Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030641 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 1.1e-167 593.2 294 100.0
CSS0008403 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 3.3e-164 581.6 294 98.0
CSS0038195 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 7.2e-143 510.8 297 89.6
CSS0014062 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 3.0e-56 223.0 234 57.3
CSS0011583 Camellia sinensis var. sinensis HOM05D023931 ORTHO05D002571 9.6e-55 218.0 234 55.6
Prupe.6G159800 Prunus persica HOM05D000113 ORTHO05D002571 2.0e-12 77.4 46 84.8
COL.COLO4_22215 Corchorus olitorius HOM05D000113 ORTHO05D002571 2.6e-12 77.0 46 84.8
CSS0000469 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 3.5e-12 76.6 45 86.7
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 5.9e-12 75.9 45 86.7
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 5.9e-12 75.9 45 86.7
MD06G1200100 Malus domestica HOM05D000113 ORTHO05D002571 5.9e-12 75.9 46 82.6
MD07G1285300 Malus domestica HOM05D000113 ORTHO05D002571 5.9e-12 75.9 46 82.6
MD08G1042900 Malus domestica HOM05D000113 ORTHO05D002571 5.9e-12 75.9 46 82.6
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 5.9e-12 75.9 45 86.7
QL10p018828 Quercus lobata HOM05D000113 ORTHO05D002571 5.9e-12 75.9 49 81.6
Thecc.03G097900 Theobroma cacao HOM05D000113 ORTHO05D002571 5.9e-12 75.9 46 84.8
GSVIVG01010800001 Vitis vinifera HOM05D000432 ORTHO05D000320 5.9e-12 75.9 64 65.6
Duzib205G1857 Durio zibethinus HOM05D000113 ORTHO05D002571 1.0e-11 75.1 45 86.7
Potri.015G008700 Populus trichocarpa HOM05D000113 ORTHO05D002571 1.0e-11 75.1 45 84.4
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 1.0e-11 75.1 46 82.6
Sabra15G0050000 Salix brachista HOM05D000113 ORTHO05D002571 1.0e-11 75.1 45 84.4
Sabra15G0050100 Salix brachista HOM05D000113 ORTHO05D002571 1.0e-11 75.1 45 84.4
Sabra15G0050300 Salix brachista HOM05D000113 ORTHO05D002571 1.0e-11 75.1 45 84.4
Sabra15G0050400 Salix brachista HOM05D000113 ORTHO05D002571 1.0e-11 75.1 45 84.4
Sabra15G0070200 Salix brachista HOM05D000113 ORTHO05D002571 1.0e-11 75.1 45 84.4
Sabra15G0072600 Salix brachista HOM05D000113 ORTHO05D002571 1.0e-11 75.1 45 84.4
Actinidia19008 Actinidia chinensis HOM05D000113 ORTHO05D002571 1.3e-11 74.7 49 79.6
Cfa019308 Carpinus fangiana HOM05D000113 ORTHO05D002571 1.3e-11 74.7 49 79.6
Cc04_g15020 Coffea canephora HOM05D000113 ORTHO05D002571 1.3e-11 74.7 45 84.4
SalBow7G4123 Salvia bowleyana HOM05D000113 ORTHO05D002571 1.3e-11 74.7 49 79.6
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 1.7e-11 74.3 45 84.4
QL10p018794 Quercus lobata HOM05D000113 ORTHO05D002571 1.7e-11 74.3 45 80.0
QL93p0191_0033 Quercus lobata HOM05D000113 ORTHO05D002571 1.7e-11 74.3 45 80.0
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 2.2e-11 73.9 49 79.6
Actinidia35027 Actinidia chinensis HOM05D000113 ORTHO05D002571 3.8e-11 73.2 49 77.6
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 3.8e-11 73.2 45 82.2
arahy.Tifrunner.gnm1.ann1.U2PNLV Arachis hypogaea HOM05D000113 ORTHO05D002571 3.8e-11 73.2 45 82.2
Haze_02454 Corylus avellana HOM05D000113 ORTHO05D002571 3.8e-11 73.2 49 77.6
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 3.8e-11 73.2 45 82.2
SGA_v2.0_scaffold7G04034 Striga asiatica HOM05D000113 ORTHO05D002571 3.8e-11 73.2 45 84.4
Haze_07691 Corylus avellana HOM05D000113 ORTHO05D002571 5.0e-11 72.8 49 79.6
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 5.0e-11 72.8 68 61.8
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 5.0e-11 72.8 45 84.4
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 6.5e-11 72.4 45 80.0
Cfa004955 Carpinus fangiana HOM05D000113 ORTHO05D002571 6.5e-11 72.4 49 77.6
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 8.5e-11 72.0 49 75.5
CiPaw.11G050600 Carya illinoinensis HOM05D000113 ORTHO05D002571 1.1e-10 71.6 49 77.6
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 1.1e-10 71.6 45 80.0
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 1.5e-10 71.2 47 76.6
vmacro16510 Vaccinium macrocarpon HOM05D000113 ORTHO05D002571 1.5e-10 71.2 48 81.2
MELO3C017216.2 Cucumis melo HOM05D000113 ORTHO05D002571 1.9e-10 70.9 49 73.5
CsaV3_1G002800 Cucumis sativus L. HOM05D000113 ORTHO05D002571 1.9e-10 70.9 49 73.5
Lj5C105T19 Lonicera japonica HOM05D000113 ORTHO05D002571 2.5e-10 70.5 45 80.0
Rhsim12G0152100 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.5e-10 70.5 49 73.5
AUR62002552 Chenopodium quinoa HOM05D000113 ORTHO05D002571 3.2e-10 70.1 45 80.0
AUR62029967 Chenopodium quinoa HOM05D000113 ORTHO05D002571 3.2e-10 70.1 45 80.0
Hma1.2p1_0060F.1_g033270 Hydrangea macrophylla HOM05D000113 ORTHO05D002571 3.2e-10 70.1 45 80.0
Sabra15G0006800 Salix brachista HOM05D000113 ORTHO05D002571 3.2e-10 70.1 45 77.8
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 3.2e-10 70.1 46 78.3
EL10Ac3g06248 Beta vulgaris HOM05D000113 ORTHO05D002571 4.2e-10 69.7 45 80.0
Migut.D01678 Erythranthe guttata HOM05D000113 ORTHO05D002571 4.2e-10 69.7 58 67.2
Sc10g0009750 Simmondsia chinensis HOM05D000113 ORTHO05D002571 4.2e-10 69.7 45 80.0
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 5.5e-10 69.3 45 77.8
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 5.5e-10 69.3 49 73.5
Ca_26393_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 7.2e-10 68.9 45 77.8
Lalb_Chr13g0294241 Lupinus albus HOM05D000113 ORTHO05D002571 9.4e-10 68.6 47 76.6
Sed0024832 Sechium edule HOM05D000113 ORTHO05D002571 9.4e-10 68.6 58 62.1
Solyc03g115390.4 Solanum lycopersicum HOM05D000113 ORTHO05D002571 9.4e-10 68.6 45 77.8
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 9.4e-10 68.6 45 77.8
Eucgr.K02505 Eucalyptus grandis HOM05D000113 ORTHO05D002571 1.2e-09 68.2 60 61.7
Dinv22270 Davidia involucrata HOM05D000113 ORTHO05D002571 1.6e-09 67.8 41 80.5
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 1.6e-09 67.8 47 74.5
ATR0064G016 Amborella trichopoda HOM05D000113 ORTHO05D002571 2.1e-09 67.4 45 77.8
Ca_23233_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 2.1e-09 67.4 45 75.6
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 2.1e-09 67.4 41 82.9
Sed0009402 Sechium edule HOM05D000113 ORTHO05D002571 2.1e-09 67.4 49 71.4
DCAR_021511 Daucus carota HOM05D000113 ORTHO05D002571 2.7e-09 67.0 45 75.6
Rhsim06G0025800 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.7e-09 67.0 49 69.4
TWI73G0006 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 2.7e-09 67.0 64 59.4
THA.LOC104812747 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 4.7e-09 66.2 44 77.3
TWI81G1049 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 4.7e-09 66.2 49 69.4
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 6.1e-09 65.9 45 73.3
VMungo1127G1561 Vigna mungo HOM05D000113 ORTHO05D002571 6.1e-09 65.9 44 77.3
ECA232G2775 Erigeron canadensis HOM05D000113 ORTHO05D002571 8.0e-09 65.5 45 75.6
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 8.0e-09 65.5 41 82.9
Medtr1g010030 Medicago truncatula HOM05D000113 ORTHO05D002571 1.0e-08 65.1 47 72.3
Ca_13800_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 1.4e-08 64.7 47 70.2
Lsat_1_v5_gn_9_24861 Lactuca sativa HOM05D000113 ORTHO05D002571 1.4e-08 64.7 47 68.1
Hund09854 Selenicereus undatus HOM05D000113 ORTHO05D012125 1.4e-08 64.7 45 73.3
Atru.chr12.1785 Acer truncatum HOM05D000113 ORTHO05D002571 1.8e-08 64.3 45 68.9
Psat0s3790g0040 Pisum sativum HOM05D000113 ORTHO05D002571 2.3e-08 63.9 45 71.1
Thhalv10006650m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 4.0e-08 63.2 44 75.0
SHI27001 Sapria himalayana HOM05D000113 ORTHO05D002571 4.0e-08 63.2 59 61.0
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 4.0e-08 63.2 44 75.0
HanXRQChr09g0270171 Helianthus annuus HOM05D000113 ORTHO05D002571 5.2e-08 62.8 44 72.7
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 6.7e-08 62.4 44 75.0
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 6.7e-08 62.4 44 75.0
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 6.7e-08 62.4 44 75.0
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 6.7e-08 62.4 44 75.0
FvH4_5g14240 Fragaria vesca HOM05D000113 ORTHO05D002571 6.7e-08 62.4 43 74.4
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.7e-08 62.4 43 74.4
FAN18G0690 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.7e-08 62.4 43 74.4
RcHm_v2.0_Chr7g0182681 Rosa chinensis HOM05D000113 ORTHO05D002571 8.8e-08 62.0 43 74.4
BcaB06g29390 Brassica carinata HOM05D000113 ORTHO05D002571 1.2e-07 61.6 44 72.7
BcaC02g07104 Brassica carinata HOM05D000113 ORTHO05D002571 1.2e-07 61.6 44 72.7
Psat1g109600 Pisum sativum HOM05D000113 ORTHO05D002571 1.2e-07 61.6 45 68.9
TAR374G0746 Trochodendron aralioides HOM05D000113 ORTHO05D002571 1.2e-07 61.6 38 81.6
Aa31LG2G13460 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.5e-07 61.2 44 72.7
Migut.G00488 Erythranthe guttata HOM05D000113 ORTHO05D002571 1.5e-07 61.2 44 72.7
Actinidia38431 Actinidia chinensis HOM05D000742 ORTHO05D000924 2.0e-07 60.8 42 69.0
THA.LOC104812748 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 2.0e-07 60.8 44 70.5
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 2.6e-07 60.5 45 68.9
Atru.chr3.2014 Acer truncatum HOM05D000003 ORTHO05D000283 4.4e-07 59.7 78 35.9
RcHm_v2.0_Chr2g0092491 Rosa chinensis HOM05D000113 ORTHO05D002571 4.4e-07 59.7 46 63.0
Glyma.01G040900 Glycine max HOM05D000113 ORTHO05D002571 5.7e-07 59.3 41 73.2
Prupe.8G103900 Prunus persica HOM05D000113 ORTHO05D002571 5.7e-07 59.3 59 57.6
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 5.7e-07 59.3 49 67.3
BcaC05g27851 Brassica carinata HOM05D000113 ORTHO05D002571 7.5e-07 58.9 44 70.5
A05p24800 Brassica napus HOM05D000113 ORTHO05D002571 7.5e-07 58.9 44 70.5
C05p38490 Brassica napus HOM05D000113 ORTHO05D002571 7.5e-07 58.9 44 70.5
BolC5t32583H Brassica oleracea HOM05D000113 ORTHO05D002571 7.5e-07 58.9 44 70.5
BraA05t21363Z Brassica rapa HOM05D000113 ORTHO05D002571 7.5e-07 58.9 44 70.5
FvH4_1g06760 Fragaria vesca HOM05D000113 ORTHO05D002571 7.5e-07 58.9 46 63.0
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 9.7e-07 58.5 38 78.9
FAN23G0734 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.3e-06 58.2 46 63.0
Medtr6g061840 Medicago truncatula HOM05D000113 ORTHO05D002571 1.3e-06 58.2 44 63.6
Prupe.8G104500 Prunus persica HOM05D000113 ORTHO05D002571 1.3e-06 58.2 61 55.7
CSS0042127 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 1.7e-06 57.8 39 79.5
CSS0030678 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 2.2e-06 57.4 47 59.6
vmacro08575 Vaccinium macrocarpon HOM05D000742 ORTHO05D000924 2.2e-06 57.4 50 60.0
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 2.8e-06 57.0 44 65.9
Dinv01892 Davidia involucrata HOM05D000742 ORTHO05D000924 2.8e-06 57.0 44 68.2
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.8e-06 56.2 42 73.8
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 4.8e-06 56.2 44 63.6
FAN26G0487 Fragaria x ananassa HOM05D000113 ORTHO05D012125 4.8e-06 56.2 45 62.2
FAN26G1966 Fragaria x ananassa HOM05D000113 ORTHO05D012125 4.8e-06 56.2 45 62.2
MD02G1072500 Malus domestica HOM05D000113 ORTHO05D002571 4.8e-06 56.2 46 63.0
SEGI_02990 Sequoiadendron giganteum HOM05D000113 ORTHO05D002571 4.8e-06 56.2 45 62.2
SEGI_17413 Sequoiadendron giganteum HOM05D000113 ORTHO05D038446 4.8e-06 56.2 45 62.2
DCAR_003991 Daucus carota HOM05D000113 ORTHO05D002571 8.2e-06 55.5 47 61.7


User provided reference genes

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