05D006385 1.3e-07 59.3 46 63.0
FAN21G0261 Fragaria x ananassa HOM05D000104 ORTHO05D006385 1.3e-07 59.3 46 63.0
FAN25G1943 Fragaria x ananassa HOM05D000104 ORTHO05D006385 1.3e-07 59.3 46 63.0
MBI18_g05699_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006385 1.3e-07 59.3 46 58.7
Glyma.05G131500 Glycine max HOM05D000104 ORTHO05D006385 2.2e-07 58.5 46 60.9
HanXRQChr12g0381521 Helianthus annuus HOM05D000104 ORTHO05D006385 2.2e-07 58.5 46 58.7
THA.LOC104811657 Tarenaya hassleriana HOM05D000104 ORTHO05D006385 2.2e-07 58.5 45 64.4
Nitab4.5_0006786g0010 Nicotiana tabacum HOM05D000104 ORTHO05D006385 3.7e-07 57.8 47 59.6
Peaxi162Scf00199g00049 Petunia axillaris HOM05D000104 ORTHO05D006385 3.7e-07 57.8 46 60.9
Lalb_Chr07g0188451 Lupinus albus HOM05D000104 ORTHO05D006385 6.3e-07 57.0 46 60.9
Sed0021696 Sechium edule HOM05D000104 ORTHO05D006385 6.3e-07 57.0 46 60.9
Medtr4g096930 Medicago truncatula HOM05D000104 ORTHO05D006385 1.1e-06 56.2 46 60.9
Solyc02g068560.3 Solanum lycopersicum HOM05D000104 ORTHO05D006385 1.1e-06 56.2 46 56.5
Sopen02g017710 Solanum pennellii HOM05D000104 ORTHO05D006385 1.1e-06 56.2 46 56.5
AT5G44800 Arabidopsis thaliana HOM05D000104 ORTHO05D006385 1.4e-06 55.8 45 60.0
CAN.G149.4 Capsicum annuum HOM05D000104 ORTHO05D006385 1.4e-06 55.8 46 58.7
CARHR178070 Cardamine hirsuta HOM05D000104 ORTHO05D006385 1.8e-06 55.5 44 61.4
AL8G14720 Arabidopsis lyrata HOM05D000104 ORTHO05D006385 3.1e-06 54.7 45 60.0
MSTRG.16362 Avicennia marina HOM05D000104 ORTHO05D006385 3.1e-06 54.7 46 60.9
CANSAT35G1593 Cannabis sativa HOM05D000104 ORTHO05D006385 3.1e-06 54.7 46 60.9
Glyma.08G086100 Glycine max HOM05D000104 ORTHO05D006385 3.1e-06 54.7 46 58.7
Lsat_1_v5_gn_4_139440 Lactuca sativa HOM05D000104 ORTHO05D006385 3.1e-06 54.7 46 58.7
Prupe.4G114900 Prunus persica HOM05D000104 ORTHO05D006385 3.1e-06 54.7 46 58.7
Sp2g09650 Schrenkiella parvula HOM05D000104 ORTHO05D006385 3.1e-06 54.7 45 57.8
VMungo0251G0392 Vigna mungo HOM05D000104 ORTHO05D006385 3.1e-06 54.7 46 56.5
Nn7g38207 Nelumbo nucifera HOM05D000104 ORTHO05D006385 4.1e-06 54.3 46 60.9
BcaC04g21814 Brassica carinata HOM05D000104 ORTHO05D006385 5.3e-06 53.9 45 57.8
A09p21350 Brassica napus HOM05D000104 ORTHO05D006385 5.3e-06 53.9 45 57.8
C09p27190 Brassica napus HOM05D000104 ORTHO05D006385 5.3e-06 53.9 45 57.8
BolC9t55600H Brassica oleracea HOM05D000104 ORTHO05D006385 5.3e-06 53.9 45 57.8
BraA09t37740Z Brassica rapa HOM05D000104 ORTHO05D006385 5.3e-06 53.9 45 57.8
Thhalv10000738m.g Eutrema salsugineum HOM05D000104 ORTHO05D006385 5.3e-06 53.9 45 60.0
BcaB07g30923 Brassica carinata HOM05D000104 ORTHO05D006385 9.0e-06 53.1 45 55.6
Hma1.2p1_0181F.1_g079940 Hydrangea macrophylla HOM05D000104 ORTHO05D028418 9.0e-06 53.1 42 66.7
Phvul.002G191300 Phaseolus vulgaris HOM05D000104 ORTHO05D006385 9.0e-06 53.1 46 56.5
Psat7g089160 Pisum sativum HOM05D000104 ORTHO05D006385 9.0e-06 53.1 44 59.1
TPR.G2937 Trifolium pratense HOM05D000104 ORTHO05D006385 9.0e-06 53.1 44 59.1


User provided reference genes

Program Settings