Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031811 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 1.4e-283 979.2 559 100.0
Dinv19196 Davidia involucrata HOM05D002628 ORTHO05D002785 1.0e-177 627.5 591 67.7
Dinv12687 Davidia involucrata HOM05D002628 ORTHO05D002785 2.5e-173 612.8 591 69.2
CSS0050463 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 9.7e-173 610.9 563 74.4
Actinidia37601 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.3e-172 610.5 582 67.9
Actinidia09479 Actinidia chinensis HOM05D002628 ORTHO05D002785 7.4e-165 584.7 574 68.3
Actinidia23721 Actinidia chinensis HOM05D002628 ORTHO05D002785 2.8e-164 582.8 530 68.5
Cfa002577 Carpinus fangiana HOM05D002628 ORTHO05D002785 2.7e-138 496.5 586 58.9
Ciclev10018446m.g Citrus clementina HOM05D002628 ORTHO05D002785 6.6e-137 491.9 596 53.4
Thecc.01G224600 Theobroma cacao HOM05D002628 ORTHO05D002785 2.0e-133 480.3 603 56.9
Atru.chr5.2101 Acer truncatum HOM05D002628 ORTHO05D002785 2.7e-130 469.9 603 54.9
Duzib211G0579 Durio zibethinus HOM05D002628 ORTHO05D002785 1.0e-129 468.0 597 55.1
Rhsim01G0255500 Rhododendron simsii HOM05D002628 ORTHO05D002785 1.3e-129 467.6 576 59.2
TAR633G2086 Trochodendron aralioides HOM05D002628 ORTHO05D002785 9.5e-128 461.5 606 56.4
Prupe.8G201800 Prunus persica HOM05D002628 ORTHO05D002785 2.1e-127 460.3 609 53.0
MD05G1174400 Malus domestica HOM05D002628 ORTHO05D002785 1.8e-126 457.2 601 53.6
Manes.12G045400 Manihot esculenta HOM05D002628 ORTHO05D002785 4.0e-126 456.1 596 53.5
Potri.002G243350 Populus trichocarpa HOM05D002628 ORTHO05D002785 1.2e-125 454.5 599 51.9
QL09p053994 Quercus lobata HOM05D002628 ORTHO05D002785 1.2e-125 454.5 592 55.4
FvH4_2g18860 Fragaria vesca HOM05D002628 ORTHO05D002785 4.4e-125 452.6 595 52.9
Gohir.D11G144700 Gossypium hirsutum HOM05D002628 ORTHO05D002785 1.4e-123 447.6 593 54.3
Gorai.007G155000 Gossypium raimondii HOM05D002628 ORTHO05D002785 1.9e-123 447.2 593 53.8
Gohir.A11G137900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 2.4e-123 446.8 593 54.1
RcHm_v2.0_Chr6g0284671 Rosa chinensis HOM05D002628 ORTHO05D002785 2.4e-123 446.8 599 52.1
FAN24G2878 Fragaria x ananassa HOM05D002628 ORTHO05D002785 3.2e-123 446.4 596 52.7
MD10G1163500 Malus domestica HOM05D002628 ORTHO05D002785 9.5e-120 434.9 599 52.3
TWI75G1871 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 2.8e-119 433.3 600 52.2
CiPaw.03G148700 Carya illinoinensis HOM05D002628 ORTHO05D002785 1.5e-117 427.6 594 52.0
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 2.6e-117 426.8 513 54.0
Duzib133G0258 Durio zibethinus HOM05D002628 ORTHO05D002785 4.4e-117 426.0 598 53.7
Sabra14G0142700 Salix brachista HOM05D002628 ORTHO05D002785 4.4e-117 426.0 541 54.3
CANSAT01G2524 Cannabis sativa HOM05D002628 ORTHO05D002785 5.8e-117 425.6 528 53.4
Manes.13G047100 Manihot esculenta HOM05D002628 ORTHO05D002785 1.3e-116 424.5 589 52.0
TWI18G0012 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 2.2e-116 423.7 544 52.9
TWI36G1593 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 6.4e-116 422.2 604 50.7
TAR362G0009 Trochodendron aralioides HOM05D002628 ORTHO05D002785 5.4e-115 419.1 528 55.9
vmacro14750 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 9.2e-115 418.3 584 52.7
FAN27G0734 Fragaria x ananassa HOM05D002628 ORTHO05D002785 2.7e-114 416.8 595 48.7
CiPaw.04G105000 Carya illinoinensis HOM05D002628 ORTHO05D002785 1.0e-113 414.8 600 50.8
COL.COLO4_15677 Corchorus olitorius HOM05D002628 ORTHO05D002785 1.5e-112 411.0 606 51.2
Gorai.004G226000 Gossypium raimondii HOM05D002628 ORTHO05D002785 7.1e-107 392.1 596 52.5
Gohir.D08G212600 Gossypium hirsutum HOM05D002628 ORTHO05D002785 9.2e-107 391.7 601 51.6
Gohir.A08G194900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 1.6e-103 380.9 596 52.9
Potri.014G189900 Populus trichocarpa HOM05D002628 ORTHO05D002785 1.6e-103 380.9 540 49.8
PGSC0003DMG400017665 Solanum tuberosum HOM05D002628 ORTHO05D002785 1.2e-101 374.8 588 45.6
Duzib138G1695 Durio zibethinus HOM05D002628 ORTHO05D002785 1.5e-101 374.4 609 47.9
Gohir.A07G201100 Gossypium hirsutum HOM05D002628 ORTHO05D002785 7.6e-101 372.1 591 51.4
Glyma.03G081300 Glycine max HOM05D002628 ORTHO05D002785 9.9e-101 371.7 579 49.2
Gorai.001G233800 Gossypium raimondii HOM05D002628 ORTHO05D002785 7.1e-99 365.5 591 52.3
Gohir.D07G207400 Gossypium hirsutum HOM05D002628 ORTHO05D002785 2.7e-98 363.6 589 52.1
Aqoxy6G02008 Aquilegia oxysepala HOM05D002628 ORTHO05D002785 3.0e-97 360.1 536 49.4
MELO3C021029.2 Cucumis melo HOM05D002628 ORTHO05D002785 8.7e-97 358.6 585 44.3
Lalb_Chr19g0125651 Lupinus albus HOM05D002628 ORTHO05D002785 1.5e-96 357.8 590 46.6
Ca_26871_v3 Cicer arietinum L. HOM05D002628 ORTHO05D002785 1.6e-95 354.4 584 44.0
Phvul.008G126600 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 2.8e-95 353.6 595 44.5
Nn1g07877 Nelumbo nucifera HOM05D002628 ORTHO05D002785 6.2e-95 352.4 547 47.2
Sopen09g023690 Solanum pennellii HOM05D002628 ORTHO05D002785 8.1e-95 352.1 587 44.0
Solyc09g060080.4 Solanum lycopersicum HOM05D002628 ORTHO05D002785 1.8e-94 350.9 586 43.9
VMungo1383G0087 Vigna mungo HOM05D002628 ORTHO05D002785 9.0e-94 348.6 591 45.5
MSTRG.12779 Avicennia marina HOM05D002628 ORTHO05D002785 3.4e-93 346.7 582 46.9
vmacro02763 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 8.4e-92 342.0 491 48.9
arahy.Tifrunner.gnm1.ann1.23VDWQ Arachis hypogaea HOM05D002628 ORTHO05D002785 7.1e-91 339.0 596 45.3
Phvul.010G018800 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 1.6e-90 337.8 583 43.4
Lj3g0004121 Lotus japonicus HOM05D002628 ORTHO05D002785 4.6e-90 336.3 575 47.7
Glyma.08G352600 Glycine max HOM05D002628 ORTHO05D002785 5.1e-89 332.8 591 44.7
VMungo0331G0007 Vigna mungo HOM05D002628 ORTHO05D002785 6.6e-89 332.4 589 44.0
Medtr7g056603 Medicago truncatula HOM05D002628 ORTHO05D002785 8.7e-89 332.0 584 42.8
Lj1A87T37 Lonicera japonica HOM05D002628 ORTHO05D002785 7.3e-88 328.9 575 44.9
Nitab4.5_0003758g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 2.1e-87 327.4 578 46.2
arahy.Tifrunner.gnm1.ann1.82MK2E Arachis hypogaea HOM05D002628 ORTHO05D002785 1.1e-86 325.1 596 44.3
Glyma.18G169600 Glycine max HOM05D002628 ORTHO05D002785 4.5e-85 319.7 586 44.2
Nitab4.5_0000045g0240 Nicotiana tabacum HOM05D002628 ORTHO05D002785 7.6e-85 318.9 566 45.6
TPR.G31107 Trifolium pratense HOM05D002628 ORTHO05D002785 8.4e-84 315.5 587 44.3
Actinidia39759 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.9e-83 314.3 390 59.5
DCAR_012651 Daucus carota HOM05D002628 ORTHO05D002785 2.4e-83 313.9 502 47.0
AUR62001094 Chenopodium quinoa HOM05D002628 ORTHO05D002785 1.0e-81 308.5 589 42.6
Actinidia39763 Actinidia chinensis HOM05D002628 ORTHO05D002785 3.9e-81 306.6 406 55.4
Lalb_Chr03g0041701 Lupinus albus HOM05D002628 ORTHO05D002785 6.7e-81 305.8 572 43.9
EL10Ac7g17849 Beta vulgaris HOM05D002628 ORTHO05D002785 4.8e-79 299.7 588 43.0
Lj1g0019543 Lotus japonicus HOM05D002628 ORTHO05D002785 6.2e-79 299.3 584 42.3
Lalb_Chr01g0022291 Lupinus albus HOM05D002628 ORTHO05D002785 1.1e-78 298.5 585 42.7
Oeu004073.1 Olea europaea HOM05D002628 ORTHO05D002785 2.4e-78 297.4 580 45.3
SalBow3G0995 Salvia bowleyana HOM05D002628 ORTHO05D002785 6.9e-78 295.8 583 44.3
Peaxi162Scf00517g00636 Petunia axillaris HOM05D002628 ORTHO05D002785 4.5e-77 293.1 528 42.0
Oeu022247.1 Olea europaea HOM05D002628 ORTHO05D002785 1.4e-75 288.1 533 43.7
Sc05g0002110 Simmondsia chinensis HOM05D002628 ORTHO05D002785 4.2e-75 286.6 543 43.8
CsaV3_7G026060 Cucumis sativus L. HOM05D002628 ORTHO05D002785 3.5e-74 283.5 515 42.7
Hund05562 Selenicereus undatus HOM05D002628 ORTHO05D002785 3.5e-74 283.5 531 41.2
Hund18389 Selenicereus undatus HOM05D002628 ORTHO05D002785 1.0e-73 282.0 536 44.2
Lj2C1130G3 Lonicera japonica HOM05D002628 ORTHO05D002785 1.3e-71 275.0 590 42.5
MSTRG.18000 Avicennia marina HOM05D002628 ORTHO05D002785 1.6e-71 274.6 589 42.1
Actinidia28152 Actinidia chinensis HOM05D002628 ORTHO05D002785 8.2e-71 272.3 431 52.2
Sopen06g034780 Solanum pennellii HOM05D002628 ORTHO05D002785 9.0e-70 268.9 581 38.6
AUR62008919 Chenopodium quinoa HOM05D002628 ORTHO05D002785 5.8e-69 266.2 586 38.9
CAN.G771.81 Capsicum annuum HOM05D002628 ORTHO05D002785 1.7e-68 264.6 581 39.1
Sed0004451 Sechium edule HOM05D002628 ORTHO05D002785 2.9e-68 263.8 424 47.4
SalBow6G2694 Salvia bowleyana HOM05D002628 ORTHO05D002785 6.5e-68 262.7 489 41.5
PSO675G2169 Papaver somniferum HOM05D002628 ORTHO05D002785 1.1e-67 261.9 606 43.6
Gorai.001G187100 Gossypium raimondii HOM05D002628 ORTHO05D002785 1.9e-67 261.2 535 43.2
Sed0013250 Sechium edule HOM05D002628 ORTHO05D002785 2.5e-67 260.8 580 37.8
Nitab4.5_0002223g0030 Nicotiana tabacum HOM05D002628 ORTHO05D002785 2.7e-66 257.3 576 39.6
Solyc06g083420.3 Solanum lycopersicum HOM05D002628 ORTHO05D002785 1.1e-64 251.9 572 37.1
Psat3g145600 Pisum sativum HOM05D002628 ORTHO05D002785 9.7e-64 248.8 584 36.8
Glyma.16G093800 Glycine max HOM05D002628 ORTHO05D002785 1.6e-63 248.1 355 49.6
Nitab4.5_0001564g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 2.2e-63 247.7 577 40.4
Rhsim13G0045600 Rhododendron simsii HOM05D002628 ORTHO05D002785 2.8e-63 247.3 462 43.7
GSVIVG01028685001 Vitis vinifera HOM05D002628 ORTHO05D002785 4.8e-63 246.5 428 44.4
PGR083G0125 Punica granatum HOM05D002628 ORTHO05D002785 8.2e-63 245.7 599 41.4
Migut.N00620 Erythranthe guttata HOM05D002628 ORTHO05D002785 3.4e-61 240.4 572 40.6
Gohir.D07G163200 Gossypium hirsutum HOM05D002628 ORTHO05D002785 3.4e-61 240.4 527 41.6
Carub.0003s2528 Capsella rubella HOM05D002628 ORTHO05D002785 4.2e-59 233.4 500 38.6
Carub.0003s2526 Capsella rubella HOM05D002628 ORTHO05D002785 9.4e-59 232.3 500 38.6
DCAR_018575 Daucus carota HOM05D002628 ORTHO05D002785 1.6e-58 231.5 547 37.7
Aa31LG8G11310 Aethionema arabicum HOM05D002628 ORTHO05D002785 1.8e-57 228.0 534 40.1
CARHR218580 Cardamine hirsuta HOM05D002628 ORTHO05D002785 3.0e-57 227.3 528 38.3
Eucgr.H00795 Eucalyptus grandis HOM05D002628 ORTHO05D002785 5.1e-57 226.5 530 37.4
Haze_24810 Corylus avellana HOM05D002628 ORTHO05D002785 6.7e-57 226.1 526 36.3
Ah.15g093990 Amaranthus hybridus HOM05D002628 ORTHO05D002785 3.3e-56 223.8 461 41.6
CAN.G15.8 Capsicum annuum HOM05D002628 ORTHO05D002785 2.8e-55 220.7 373 45.0
Aa31LG9G4800 Aethionema arabicum HOM05D002628 ORTHO05D002785 6.3e-55 219.5 504 39.9
SalBow6G7039 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.4e-54 218.4 496 37.5
AT3G24870 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 4.1e-54 216.9 493 38.3
AT3G24880 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 2.0e-53 214.5 493 37.9
Gohir.A07G156950 Gossypium hirsutum HOM05D002628 ORTHO05D002785 8.5e-52 209.1 355 46.8
AL9U11010 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 1.1e-51 208.8 519 37.6
Cpa.g.sc8.144 Carica papaya HOM05D002628 ORTHO05D002785 1.2e-50 205.3 285 55.1
AL3G40640 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 4.7e-50 203.4 516 37.2
CARHR101290 Cardamine hirsuta HOM05D002628 ORTHO05D002785 1.8e-49 201.4 501 39.3
Migut.D02520 Erythranthe guttata HOM05D002628 ORTHO05D002785 5.1e-49 199.9 576 41.1
DCAR_000525 Daucus carota HOM05D002628 ORTHO05D002785 6.7e-49 199.5 504 37.1
BcaC06g35765 Brassica carinata HOM05D002628 ORTHO05D002785 8.8e-49 199.1 493 39.4
Sp3g22600 Schrenkiella parvula HOM05D002628 ORTHO05D002785 2.6e-48 197.6 527 38.7
SpUn0027_0080 Schrenkiella parvula HOM05D002628 ORTHO05D002785 2.6e-48 197.6 527 38.7
Oeu023092.1 Olea europaea HOM05D002628 ORTHO05D002785 9.7e-48 195.7 429 41.3
Thhalv10002368m.g Eutrema salsugineum HOM05D002628 ORTHO05D002785 2.2e-47 194.5 521 37.8
BcaB06g26704 Brassica carinata HOM05D002628 ORTHO05D002785 4.1e-46 190.3 488 38.9
BraA03t13528Z Brassica rapa HOM05D002628 ORTHO05D002785 1.2e-45 188.7 490 39.2
A03p43970 Brassica napus HOM05D002628 ORTHO05D002785 2.0e-45 188.0 469 39.2
C07p11110 Brassica napus HOM05D002628 ORTHO05D002785 1.0e-44 185.7 497 38.6
Eucgr.K02162 Eucalyptus grandis HOM05D002628 ORTHO05D002785 4.2e-43 180.3 581 36.8
BolC7t41583H Brassica oleracea HOM05D002628 ORTHO05D002785 7.2e-43 179.5 500 38.0
THA.LOC104821651 Tarenaya hassleriana HOM05D002628 ORTHO05D002785 2.0e-40 171.4 522 36.6
BraA07t28522Z Brassica rapa HOM05D002628 ORTHO05D002785 9.7e-40 169.1 487 37.6
A07p07330 Brassica napus HOM05D002628 ORTHO05D002785 2.2e-39 167.9 487 37.6
Hma1.2p1_0226F.1_g095630 Hydrangea macrophylla HOM05D002628 ORTHO05D002785 4.5e-37 160.2 212 54.7
BolC3t17718H Brassica oleracea HOM05D002628 ORTHO05D002785 1.3e-36 158.7 471 36.1
C03p54320 Brassica napus HOM05D002628 ORTHO05D002785 5.0e-36 156.8 450 36.0
BcaC01g03251 Brassica carinata HOM05D002628 ORTHO05D002785 1.1e-35 155.6 450 35.8
Psat0s1614g0080 Pisum sativum HOM05D002628 ORTHO05D002785 1.1e-35 155.6 258 45.3
BcaB03g16110 Brassica carinata HOM05D002628 ORTHO05D002785 2.7e-34 151.0 505 34.3
SHI31150 Sapria himalayana HOM05D002628 ORTHO05D002785 3.6e-34 150.6 532 35.5
HPP92_000545 Vanilla planifolia HOM05D002628 ORTHO05D002785 3.0e-33 147.5 562 32.6
ECA236G2127 Erigeron canadensis HOM05D002628 ORTHO05D002785 8.8e-33 146.0 506 34.4
BcaB08g34428 Brassica carinata HOM05D002628 ORTHO05D002785 1.1e-30 139.0 500 35.6
Actinidia39757 Actinidia chinensis HOM05D002628 ORTHO05D002785 2.9e-28 131.0 153 55.6
Zm00001eb160310 Zea mays HOM05D002628 ORTHO05D002785 6.5e-28 129.8 507 34.3
Cc01_g16950 Coffea canephora HOM05D002628 ORTHO05D002785 8.5e-28 129.4 162 52.5
SGA_v2.0_scaffold3G01640 Striga asiatica HOM05D002628 ORTHO05D002785 8.5e-28 129.4 508 37.0
Zm00001eb160300 Zea mays HOM05D002628 ORTHO05D002785 1.5e-27 128.6 508 33.9
BcaC02g09445 Brassica carinata HOM05D002628 ORTHO05D002785 2.5e-27 127.9 461 32.3
C04p42820 Brassica napus HOM05D002628 ORTHO05D002785 7.2e-27 126.3 461 32.1
CDE07G1586 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 3.6e-26 124.0 481 32.6
A04p08930 Brassica napus HOM05D002628 ORTHO05D002785 8.0e-26 122.9 463 32.4
BolC4t25848H Brassica oleracea HOM05D002628 ORTHO05D002785 8.0e-26 122.9 460 32.6
unitig_46.g18239 Utricularia gibba HOM05D002628 ORTHO05D002785 2.4e-22 111.3 380 33.4
CDE04G0039 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 5.9e-21 106.7 462 31.6
Gohir.A07G157100 Gossypium hirsutum HOM05D002628 ORTHO05D002785 7.7e-21 106.3 178 45.5
Glyma.18G167833 Glycine max HOM05D002628 ORTHO05D002785 1.7e-20 105.1 201 39.8
HPP92_002818 Vanilla planifolia HOM05D002628 ORTHO05D002785 5.5e-19 100.1 521 29.8
unitig_37.g12887 Utricularia gibba HOM05D002628 ORTHO05D002785 7.2e-19 99.8 345 34.5
ECA248G1308 Erigeron canadensis HOM05D002628 ORTHO05D002785 3.6e-18 97.4 411 35.0
BraA04t16589Z Brassica rapa HOM05D002628 ORTHO05D002785 7.5e-16 89.7 350 32.9
Lsat_1_v5_gn_5_180401 Lactuca sativa HOM05D002628 ORTHO05D002785 1.7e-15 88.6 196 42.3
SGA_v2.0_scaffold6G03236 Striga asiatica HOM05D002628 ORTHO05D002785 4.9e-15 87.0 385 36.4
unitig_736.g22339 Utricularia gibba HOM05D002628 ORTHO05D002785 7.0e-14 83.2 202 41.1
Lsat_1_v5_gn_8_89820 Lactuca sativa HOM05D002628 ORTHO05D002785 6.6e-12 76.6 199 39.2
CAN.G15.7 Capsicum annuum HOM05D002628 ORTHO05D002785 4.7e-10 70.5 147 40.1
HanXRQChr01g0015181 Helianthus annuus HOM05D002628 ORTHO05D002785 7.5e-08 63.2 404 29.0
Cpa.g.sc8.145 Carica papaya HOM05D002628 ORTHO05D002785 2.9e-07 61.2 120 51.7
Psat0s664g0040 Pisum sativum HOM05D002628 ORTHO05D002785 8.3e-07 59.7 151 42.4
HanXRQChr04g0108091 Helianthus annuus HOM05D002628 ORTHO05D002785 1.1e-06 59.3 499 28.9


User provided reference genes

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