Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031157 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 3.8e-246 854.4 426 100.0
CSS0011372 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 6.0e-223 777.3 424 93.4
CSS0030567 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 1.1e-205 719.9 374 95.7
Rhsim06G0230400 Rhododendron simsii HOM05D001724 ORTHO05D002973 1.1e-168 597.0 433 70.7
vmacro11595 Vaccinium macrocarpon HOM05D001724 ORTHO05D002973 2.3e-166 589.3 483 64.8
Actinidia04999 Actinidia chinensis HOM05D001724 ORTHO05D002973 9.7e-165 583.9 432 71.3
Dinv10340 Davidia involucrata HOM05D001724 ORTHO05D002973 4.5e-162 575.1 428 70.1
Lj1A891G67 Lonicera japonica HOM05D001724 ORTHO05D002973 6.3e-156 554.7 433 66.7
TAR629G2285 Trochodendron aralioides HOM05D001724 ORTHO05D002973 1.4e-144 516.9 449 61.7
GSVIVG01014694001 Vitis vinifera HOM05D001724 ORTHO05D002973 4.7e-143 511.9 444 61.3
QL08p003988 Quercus lobata HOM05D001724 ORTHO05D002973 1.5e-141 506.9 422 63.0
MD11G1030900 Malus domestica HOM05D001724 ORTHO05D002973 1.3e-140 503.8 408 63.7
Prupe.6G024200 Prunus persica HOM05D001724 ORTHO05D002973 4.8e-140 501.9 410 62.4
TWI39G0509 Tripterygium wilfordii HOM05D001724 ORTHO05D002973 8.2e-140 501.1 425 61.9
Atru.chr2.3696 Acer truncatum HOM05D001724 ORTHO05D002973 1.1e-139 500.7 415 63.1
Ciclev10007611m.g Citrus clementina HOM05D001724 ORTHO05D002973 9.1e-139 497.7 420 60.7
Manes.03G141900 Manihot esculenta HOM05D001724 ORTHO05D002973 1.2e-138 497.3 433 61.2
QL08p003981 Quercus lobata HOM05D001724 ORTHO05D002973 2.6e-138 496.1 434 60.1
Cfa020185 Carpinus fangiana HOM05D001724 ORTHO05D007284 1.0e-137 494.2 429 60.8
Haze_09833 Corylus avellana HOM05D001724 ORTHO05D002973 6.5e-137 491.5 438 60.3
COL.COLO4_09841 Corchorus olitorius HOM05D001724 ORTHO05D002973 3.2e-136 489.2 432 60.6
Solyc07g065620.4 Solanum lycopersicum HOM05D001724 ORTHO05D002973 4.2e-136 488.8 434 59.2
DCAR_017078 Daucus carota HOM05D001724 ORTHO05D002973 5.5e-136 488.4 431 60.1
Cc05_g14990 Coffea canephora HOM05D001724 ORTHO05D002973 2.1e-135 486.5 392 65.6
CAN.G623.15 Capsicum annuum HOM05D001724 ORTHO05D002973 6.7e-134 481.5 435 57.9
Sopen07g033830 Solanum pennellii HOM05D001724 ORTHO05D002973 6.7e-134 481.5 423 58.9
FAN21G0081 Fragaria x ananassa HOM05D001724 ORTHO05D002973 8.8e-134 481.1 414 60.1
Gohir.D01G062100 Gossypium hirsutum HOM05D001724 ORTHO05D002973 1.5e-133 480.3 407 61.9
PGSC0003DMG400022169 Solanum tuberosum HOM05D001724 ORTHO05D002973 4.4e-133 478.8 387 63.3
Gorai.002G100700 Gossypium raimondii HOM05D001724 ORTHO05D002973 7.5e-133 478.0 407 61.7
FvH4_3g42970 Fragaria vesca HOM05D001724 ORTHO05D002973 1.3e-132 477.2 414 59.7
Gohir.A01G091900 Gossypium hirsutum HOM05D001724 ORTHO05D002973 1.3e-132 477.2 439 58.1
FAN25G1954 Fragaria x ananassa HOM05D001724 ORTHO05D002973 1.2e-130 470.7 414 59.4
Nitab4.5_0002736g0010 Nicotiana tabacum HOM05D001724 ORTHO05D002973 1.2e-130 470.7 438 57.1
Nitab4.5_0007415g0040 Nicotiana tabacum HOM05D001724 ORTHO05D002973 2.7e-130 469.5 432 57.2
Nn3g20983 Nelumbo nucifera HOM05D001724 ORTHO05D002973 3.5e-130 469.2 412 58.7
Peaxi162Scf00139g01315 Petunia axillaris HOM05D001724 ORTHO05D002973 1.0e-129 467.6 426 57.3
RcHm_v2.0_Chr5g0077021 Rosa chinensis HOM05D001724 ORTHO05D002973 1.7e-129 466.8 416 59.6
CANSAT11G0804 Cannabis sativa HOM05D001724 ORTHO05D002973 1.1e-128 464.2 432 56.0
Lalb_Chr15g0082171 Lupinus albus HOM05D001724 ORTHO05D002973 2.7e-127 459.5 422 54.7
FAN16G1447 Fragaria x ananassa HOM05D001724 ORTHO05D002973 6.1e-127 458.4 414 57.7
Aqoxy1G04266 Aquilegia oxysepala HOM05D001724 ORTHO05D002973 8.0e-127 458.0 429 55.7
Sc16g0008120 Simmondsia chinensis HOM05D001724 ORTHO05D002973 5.2e-126 455.3 418 57.4
MSTRG.13022 Avicennia marina HOM05D001724 ORTHO05D002973 7.5e-125 451.4 392 59.4
arahy.Tifrunner.gnm1.ann1.IH99E4 Arachis hypogaea HOM05D001724 ORTHO05D002973 1.1e-123 447.6 412 55.6
Hund20648 Selenicereus undatus HOM05D001724 ORTHO05D002973 1.4e-123 447.2 389 59.9
arahy.Tifrunner.gnm1.ann1.I0JGGQ Arachis hypogaea HOM05D001724 ORTHO05D002973 2.4e-123 446.4 412 55.6
Oeu049405.1 Olea europaea HOM05D001724 ORTHO05D002973 5.4e-123 445.3 400 59.2
Sabra16G0241500 Salix brachista HOM05D001724 ORTHO05D002973 5.4e-123 445.3 436 54.4
Glyma.18G076100 Glycine max HOM05D001724 ORTHO05D002973 7.0e-123 444.9 413 54.7
PGR083G1098 Punica granatum HOM05D001724 ORTHO05D002973 9.1e-123 444.5 418 56.9
TPR.G24133 Trifolium pratense HOM05D001724 ORTHO05D002973 9.1e-123 444.5 419 54.9
FAN11G2634 Fragaria x ananassa HOM05D001724 ORTHO05D002973 2.7e-122 443.0 408 57.8
VMungo0540G2248 Vigna mungo HOM05D001724 ORTHO05D002973 2.7e-122 443.0 414 54.8
Phvul.006G058000 Phaseolus vulgaris HOM05D001724 ORTHO05D002973 3.5e-122 442.6 440 53.4
ClCG10G004430 Citrullus lanatus HOM05D001724 ORTHO05D002973 5.9e-122 441.8 429 55.2
Lj6g0025052 Lotus japonicus HOM05D001724 ORTHO05D002973 3.8e-121 439.1 422 53.3
Eucgr.F02044 Eucalyptus grandis HOM05D001724 ORTHO05D002973 5.0e-121 438.7 390 57.4
Glyma.08G330300 Glycine max HOM05D001724 ORTHO05D002973 2.1e-119 433.3 421 54.4
Thhalv10011283m.g Eutrema salsugineum HOM05D001724 ORTHO05D002973 1.4e-118 430.6 413 53.5
Cpa.g.sc12.117 Carica papaya HOM05D001724 ORTHO05D002973 1.8e-118 430.3 354 63.6
Ca_26568_v3 Cicer arietinum L. HOM05D001724 ORTHO05D002973 3.0e-118 429.5 391 58.1
Sp1g41470 Schrenkiella parvula HOM05D001724 ORTHO05D002973 3.0e-118 429.5 415 54.7
Sed0006389 Sechium edule HOM05D001724 ORTHO05D002973 3.0e-118 429.5 442 51.6
HanXRQChr11g0334101 Helianthus annuus HOM05D001724 ORTHO05D002973 5.2e-118 428.7 408 59.1
Carub.0001s4445 Capsella rubella HOM05D001724 ORTHO05D002973 6.8e-118 428.3 411 54.0
Aa31LG10G320 Aethionema arabicum HOM05D001724 ORTHO05D002973 1.5e-117 427.2 417 53.2
PSO210G1056 Papaver somniferum HOM05D001724 ORTHO05D002973 1.5e-117 427.2 384 57.3
AL1G64000 Arabidopsis lyrata HOM05D001724 ORTHO05D002973 2.0e-117 426.8 384 55.7
Migut.H01753 Erythranthe guttata HOM05D001724 ORTHO05D002973 3.4e-117 426.0 385 59.5
THA.LOC104822731 Tarenaya hassleriana HOM05D001724 ORTHO05D002973 3.4e-117 426.0 390 57.9
BcaNung06014 Brassica carinata HOM05D001724 ORTHO05D002973 4.4e-117 425.6 384 55.5
AT1G55870 Arabidopsis thaliana HOM05D001724 ORTHO05D002973 7.5e-117 424.9 411 52.8
Ah.06g181460 Amaranthus hybridus HOM05D001724 ORTHO05D002973 3.7e-116 422.5 422 55.7
Thecc.07G012700 Theobroma cacao HOM05D001724 ORTHO05D002973 2.4e-115 419.9 432 53.9
Psat5g167400 Pisum sativum HOM05D001724 ORTHO05D002973 9.2e-115 417.9 390 55.4
Lsat_1_v5_gn_7_114340 Lactuca sativa HOM05D001724 ORTHO05D002973 1.6e-114 417.2 390 59.0
CARHR045570 Cardamine hirsuta HOM05D001724 ORTHO05D002973 3.5e-114 416.0 384 55.2
C06p10790 Brassica napus HOM05D001724 ORTHO05D002973 7.8e-114 414.8 384 55.7
BcaC08g43659 Brassica carinata HOM05D001724 ORTHO05D002973 1.0e-113 414.5 385 55.6
BolC6t36163H Brassica oleracea HOM05D001724 ORTHO05D002973 1.0e-113 414.5 385 55.6
BraSC56t46398Z Brassica rapa HOM05D001724 ORTHO05D002973 1.7e-113 413.7 385 55.6
ECA236G0853 Erigeron canadensis HOM05D001724 ORTHO05D002973 5.0e-113 412.1 416 54.3
MD03G1026800 Malus domestica HOM05D001724 ORTHO05D002973 5.0e-113 412.1 335 63.0
BcaB02g10794 Brassica carinata HOM05D001724 ORTHO05D002973 8.6e-113 411.4 404 53.7
EL10Ac4g07558 Beta vulgaris HOM05D001724 ORTHO05D002973 3.3e-112 409.5 389 56.0
AUR62017111 Chenopodium quinoa HOM05D001724 ORTHO05D002973 7.3e-112 408.3 386 55.4
AUR62036464 Chenopodium quinoa HOM05D001724 ORTHO05D002973 2.1e-111 406.8 386 55.2
HPP92_018203 Vanilla planifolia HOM05D001724 ORTHO05D002973 1.8e-110 403.7 404 52.2
SGA_v2.0_scaffold8G04414 Striga asiatica HOM05D001724 ORTHO05D002973 6.4e-108 395.2 378 53.4
ATR0751G261 Amborella trichopoda HOM05D001724 ORTHO05D002973 1.1e-107 394.4 389 52.2
CsaV3_3G004220 Cucumis sativus L. HOM05D001724 ORTHO05D002973 3.2e-107 392.9 422 50.7
Potri.001G368401 Populus trichocarpa HOM05D001724 ORTHO05D002973 4.1e-107 392.5 350 60.6
MELO3C014116.2 Cucumis melo HOM05D001724 ORTHO05D002973 5.0e-105 385.6 398 53.3
CDE10G0672 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 3.7e-100 369.4 430 47.2
SHI26518 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-93 347.8 352 52.6
Zm00001eb424550 Zea mays HOM05D001724 ORTHO05D002973 7.3e-80 302.0 390 43.3
Medtr3g460830 Medicago truncatula HOM05D001724 ORTHO05D002973 1.3e-76 291.2 240 62.1
MBI15_g39785_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000157 2.3e-73 280.4 399 42.1
unitig_744.g24042 Utricularia gibba HOM05D001724 ORTHO05D002973 2.8e-71 273.5 380 42.4
CDE10G0173 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 1.9e-56 224.2 204 51.0
Pp3c6_1870 Physcomitrium patens HOM05D001724 ORTHO05D002973 3.3e-40 170.2 405 31.1
SMO266G0093 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 1.3e-36 158.3 409 30.6
Mapoly0076s0056 Marchantia polymorpha HOM05D001724 ORTHO05D002973 7.9e-34 149.1 450 28.7
PGSC0003DMG400041007 Solanum tuberosum HOM05D001724 ORTHO05D002973 2.0e-32 144.4 165 50.9
CBR_g84872 Chara braunii HOM05D001724 ORTHO05D002973 9.7e-32 142.1 476 26.3
SMO117G0265 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 2.2e-28 131.0 385 26.5
FvH4_3g43120 Fragaria vesca HOM05D001724 ORTHO05D002973 4.4e-24 116.7 128 50.0
BcaC08g44223 Brassica carinata HOM05D001724 ORTHO05D002973 1.7e-20 104.8 129 45.0
BcaB05g23790 Brassica carinata HOM05D000371 ORTHO05D002973 3.2e-19 100.5 108 47.2
Hma1.2p1_1094F.1_g256485 Hydrangea macrophylla HOM05D001724 ORTHO05D002973 3.1e-14 84.0 79 57.0
MSTRG.12750 Avicennia marina HOM05D001724 ORTHO05D002973 5.4e-14 83.2 406 24.9
DCAR_018616 Daucus carota HOM05D001724 ORTHO05D002973 7.0e-14 82.8 371 25.3
Lsat_1_v5_gn_8_97601 Lactuca sativa HOM05D001724 ORTHO05D002973 4.5e-13 80.1 388 23.7
HanXRQChr10g0299661 Helianthus annuus HOM05D001724 ORTHO05D002973 5.9e-13 79.7 425 24.9
Cc08_g03940 Coffea canephora HOM05D001724 ORTHO05D002973 1.2e-10 72.0 385 24.2
Aqoxy2G04088 Aquilegia oxysepala HOM05D001724 ORTHO05D002973 2.7e-10 70.9 358 23.7
CsaV3_7G027140 Cucumis sativus L. HOM05D001724 ORTHO05D002973 3.6e-10 70.5 371 25.1
TWI18G1201 Tripterygium wilfordii HOM05D001724 ORTHO05D002973 4.7e-10 70.1 377 22.5
Phvul.008G135000 Phaseolus vulgaris HOM05D001724 ORTHO05D002973 8.0e-10 69.3 368 22.8
CANSAT01G3027 Cannabis sativa HOM05D001724 ORTHO05D002973 4.0e-09 67.0 365 23.6
CiPaw.13G058600 Carya illinoinensis HOM05D001724 ORTHO05D002973 4.0e-09 67.0 385 23.1
Rhsim13G0053300 Rhododendron simsii HOM05D001724 ORTHO05D002973 4.0e-09 67.0 354 22.6
Sed0003315 Sechium edule HOM05D001724 ORTHO05D002973 8.8e-09 65.9 375 25.1
Sopen09g021770 Solanum pennellii HOM05D001724 ORTHO05D002973 8.8e-09 65.9 413 24.9
Glyma.08G343300 Glycine max HOM05D001724 ORTHO05D002973 1.5e-08 65.1 387 22.7
Prupe.8G189300 Prunus persica HOM05D001724 ORTHO05D002973 1.5e-08 65.1 349 23.5
PGSC0003DMG400028884 Solanum tuberosum HOM05D001724 ORTHO05D002973 5.7e-08 63.2 411 21.9
Actinidia27654 Actinidia chinensis HOM05D001724 ORTHO05D002973 7.5e-08 62.8 418 23.0
Actinidia30008 Actinidia chinensis HOM05D001724 ORTHO05D002973 7.5e-08 62.8 418 23.0
SGA_v2.0_scaffold77G25302 Striga asiatica HOM05D001724 ORTHO05D002973 9.8e-08 62.4 171 28.1
Lalb_Chr19g0126201 Lupinus albus HOM05D001724 ORTHO05D002973 1.3e-07 62.0 369 23.3
BolC6t36827H Brassica oleracea HOM05D001724 ORTHO05D002973 1.7e-07 61.6 70 45.7
vmacro02823 Vaccinium macrocarpon HOM05D001724 ORTHO05D002973 1.7e-07 61.6 418 22.5
Dinv10447 Davidia involucrata HOM05D001724 ORTHO05D002973 2.2e-07 61.2 410 24.1
Manes.13G055100 Manihot esculenta HOM05D001724 ORTHO05D002973 2.2e-07 61.2 382 22.3
ECA236G3973 Erigeron canadensis HOM05D001724 ORTHO05D002973 3.7e-07 60.5 120 35.0
Carub.0003s2575 Capsella rubella HOM05D001724 ORTHO05D002973 6.3e-07 59.7 389 22.9
Pp3c3_29310 Physcomitrium patens HOM05D001724 ORTHO05D002973 6.3e-07 59.7 214 26.2
arahy.Tifrunner.gnm1.ann1.WJPF93 Arachis hypogaea HOM05D001724 ORTHO05D002973 8.3e-07 59.3 389 22.1
Oeu057820.1 Olea europaea HOM05D001724 ORTHO05D002973 8.3e-07 59.3 117 35.9
AT3G25430 Arabidopsis thaliana HOM05D001724 ORTHO05D002973 1.1e-06 58.9 360 23.6
THA.LOC104808814 Tarenaya hassleriana HOM05D001724 ORTHO05D002973 2.4e-06 57.8 373 21.4
FAN16G1810 Fragaria x ananassa HOM05D001724 ORTHO05D010307 4.1e-06 57.0 75 44.0
ClCG09G007930 Citrullus lanatus HOM05D001724 ORTHO05D002973 5.4e-06 56.6 361 24.1
PSO017G2441 Papaver somniferum HOM05D001724 ORTHO05D002973 5.4e-06 56.6 132 31.1
VMungo1383G0073 Vigna mungo HOM05D001724 ORTHO05D002973 7.0e-06 56.2 142 25.4
PSO675G8141 Papaver somniferum HOM05D001724 ORTHO05D002973 9.1e-06 55.8 132 31.1
Psat3g151640 Pisum sativum HOM05D001724 ORTHO05D002973 9.1e-06 55.8 122 29.5


User provided reference genes

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