Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 0.0e+00 1112.4 571 100.0
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 8.4e-281 969.9 575 86.8
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 1.7e-278 962.2 571 86.3
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 5.3e-275 950.7 573 85.5
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.4e-274 948.0 574 85.5
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 4.2e-272 941.0 590 83.6
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 4.3e-269 931.0 571 83.2
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 9.9e-266 919.8 572 82.9
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 4.6e-263 911.0 570 82.1
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 2.2e-257 892.1 581 80.6
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 6.5e-257 890.6 572 79.4
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 8.4e-257 890.2 528 87.1
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 1.4e-256 889.4 570 79.6
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 5.5e-256 887.5 570 78.6
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.0e-254 883.2 570 78.4
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 1.3e-254 882.9 573 79.1
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 8.7e-254 880.2 577 79.0
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 8.7e-254 880.2 575 80.0
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 8.7e-254 880.2 570 78.2
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 4.3e-253 877.9 555 80.9
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 5.7e-253 877.5 573 80.5
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 6.3e-252 874.0 571 79.0
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 1.4e-251 872.8 571 79.3
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 2.4e-251 872.1 571 79.7
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.2e-250 869.8 572 78.1
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 2.6e-250 868.6 571 78.8
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 2.2e-249 865.5 570 78.6
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 2.9e-249 865.1 573 78.5
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 3.8e-249 864.8 570 77.2
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.1e-248 863.2 572 78.8
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.9e-248 862.4 585 77.8
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 3.2e-248 861.7 570 77.5
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 4.2e-248 861.3 585 77.8
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 2.1e-247 859.0 571 78.3
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.7e-247 858.6 572 78.3
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 1.8e-246 855.9 574 78.2
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 1.1e-245 853.2 576 76.9
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.5e-245 852.8 571 76.9
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.5e-245 852.8 571 77.1
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 7.4e-245 850.5 571 76.7
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.8e-244 847.8 573 77.0
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 3.1e-243 845.1 570 75.3
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 3.1e-243 845.1 591 75.6
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 4.1e-243 844.7 573 78.7
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 5.3e-243 844.3 573 75.6
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 5.3e-243 844.3 575 76.7
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 9.1e-243 843.6 573 77.0
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.5e-242 842.8 571 77.6
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 2.0e-242 842.4 576 76.4
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 2.6e-242 842.0 571 77.9
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 2.6e-242 842.0 572 75.9
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 2.6e-242 842.0 578 76.1
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.3e-241 839.7 571 76.2
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.9e-241 838.6 572 76.9
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 6.5e-241 837.4 635 70.6
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 6.5e-241 837.4 573 76.6
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.4e-240 836.3 574 77.7
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.9e-240 835.9 572 75.0
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 5.5e-240 834.3 573 76.3
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.6e-239 832.8 572 77.6
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.0e-238 830.1 578 75.4
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 3.9e-238 828.2 571 75.7
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.5e-237 826.2 573 73.8
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.8e-236 821.2 575 73.6
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.3e-236 820.8 575 73.6
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.4e-235 819.7 575 73.4
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.4e-235 819.7 575 73.4
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 5.3e-235 817.8 576 75.7
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 3.8e-233 811.6 554 76.9
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.6e-231 806.2 602 70.3
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 2.0e-229 799.3 738 61.0
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 3.3e-229 798.5 566 74.0
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.7e-228 796.2 562 74.6
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 2.4e-227 792.3 570 74.4
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 3.1e-227 792.0 675 65.8
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.6e-226 788.9 584 73.8
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 9.4e-224 780.4 581 72.3
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 1.4e-222 776.5 571 72.2
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.8e-222 776.2 518 78.8
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 2.6e-221 772.3 574 72.5
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.4e-221 771.9 566 72.3
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 2.8e-220 768.8 572 72.0
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 7.7e-218 760.8 584 70.0
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 1.1e-216 756.9 576 71.7
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 3.2e-216 755.4 508 76.6
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 9.4e-216 753.8 591 68.7
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 2.1e-215 752.7 591 70.1
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 8.0e-215 750.7 584 67.6
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 4.0e-214 748.4 572 69.6
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 4.0e-214 748.4 560 70.5
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 8.8e-214 747.3 558 71.1
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 2.6e-213 745.7 555 72.3
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 2.2e-212 742.7 561 70.1
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 3.5e-210 735.3 569 68.4
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 5.9e-210 734.6 558 71.0
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 5.9e-210 734.6 558 71.0
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 5.9e-210 734.6 558 71.0
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 7.2e-208 727.6 558 70.1
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 2.1e-207 726.1 558 70.1
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 2.8e-207 725.7 555 69.4
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 2.6e-205 719.2 500 73.6
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 4.9e-204 714.9 580 66.6
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 7.3e-200 701.0 559 67.3
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 2.3e-198 696.0 569 67.1
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 9.8e-197 690.6 572 66.4
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 1.7e-196 689.9 577 67.2
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 6.0e-186 654.8 492 70.7
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 2.8e-183 646.0 421 78.9
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 3.5e-178 629.0 591 61.3
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 6.9e-150 535.0 386 73.8
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 1.4e-147 527.3 612 51.6
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.6e-138 497.3 596 52.3
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 2.3e-137 493.4 500 56.4
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 2.3e-137 493.4 500 56.4
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 2.3e-137 493.4 500 56.4
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 7.2e-131 471.9 352 70.5
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 8.2e-127 458.4 486 54.7
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 1.1e-120 438.0 264 82.6
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 3.2e-86 323.6 260 68.5
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 2.7e-85 320.5 242 72.3
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 1.7e-84 317.8 556 42.6
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-83 315.1 196 80.6
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 1.0e-81 308.5 354 51.1
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 1.2e-80 305.1 333 56.5
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 2.4e-78 297.4 163 90.2
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.2e-74 285.0 164 87.2
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 2.3e-73 280.8 164 86.0
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.3e-68 265.0 194 71.6
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 2.1e-66 257.7 273 54.2
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 1.2e-64 251.9 417 41.0
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 1.9e-59 234.6 169 75.1
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 4.7e-58 229.9 437 36.4
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.6e-53 214.9 421 38.5
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.8e-49 201.4 134 74.6
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 7.1e-46 189.5 119 82.4
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 3.5e-45 187.2 180 60.6
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-43 182.2 115 80.0
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 1.2e-37 162.2 622 28.9
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 3.5e-37 160.6 147 59.2
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 2.1e-34 151.4 158 57.0
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 3.9e-28 130.6 75 86.7
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-25 122.5 113 58.4
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 6.5e-23 113.2 78 71.8
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 2.5e-22 111.3 58 93.1
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.2e-22 110.9 119 52.9
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.0e-20 105.9 66 81.8
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 3.0e-20 104.4 83 60.2
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.9e-19 101.7 69 73.9
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 7.4e-19 99.8 70 74.3
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 9.7e-19 99.4 182 40.1
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 2.2e-15 88.2 137 40.1
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.1e-14 85.9 57 78.9
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.2e-13 82.4 86 54.7
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 3.0e-12 77.8 49 81.6
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 1.3e-10 72.4 87 43.7
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.2e-10 71.6 64 62.5
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 2.0e-08 65.1 36 80.6
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 1.4e-06 58.9 63 49.2
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 5.5e-06 57.0 63 47.6


User provided reference genes

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