Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 2.6e-222 775.0 380 100.0
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 2.0e-185 652.5 380 83.2
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 8.6e-181 637.1 380 82.9
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 7.5e-177 624.0 380 82.4
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 5.2e-162 574.7 368 76.6
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 6.8e-162 574.3 505 61.8
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 5.8e-161 571.2 379 72.6
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 2.1e-158 562.8 381 73.2
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.9e-157 558.5 378 72.2
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 2.5e-156 555.8 377 70.6
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 4.7e-155 551.6 378 72.0
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.2e-153 547.0 368 71.7
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.6e-153 545.8 379 71.8
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 3.8e-152 542.0 377 70.6
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.0e-149 533.9 426 62.7
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.0e-149 533.9 380 70.8
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.8e-147 525.8 371 70.4
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.8e-146 523.1 367 71.7
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 5.2e-146 521.5 368 68.5
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.5e-145 520.0 370 71.1
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 5.8e-145 518.1 378 71.4
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.2e-144 516.2 376 67.3
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 2.9e-144 515.8 332 78.0
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.9e-144 515.8 376 67.6
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.8e-144 515.4 370 66.8
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 6.4e-144 514.6 370 69.7
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 6.4e-144 514.6 369 69.4
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.4e-143 513.5 355 70.1
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 1.9e-143 513.1 373 67.0
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 3.2e-143 512.3 450 59.8
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.2e-143 511.9 369 68.8
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 7.1e-143 511.1 371 69.8
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 9.3e-143 510.8 373 65.7
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 9.3e-143 510.8 373 65.7
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.5e-142 508.8 369 69.1
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.3e-141 506.9 372 66.1
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 3.0e-141 505.8 368 67.9
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 8.7e-141 504.2 368 68.5
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 2.5e-140 502.7 325 74.2
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 4.3e-140 501.9 367 67.6
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.6e-140 501.5 367 68.1
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 2.8e-139 499.2 369 66.4
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.1e-138 497.3 369 66.9
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 3.1e-138 495.7 370 65.9
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.5e-137 493.4 372 64.8
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 1.3e-136 490.3 375 64.3
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.7e-136 490.0 375 64.0
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 2.2e-136 489.6 372 66.4
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 4.9e-136 488.4 377 63.7
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.1e-135 487.3 372 64.5
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.4e-135 486.9 370 65.7
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 1.4e-135 486.9 373 65.4
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 4.2e-135 485.3 374 64.2
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 4.2e-135 485.3 444 55.9
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 7.1e-135 484.6 366 65.6
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.1e-134 483.0 372 65.9
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 7.9e-134 481.1 370 63.5
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.3e-133 480.3 371 65.0
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 3.0e-133 479.2 372 63.4
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 3.9e-133 478.8 371 64.7
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 8.7e-133 477.6 370 63.5
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.5e-132 476.9 369 64.8
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.6e-131 473.4 378 63.2
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 2.8e-131 472.6 370 65.9
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.1e-130 470.7 378 62.7
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 3.1e-130 469.2 372 63.7
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 5.3e-130 468.4 369 62.9
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 7.6e-129 464.5 378 62.2
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.3e-128 463.8 369 64.2
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.7e-128 463.4 377 63.7
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 2.4e-127 459.5 368 62.5
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 7.9e-126 454.5 382 60.5
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.8e-125 453.4 366 62.8
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 3.9e-125 452.2 368 61.4
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 5.1e-125 451.8 368 62.0
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 8.7e-125 451.1 368 62.0
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.1e-124 450.7 370 62.7
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 1.1e-124 450.7 322 68.9
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.9e-124 449.9 373 59.2
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 5.6e-124 448.4 369 61.5
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 9.6e-124 447.6 368 61.1
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 2.1e-123 446.4 374 60.2
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 3.7e-123 445.7 368 60.9
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.8e-122 443.4 369 60.2
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 2.4e-122 443.0 374 59.4
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 2.4e-122 443.0 374 59.4
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 1.2e-121 440.7 368 60.6
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.4e-121 439.1 371 59.3
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.8e-120 435.6 370 59.2
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 8.4e-120 434.5 374 59.6
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 7.1e-119 431.4 373 59.8
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.6e-118 430.3 374 59.9
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 2.1e-118 429.9 374 59.9
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.4e-114 417.2 296 67.6
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 4.1e-114 415.6 365 60.5
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 5.3e-114 415.2 264 77.3
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.7e-112 410.2 418 53.6
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.7e-112 410.2 360 56.7
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 6.5e-112 408.3 282 71.3
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 2.7e-110 402.9 377 55.7
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.4e-109 400.6 381 55.1
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 4.3e-108 395.6 366 59.0
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.4e-103 380.6 368 51.9
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 1.9e-103 380.2 332 58.7
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 7.2e-103 378.3 368 54.6
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.7e-99 367.1 397 49.1
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 8.2e-99 364.8 293 62.8
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 7.0e-90 335.1 289 60.2
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 7.0e-90 335.1 228 71.1
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 4.5e-89 332.4 360 51.7
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.0e-88 331.3 224 71.4
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.1e-86 323.6 434 42.2
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.2e-81 307.8 409 41.6
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.6e-78 297.4 389 42.4
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 4.7e-78 295.8 166 81.3
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 2.8e-75 286.6 233 64.8
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 4.4e-68 262.7 379 39.6
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 7.3e-63 245.4 144 80.6
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 4.7e-62 242.7 143 77.6
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 2.8e-54 216.9 260 46.9
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.8e-54 216.9 260 46.9
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 6.6e-48 195.7 208 51.9
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.1e-47 194.9 208 51.9
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 2.1e-41 174.1 184 55.4
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 2.8e-38 163.7 83 88.0
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 3.6e-38 163.3 138 51.4
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.4e-37 161.4 209 47.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 4.6e-33 146.4 122 65.6
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.4e-29 134.8 94 75.5
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.4e-28 130.2 149 51.7
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.7e-27 127.9 87 73.6
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.4e-21 108.2 122 50.0
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 5.4e-18 96.3 210 31.0


User provided reference genes

Program Settings