Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029962 Camellia sinensis var. sinensis HOM05D001322 ORTHO05D024715 2.0e-71 272.3 136 100.0
CSS0007183 Camellia sinensis var. sinensis HOM05D001322 ORTHO05D001301 5.3e-40 167.9 92 88.0
Rhsim03G0201100 Rhododendron simsii HOM05D001322 ORTHO05D001301 2.1e-33 146.0 91 75.8
CSS0006620 Camellia sinensis var. sinensis HOM05D001322 ORTHO05D001301 5.3e-32 141.4 92 73.9
Dinv35319 Davidia involucrata HOM05D001322 ORTHO05D001301 5.3e-32 141.4 92 75.0
Hma1.2p1_0538F.1_g174440 Hydrangea macrophylla HOM05D001322 ORTHO05D001301 5.3e-32 141.4 92 73.9
Actinidia08635 Actinidia chinensis HOM05D001322 ORTHO05D001301 1.2e-31 140.2 92 73.9
Dinv05479 Davidia involucrata HOM05D001322 ORTHO05D001301 4.9e-30 134.8 87 75.9
Lj1g0001257 Lotus japonicus HOM05D001322 ORTHO05D001301 7.1e-29 131.0 92 70.7
CiPaw.06G009600 Carya illinoinensis HOM05D001322 ORTHO05D001301 9.3e-29 130.6 92 69.6
Glyma.06G126700 Glycine max HOM05D001322 ORTHO05D001301 9.3e-29 130.6 92 71.7
QL09p010247 Quercus lobata HOM05D001322 ORTHO05D001301 9.3e-29 130.6 92 72.8
vmacro06553 Vaccinium macrocarpon HOM05D001322 ORTHO05D001301 9.3e-29 130.6 100 65.0
Manes.14G007244 Manihot esculenta HOM05D001322 ORTHO05D001301 4.6e-28 128.3 92 70.7
Ca_16689_v3 Cicer arietinum L. HOM05D001322 ORTHO05D001301 7.9e-28 127.5 92 68.5
Thecc.03G194600 Theobroma cacao HOM05D001322 ORTHO05D001301 7.9e-28 127.5 92 70.7
CiPaw.05G255900 Carya illinoinensis HOM05D001322 ORTHO05D001301 1.0e-27 127.1 92 68.5
Potri.012G002600 Populus trichocarpa HOM05D001322 ORTHO05D001301 1.3e-27 126.7 92 66.3
Prupe.2G312400 Prunus persica HOM05D001322 ORTHO05D001301 1.3e-27 126.7 92 71.7
Glyma.04G237300 Glycine max HOM05D001322 ORTHO05D001301 3.0e-27 125.6 92 70.7
COL.COLO4_38239 Corchorus olitorius HOM05D001322 ORTHO05D001301 3.9e-27 125.2 92 68.5
CSS0032849 Camellia sinensis var. sinensis HOM05D001322 ORTHO05D001301 6.7e-27 124.4 98 66.3
Gohir.A08G096200 Gossypium hirsutum HOM05D001322 ORTHO05D001301 8.7e-27 124.0 92 69.6
Sed0016425 Sechium edule HOM05D001322 ORTHO05D001301 1.1e-26 123.6 92 68.5
Duzib205G0821 Durio zibethinus HOM05D001322 ORTHO05D001301 1.5e-26 123.2 92 68.5
Gohir.D08G103400 Gossypium hirsutum HOM05D001322 ORTHO05D001301 1.5e-26 123.2 92 69.6
Gorai.004G115100 Gossypium raimondii HOM05D001322 ORTHO05D001301 1.5e-26 123.2 92 69.6
BcaB05g22013 Brassica carinata HOM05D001322 ORTHO05D001301 2.5e-26 122.5 92 64.1
Haze_00159 Corylus avellana HOM05D001322 ORTHO05D001301 2.5e-26 122.5 92 68.5
Gohir.A12G251000 Gossypium hirsutum HOM05D001322 ORTHO05D001301 2.5e-26 122.5 92 66.3
GSVIVG01028700001 Vitis vinifera HOM05D001322 ORTHO05D001301 2.5e-26 122.5 92 68.5
TPR.G17289 Trifolium pratense HOM05D001322 ORTHO05D001301 3.3e-26 122.1 92 68.5
TAR629G0878 Trochodendron aralioides HOM05D001322 ORTHO05D001301 3.3e-26 122.1 92 67.4
Duzib068G0827 Durio zibethinus HOM05D001322 ORTHO05D001301 4.3e-26 121.7 92 71.7
TWI14G0128 Tripterygium wilfordii HOM05D001322 ORTHO05D001301 4.3e-26 121.7 92 67.4
Oeu037103.2 Olea europaea HOM05D001322 ORTHO05D001301 5.7e-26 121.3 93 65.6
CANSAT21G1579 Cannabis sativa HOM05D001322 ORTHO05D001301 7.4e-26 120.9 92 67.4
Gohir.D12G251800 Gossypium hirsutum HOM05D001322 ORTHO05D001301 7.4e-26 120.9 92 66.3
Gorai.008G269900 Gossypium raimondii HOM05D001322 ORTHO05D001301 7.4e-26 120.9 92 66.3
Manes.06G158700 Manihot esculenta HOM05D001322 ORTHO05D001301 7.4e-26 120.9 92 67.4
Sed0009588 Sechium edule HOM05D001322 ORTHO05D001301 7.4e-26 120.9 92 64.1
Thhalv10013929m.g Eutrema salsugineum HOM05D001322 ORTHO05D001301 9.7e-26 120.6 92 65.2
Oeu036105.1 Olea europaea HOM05D001322 ORTHO05D001301 9.7e-26 120.6 93 63.4
THA.LOC104800298 Tarenaya hassleriana HOM05D001322 ORTHO05D001301 9.7e-26 120.6 92 66.3
Lalb_Chr11g0066701 Lupinus albus HOM05D001322 ORTHO05D001301 1.3e-25 120.2 92 66.3
PGSC0003DMG400009077 Solanum tuberosum HOM05D001322 ORTHO05D001301 1.6e-25 119.8 92 62.0
MBI07_g23929_MAGBIO Magnolia biondii HOM05D001322 ORTHO05D001301 3.7e-25 118.6 84 70.2
MD01G1221000 Malus domestica HOM05D001322 ORTHO05D001301 3.7e-25 118.6 92 68.5
TAR375G0410 Trochodendron aralioides HOM05D001322 ORTHO05D001301 3.7e-25 118.6 92 64.1
TAR375G0456 Trochodendron aralioides HOM05D001322 ORTHO05D001301 3.7e-25 118.6 92 64.1
VMungo1309G0718 Vigna mungo HOM05D001322 ORTHO05D001301 3.7e-25 118.6 92 65.2
CsaV3_3G028000 Cucumis sativus L. HOM05D001322 ORTHO05D001301 4.8e-25 118.2 92 65.2
FvH4_7g31820 Fragaria vesca HOM05D001322 ORTHO05D001301 6.3e-25 117.9 92 66.3
FAN06G0578 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.3e-25 117.9 92 66.3
FAN06G1996 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.3e-25 117.9 92 66.3
Aqoxy7G00117 Aquilegia oxysepala HOM05D001322 ORTHO05D001301 8.2e-25 117.5 92 62.0
MELO3C008477.2 Cucumis melo HOM05D001322 ORTHO05D001301 8.2e-25 117.5 92 63.0
Sc19g0000900 Simmondsia chinensis HOM05D001322 ORTHO05D001301 1.1e-24 117.1 92 59.8
TAR636G0118 Trochodendron aralioides HOM05D001322 ORTHO05D001301 1.1e-24 117.1 82 65.9
arahy.Tifrunner.gnm1.ann1.WC4CIS Arachis hypogaea HOM05D001322 ORTHO05D001301 1.4e-24 116.7 92 65.2
Phvul.009G054800 Phaseolus vulgaris HOM05D001322 ORTHO05D001301 1.4e-24 116.7 87 66.7
RcHm_v2.0_Chr1g0381051 Rosa chinensis HOM05D001322 ORTHO05D001301 1.4e-24 116.7 92 65.2
Cc02_g01740 Coffea canephora HOM05D001322 ORTHO05D001301 1.8e-24 116.3 92 59.8
PGR042G2191 Punica granatum HOM05D001322 ORTHO05D001301 1.8e-24 116.3 92 64.1
FAN01G0681 Fragaria x ananassa HOM05D001322 ORTHO05D001301 2.4e-24 115.9 92 65.2
FAN10G2653 Fragaria x ananassa HOM05D001322 ORTHO05D001301 2.4e-24 115.9 92 65.2
MD07G1291100 Malus domestica HOM05D001322 ORTHO05D001301 2.4e-24 115.9 92 67.4
Solyc03g007240.3 Solanum lycopersicum HOM05D001322 ORTHO05D001301 2.4e-24 115.9 92 60.9
SGA_v2.0_scaffold44G16781 Striga asiatica HOM05D001322 ORTHO05D010173 2.4e-24 115.9 104 54.8
BraA10t43143Z Brassica rapa HOM05D001322 ORTHO05D001301 3.1e-24 115.5 93 61.3
DCAR_010607 Daucus carota HOM05D001322 ORTHO05D001301 3.1e-24 115.5 87 62.1
Psat5g077760 Pisum sativum HOM05D001322 ORTHO05D001301 3.1e-24 115.5 92 64.1
Carub.0008s1332 Capsella rubella HOM05D001322 ORTHO05D001301 4.1e-24 115.2 93 63.4
Medtr3g091090 Medicago truncatula HOM05D001322 ORTHO05D001301 4.1e-24 115.2 92 64.1
TWI39G0151 Tripterygium wilfordii HOM05D001322 ORTHO05D001301 4.1e-24 115.2 92 67.4
CAN.G108.44 Capsicum annuum HOM05D001322 ORTHO05D001301 5.3e-24 114.8 94 61.7
CsaV3_5G000580 Cucumis sativus L. HOM05D001322 ORTHO05D001301 5.3e-24 114.8 92 60.9
Sp6g15290 Schrenkiella parvula HOM05D001322 ORTHO05D001301 5.3e-24 114.8 92 62.0
AT5G53120 Arabidopsis thaliana HOM05D001322 ORTHO05D001301 6.9e-24 114.4 93 63.4
EL10Ac3g05325 Beta vulgaris HOM05D001322 ORTHO05D001301 6.9e-24 114.4 92 60.9
Eucgr.A01487 Eucalyptus grandis HOM05D001322 ORTHO05D001301 6.9e-24 114.4 93 63.4
FAN10G2745 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.9e-24 114.4 92 64.1
Os06g0528600 Oryza sativa ssp. japonica HOM05D001322 ORTHO05D001301 6.9e-24 114.4 76 71.1
MSTRG.27038 Avicennia marina HOM05D001322 ORTHO05D001301 9.0e-24 114.0 93 60.2
A02p11280 Brassica napus HOM05D001322 ORTHO05D001301 9.0e-24 114.0 92 59.8
BraA02t06190Z Brassica rapa HOM05D001322 ORTHO05D001301 9.0e-24 114.0 92 59.8
ClCG05G008810 Citrullus lanatus HOM05D001322 ORTHO05D001301 9.0e-24 114.0 92 63.0
Sopen03g003220 Solanum pennellii HOM05D001322 ORTHO05D001301 9.0e-24 114.0 93 63.4
Aa31LG3G9350 Aethionema arabicum HOM05D001322 ORTHO05D001301 1.2e-23 113.6 92 63.0
Atru.chr1.143 Acer truncatum HOM05D001322 ORTHO05D001301 1.5e-23 113.2 77 67.5
arahy.Tifrunner.gnm1.ann1.3EVA1Y Arachis hypogaea HOM05D001322 ORTHO05D001301 1.5e-23 113.2 89 66.3
Hund11677 Selenicereus undatus HOM05D001322 ORTHO05D001301 1.5e-23 113.2 92 63.0
BcaB08g35671 Brassica carinata HOM05D001322 ORTHO05D001301 2.6e-23 112.5 93 62.4
A10p10620 Brassica napus HOM05D001322 ORTHO05D001301 3.4e-23 112.1 93 61.3
AL8G27770 Arabidopsis lyrata HOM05D001322 ORTHO05D001301 4.5e-23 111.7 93 61.3
MBI07_g37610_MAGBIO Magnolia biondii HOM05D001322 ORTHO05D001301 4.5e-23 111.7 108 55.6
CARHR266150 Cardamine hirsuta HOM05D001322 ORTHO05D001301 5.9e-23 111.3 93 62.4
Os02g0254700 Oryza sativa ssp. japonica HOM05D001322 ORTHO05D024715 5.9e-23 111.3 77 64.9
HanXRQChr13g0393111 Helianthus annuus HOM05D001322 ORTHO05D001301 1.3e-22 110.2 94 60.6
AUR62019357 Chenopodium quinoa HOM05D001322 ORTHO05D001301 1.7e-22 109.8 92 59.8
Lsat_1_v5_gn_8_5021 Lactuca sativa HOM05D001322 ORTHO05D001301 1.7e-22 109.8 94 60.6
Nn1g01881 Nelumbo nucifera HOM05D001322 ORTHO05D001301 1.7e-22 109.8 92 66.3
Zm00001eb230230 Zea mays HOM05D001322 ORTHO05D001301 1.7e-22 109.8 76 65.8
BcaC04g20503 Brassica carinata HOM05D001322 ORTHO05D001301 2.2e-22 109.4 94 59.6
BolC9t57158H Brassica oleracea HOM05D001322 ORTHO05D001301 2.2e-22 109.4 94 59.6
ECA232G0869 Erigeron canadensis HOM05D001322 ORTHO05D001301 2.9e-22 109.0 85 60.0
Ah.07g205930 Amaranthus hybridus HOM05D001322 ORTHO05D001301 3.8e-22 108.6 92 58.7
Medtr1g028360 Medicago truncatula HOM05D001322 ORTHO05D001301 5.0e-22 108.2 87 62.1
Nitab4.5_0012491g0010 Nicotiana tabacum HOM05D001322 ORTHO05D001301 8.5e-22 107.5 96 58.3
CDE10G0118 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 1.1e-21 107.1 83 62.7
Zm00001eb204260 Zea mays HOM05D001322 ORTHO05D001301 1.1e-21 107.1 76 64.5
Migut.F00231 Erythranthe guttata HOM05D001322 ORTHO05D001301 1.4e-21 106.7 80 60.0
Zm00001eb383120 Zea mays HOM05D001322 ORTHO05D001301 1.4e-21 106.7 83 62.7
Peaxi162Scf00198g00014 Petunia axillaris HOM05D001322 ORTHO05D001301 2.5e-21 105.9 92 56.5
BcaC03g14453 Brassica carinata HOM05D001322 ORTHO05D001301 3.2e-21 105.5 76 65.8
C02p18640 Brassica napus HOM05D001322 ORTHO05D001301 3.2e-21 105.5 76 65.8
BolC2t08009H Brassica oleracea HOM05D001322 ORTHO05D001301 3.2e-21 105.5 76 65.8
Lj1C1014G8 Lonicera japonica HOM05D001322 ORTHO05D001301 4.2e-21 105.1 92 62.0
HanXRQChr09g0252991 Helianthus annuus HOM05D001322 ORTHO05D001301 5.5e-21 104.8 86 55.8
AUR62006132 Chenopodium quinoa HOM05D001322 ORTHO05D001301 7.2e-21 104.4 92 58.7
unitig_46.g18815 Utricularia gibba HOM05D001322 ORTHO05D001301 9.4e-21 104.0 92 53.3
CDE10G1134 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 1.6e-20 103.2 77 62.3
ATR0188G012 Amborella trichopoda HOM05D001322 ORTHO05D001301 3.6e-20 102.1 76 65.8
ECA233G0891 Erigeron canadensis HOM05D001322 ORTHO05D001301 3.6e-20 102.1 96 56.2
HPP92_006485 Vanilla planifolia HOM05D001322 ORTHO05D001301 3.6e-20 102.1 77 62.3
HPP92_006486 Vanilla planifolia HOM05D001322 ORTHO05D024715 3.6e-20 102.1 77 62.3
SalBow4G0680 Salvia bowleyana HOM05D001322 ORTHO05D001301 6.1e-20 101.3 101 56.4
SalBow4G3105 Salvia bowleyana HOM05D001322 ORTHO05D001301 6.1e-20 101.3 101 56.4
Lsat_1_v5_gn_2_135921 Lactuca sativa HOM05D001322 ORTHO05D001301 7.9e-20 100.9 94 57.4
PSO384G4018 Papaver somniferum HOM05D001322 ORTHO05D001301 1.4e-19 100.1 92 59.8
Nitab4.5_0000714g0010 Nicotiana tabacum HOM05D001322 ORTHO05D001301 1.8e-19 99.8 93 55.9
PSO063G6314 Papaver somniferum HOM05D001322 ORTHO05D001301 1.8e-19 99.8 92 55.4
PSO170G6896 Papaver somniferum HOM05D001322 ORTHO05D001301 2.3e-19 99.4 92 55.4
SGA_v2.0_scaffold2010G54068 Striga asiatica HOM05D001322 ORTHO05D001301 6.7e-19 97.8 118 47.5
Lsat_1_v5_gn_9_58061 Lactuca sativa HOM05D001322 ORTHO05D001301 1.3e-17 93.6 85 52.9
Cpa.g.sc3.61 Carica papaya HOM05D008085 ORTHO05D010173 4.8e-17 91.7 92 57.6
FAN03G2740 Fragaria x ananassa HOM05D001322 ORTHO05D001301 9.1e-16 87.4 112 47.3
Phvul.009G055300 Phaseolus vulgaris HOM05D003584 ORTHO05D004148 9.1e-16 87.4 67 65.7
ClCG01G000500 Citrullus lanatus HOM05D001322 ORTHO05D001301 1.7e-14 83.2 92 52.2
FAN05G0635 Fragaria x ananassa HOM05D001322 ORTHO05D024715 1.9e-13 79.7 72 58.3
C09p42820 Brassica napus HOM05D001322 ORTHO05D001301 1.4e-11 73.6 42 73.8
Sabra12G0018900 Salix brachista HOM05D001322 ORTHO05D001301 5.1e-11 71.6 118 43.2
Potri.015G018900 Populus trichocarpa HOM05D001322 ORTHO05D001301 8.8e-11 70.9 41 75.6
Lsat_1_v5_gn_3_87780 Lactuca sativa HOM05D001322 ORTHO05D001301 1.5e-10 70.1 97 44.3
MELO3C005877.2 Cucumis melo HOM05D001322 ORTHO05D001301 1.7e-09 66.6 46 67.4
Cfa009106 Carpinus fangiana HOM05D001322 ORTHO05D001301 7.7e-07 57.8 76 43.4
Haze_12143 Corylus avellana HOM05D001322 ORTHO05D001301 7.7e-07 57.8 76 43.4
QL03p061719 Quercus lobata HOM05D001322 ORTHO05D001301 1.0e-06 57.4 76 36.8
A08p28000 Brassica napus HOM05D001322 ORTHO05D001301 1.3e-06 57.0 69 40.6
BraA08t34730Z Brassica rapa HOM05D001322 ORTHO05D001301 1.3e-06 57.0 69 40.6
AL1G37570 Arabidopsis lyrata HOM05D001322 ORTHO05D001301 1.7e-06 56.6 61 42.6
AT1G23820 Arabidopsis thaliana HOM05D001322 ORTHO05D001301 1.7e-06 56.6 61 42.6
Carub.0001s2332 Capsella rubella HOM05D001322 ORTHO05D001301 1.7e-06 56.6 61 42.6
Dinv24873 Davidia involucrata HOM05D001322 ORTHO05D001301 1.7e-06 56.6 65 43.1
HPP92_021647 Vanilla planifolia HOM05D001322 ORTHO05D001301 1.7e-06 56.6 32 75.0
Aa31LG7G7700 Aethionema arabicum HOM05D001322 ORTHO05D001301 3.8e-06 55.5 66 39.4
BcaB07g32356 Brassica carinata HOM05D001322 ORTHO05D001301 3.8e-06 55.5 80 33.8
C07p20240 Brassica napus HOM05D001322 ORTHO05D001301 3.8e-06 55.5 85 35.3
C08p22130 Brassica napus HOM05D001322 ORTHO05D001301 3.8e-06 55.5 71 42.3
CARHR024220 Cardamine hirsuta HOM05D001322 ORTHO05D001301 3.8e-06 55.5 61 42.6
AL2G29610 Arabidopsis lyrata HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 42.6
BcaB03g11956 Brassica carinata HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 41.0
BcaC05g26289 Brassica carinata HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 41.0
BcaC06g35054 Brassica carinata HOM05D001322 ORTHO05D001301 5.0e-06 55.1 85 35.3
BcaC07g39216 Brassica carinata HOM05D001322 ORTHO05D018504 5.0e-06 55.1 61 41.0
A07p13770 Brassica napus HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 41.0
A09p41000 Brassica napus HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 41.0
C05p22990 Brassica napus HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 41.0
BolC5t30998H Brassica oleracea HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 41.0
BolC7t42546H Brassica oleracea HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 41.0
BolC8t49859H Brassica oleracea HOM05D001322 ORTHO05D001301 5.0e-06 55.1 71 40.8
BraA07t29126Z Brassica rapa HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 41.0
BraA09t39594Z Brassica rapa HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 41.0
Carub.0002s1699 Capsella rubella HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 42.6
CiPaw.06G074400 Carya illinoinensis HOM05D001322 ORTHO05D001301 5.0e-06 55.1 71 42.3
Thhalv10007822m.g Eutrema salsugineum HOM05D001322 ORTHO05D001301 5.0e-06 55.1 61 41.0
TAR622G0365 Trochodendron aralioides HOM05D001322 ORTHO05D001301 5.0e-06 55.1 69 43.5
TAR622G1069 Trochodendron aralioides HOM05D001322 ORTHO05D001301 5.0e-06 55.1 69 43.5
HPP92_021641 Vanilla planifolia HOM05D001322 ORTHO05D001301 5.0e-06 55.1 31 74.2
AT1G70310 Arabidopsis thaliana HOM05D001322 ORTHO05D001301 6.5e-06 54.7 61 41.0
TAR371G0895 Trochodendron aralioides HOM05D001322 ORTHO05D001301 6.5e-06 54.7 61 44.3
CiPaw.05G146600 Carya illinoinensis HOM05D001322 ORTHO05D001301 8.5e-06 54.3 71 42.3
Gohir.A03G140700 Gossypium hirsutum HOM05D001322 ORTHO05D001301 8.5e-06 54.3 71 38.0
MBI14_g43246_MAGBIO Magnolia biondii HOM05D001322 ORTHO05D001301 8.5e-06 54.3 31 71.0


User provided reference genes

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