Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 3.7e-134 481.5 235 100.0
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 4.3e-58 228.8 170 73.5
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 7.4e-50 201.4 170 64.7
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 2.6e-47 193.0 179 57.5
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.0e-46 191.0 173 61.8
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 6.5e-46 188.3 175 58.9
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 1.1e-45 187.6 191 58.6
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 1.1e-45 187.6 182 55.5
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 1.9e-45 186.8 182 54.9
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 3.2e-45 186.0 195 55.4
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 5.5e-45 185.3 181 56.9
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 5.5e-45 185.3 184 56.5
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 9.4e-45 184.5 179 57.0
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 1.6e-44 183.7 176 58.5
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 2.1e-44 183.3 191 57.6
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 2.1e-44 183.3 181 55.8
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 3.6e-44 182.6 178 56.2
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 3.6e-44 182.6 181 54.7
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 6.1e-44 181.8 182 53.8
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 8.0e-44 181.4 182 53.8
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 8.0e-44 181.4 182 56.0
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 8.0e-44 181.4 182 56.0
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 1.0e-43 181.0 182 56.0
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.4e-43 180.6 172 59.3
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.4e-43 180.6 189 54.5
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.4e-43 180.6 182 56.0
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 2.3e-43 179.9 195 51.3
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 2.3e-43 179.9 182 53.3
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.3e-43 179.9 182 53.3
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 3.0e-43 179.5 182 54.4
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 4.0e-43 179.1 178 53.9
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 4.0e-43 179.1 194 54.1
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 4.0e-43 179.1 192 54.2
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 6.7e-43 178.3 182 56.6
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 1.1e-42 177.6 186 55.9
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 1.1e-42 177.6 167 60.5
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 1.5e-42 177.2 181 55.8
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.5e-42 177.2 195 51.8
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 1.5e-42 177.2 181 53.6
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 1.5e-42 177.2 179 52.5
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.0e-42 176.8 182 54.4
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.0e-42 176.8 219 48.4
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 2.6e-42 176.4 183 54.6
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 2.6e-42 176.4 189 53.4
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 3.3e-42 176.0 195 52.8
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 4.4e-42 175.6 196 51.5
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 4.4e-42 175.6 175 54.9
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 7.5e-42 174.9 195 52.3
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 7.5e-42 174.9 182 54.9
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 7.5e-42 174.9 181 53.6
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 2.8e-41 172.9 182 53.8
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 2.8e-41 172.9 185 54.1
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 3.7e-41 172.6 174 57.5
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 3.7e-41 172.6 175 53.7
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 3.7e-41 172.6 179 53.6
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 3.7e-41 172.6 195 53.3
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 4.8e-41 172.2 195 50.3
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 6.3e-41 171.8 195 51.3
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 6.3e-41 171.8 186 53.2
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 8.2e-41 171.4 195 51.3
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 1.1e-40 171.0 189 54.0
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 1.4e-40 170.6 194 51.0
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.4e-40 170.6 195 52.8
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.8e-40 170.2 179 52.5
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 2.4e-40 169.9 176 54.0
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 9.1e-40 167.9 195 50.3
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 9.1e-40 167.9 188 52.1
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 2.0e-39 166.8 201 47.8
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.0e-39 166.8 183 53.0
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 2.7e-39 166.4 195 49.2
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 3.5e-39 166.0 173 53.8
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 3.5e-39 166.0 173 53.8
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 4.5e-39 165.6 194 49.0
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 7.7e-39 164.9 181 52.5
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 1.3e-38 164.1 181 52.5
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 2.9e-38 162.9 178 50.6
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 3.8e-38 162.5 172 52.9
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 3.8e-38 162.5 195 49.2
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 5.0e-38 162.2 181 50.8
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 5.0e-38 162.2 181 50.8
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 6.5e-38 161.8 194 48.5
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 6.5e-38 161.8 173 52.6
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 1.1e-37 161.0 194 47.9
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 1.1e-37 161.0 181 50.8
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 1.5e-37 160.6 190 49.5
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.5e-37 160.6 191 48.7
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 2.5e-37 159.8 178 50.0
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 2.5e-37 159.8 178 50.0
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 3.2e-37 159.5 178 50.6
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 7.2e-37 158.3 173 53.2
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 7.2e-37 158.3 173 53.2
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 9.4e-37 157.9 183 50.8
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 1.6e-36 157.1 189 49.7
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 4.7e-36 155.6 175 52.0
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 4.7e-36 155.6 180 49.4
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 4.7e-36 155.6 189 48.7
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 4.7e-36 155.6 189 48.7
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 4.7e-36 155.6 189 48.7
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 4.7e-36 155.6 189 48.7
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 4.7e-36 155.6 180 48.9
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 6.1e-36 155.2 180 48.3
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 8.0e-36 154.8 194 47.4
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 1.4e-35 154.1 173 52.6
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.4e-35 154.1 190 47.9
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.4e-35 154.1 194 47.9
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.4e-35 154.1 194 47.9
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 2.3e-35 153.3 175 52.6
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 4.0e-35 152.5 189 47.6
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 5.2e-35 152.1 190 47.4
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 4.4e-34 149.1 175 49.1
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 4.4e-34 149.1 175 48.6
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 4.4e-34 149.1 175 49.7
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.2e-33 146.7 172 49.4
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 2.8e-33 146.4 170 50.6
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 2.0e-31 140.2 194 43.8
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.2e-30 136.7 69 95.7
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 5.5e-29 132.1 69 91.3
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 2.1e-28 130.2 82 80.5
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 8.0e-28 128.3 183 43.7
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.0e-27 126.3 176 46.6
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 4.0e-27 125.9 176 44.3
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 5.2e-27 125.6 189 41.3
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 5.4e-24 115.5 176 41.5
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 2.0e-23 113.6 175 41.1
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 1.1e-21 107.8 99 56.6
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 1.9e-21 107.1 110 51.8
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 3.6e-20 102.8 85 60.0
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 4.4e-18 95.9 133 41.4
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 9.8e-18 94.7 98 48.0
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 2.9e-17 93.2 51 86.3
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 1.1e-16 91.3 202 35.1
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.8e-16 90.5 172 36.0
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 3.2e-16 89.7 98 51.0
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 5.4e-16 89.0 134 42.5
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.6e-15 87.4 123 42.3
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.7e-14 84.0 71 60.6
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 2.5e-13 80.1 89 47.2
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 9.5e-13 78.2 46 78.3
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 4.7e-12 75.9 81 49.4
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 5.2e-11 72.4 64 56.2
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 6.8e-11 72.0 190 31.1
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.4e-08 63.5 168 28.6
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.4e-08 63.5 45 66.7
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 1.0e-06 58.2 51 49.0


User provided reference genes

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