Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 3.7e-140 501.5 253 100.0
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 3.7e-140 501.5 253 100.0
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 1.8e-105 386.3 255 76.1
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 2.6e-101 372.5 252 73.0
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 3.7e-95 352.1 256 68.4
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 6.3e-95 351.3 252 69.4
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 3.4e-93 345.5 252 66.7
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 4.5e-93 345.1 243 69.1
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 3.8e-92 342.0 252 66.3
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 1.1e-88 330.5 251 65.3
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 3.3e-88 328.9 253 65.2
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 4.3e-88 328.6 252 65.1
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 4.3e-88 328.6 251 64.9
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 9.7e-88 327.4 248 65.3
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 3.7e-87 325.5 252 63.5
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 3.7e-87 325.5 252 63.1
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 3.7e-87 325.5 252 63.5
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 4.8e-87 325.1 255 62.4
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 6.3e-87 324.7 325 56.0
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 1.8e-86 323.2 252 63.1
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 2.0e-85 319.7 251 62.5
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 1.0e-84 317.4 252 61.9
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 2.9e-84 315.8 253 61.7
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 2.9e-84 315.8 274 58.4
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 3.8e-84 315.5 253 61.3
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 8.5e-84 314.3 220 68.6
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 1.9e-83 313.2 244 62.3
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 5.5e-83 311.6 251 62.2
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 9.4e-83 310.8 245 60.0
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 1.2e-82 310.5 251 60.6
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 1.6e-82 310.1 251 61.8
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 2.1e-82 309.7 252 59.9
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 2.1e-82 309.7 252 59.9
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 3.6e-82 308.9 254 61.0
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 4.6e-82 308.5 259 60.2
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 1.8e-81 306.6 252 59.1
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 3.9e-81 305.4 252 60.3
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 1.5e-80 303.5 255 61.2
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 7.4e-80 301.2 252 59.9
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 9.7e-80 300.8 249 61.0
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 2.2e-79 299.7 205 72.2
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 2.2e-79 299.7 253 61.3
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 2.8e-79 299.3 209 65.6
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 4.8e-79 298.5 255 59.6
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 1.4e-78 297.0 253 57.3
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 1.8e-78 296.6 254 59.8
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 4.1e-78 295.4 212 67.0
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 2.0e-77 293.1 249 57.8
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 2.6e-77 292.7 253 58.5
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 4.5e-77 292.0 253 57.7
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 5.9e-77 291.6 251 58.6
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 5.9e-77 291.6 254 58.7
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 1.3e-76 290.4 254 57.5
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 1.7e-76 290.0 247 57.9
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 3.8e-76 288.9 248 56.9
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 6.5e-76 288.1 252 56.7
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 8.5e-76 287.7 252 56.0
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 1.4e-75 287.0 252 56.0
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 1.4e-75 287.0 251 57.0
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 4.2e-75 285.4 251 57.0
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 7.2e-75 284.6 257 56.4
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 9.4e-75 284.3 251 56.2
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 1.2e-74 283.9 252 55.6
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 1.2e-74 283.9 252 57.9
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 1.6e-74 283.5 248 57.3
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 2.1e-74 283.1 252 55.6
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 2.1e-74 283.1 251 56.2
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 1.0e-73 280.8 259 54.4
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 5.2e-73 278.5 251 54.2
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 5.2e-73 278.5 204 67.2
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 8.8e-73 277.7 256 56.2
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 1.5e-72 276.9 251 55.8
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 1.5e-72 276.9 252 55.2
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 2.0e-72 276.6 252 57.5
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 2.6e-72 276.2 251 55.0
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 4.4e-72 275.4 239 57.7
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 9.7e-72 274.2 251 56.6
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 9.7e-72 274.2 241 56.8
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 1.7e-71 273.5 252 56.7
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 2.2e-71 273.1 243 55.6
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 1.4e-70 270.4 252 52.4
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 1.4e-70 270.4 252 52.4
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 3.1e-70 269.2 251 54.6
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 5.3e-70 268.5 252 57.1
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 7.7e-69 264.6 255 52.9
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 5.0e-68 261.9 255 52.5
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 3.2e-67 259.2 252 52.8
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 5.5e-67 258.5 255 51.8
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 5.5e-67 258.5 222 58.1
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 2.7e-66 256.1 252 52.8
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 1.0e-65 254.2 211 59.2
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 2.7e-61 239.6 202 56.4
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 3.5e-61 239.2 183 59.6
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 7.2e-59 231.5 299 45.8
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 4.0e-57 225.7 250 50.4
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 3.4e-56 222.6 251 50.2
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 2.3e-52 209.9 182 59.3
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 1.5e-51 207.2 180 61.7
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 1.5e-48 197.2 218 54.6
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 5.9e-45 185.3 120 70.0
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 2.9e-44 183.0 249 39.8
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 1.6e-42 177.2 147 57.8
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 3.4e-40 169.5 243 35.8
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 8.3e-39 164.9 166 54.8
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 1.4e-38 164.1 130 64.6
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 2.4e-38 163.3 264 34.5
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 7.8e-37 158.3 131 64.1
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 3.6e-34 149.4 128 53.9
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 1.4e-33 147.5 239 34.3
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 2.9e-31 139.8 203 37.4
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 2.0e-29 133.7 175 40.6
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 6.2e-26 122.1 147 49.0
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 2.1e-21 107.1 100 55.0
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 6.4e-15 85.5 221 28.1
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 2.1e-13 80.5 120 30.8
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 1.5e-11 74.3 89 37.1
Haze_09393 Corylus avellana HOM05D006561 ORTHO05D008097 4.3e-11 72.8 110 43.6
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 2.8e-10 70.1 113 31.9
Haze_09398 Corylus avellana HOM05D006561 ORTHO05D008097 8.1e-10 68.6 57 64.9
Haze_09394 Corylus avellana HOM05D006561 ORTHO05D165302 1.1e-09 68.2 130 35.4
Nn2g11894 Nelumbo nucifera HOM05D001060 ORTHO05D008097 2.4e-09 67.0 115 39.1
Os05g0563500 Oryza sativa ssp. japonica HOM05D006561 ORTHO05D008097 3.4e-08 63.2 82 39.0
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 8.4e-07 58.5 51 45.1


User provided reference genes

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