Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.5e-70 267.3 138 100.0
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.6e-60 235.0 162 80.9
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.3e-51 205.7 162 72.8
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.0e-46 188.0 137 75.9
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 5.4e-32 141.4 143 56.6
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 4.5e-31 138.3 145 54.5
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 3.6e-28 128.6 140 51.4
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 3.6e-28 128.6 146 51.4
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 4.7e-28 128.3 133 53.4
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 4.7e-28 128.3 135 52.6
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 6.1e-28 127.9 140 50.7
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 8.0e-28 127.5 140 51.4
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.3e-27 125.9 140 50.7
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 3.0e-27 125.6 143 53.1
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 5.2e-27 124.8 140 50.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 8.9e-27 124.0 140 49.3
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.2e-26 123.6 144 48.6
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 5.7e-26 121.3 143 48.3
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.3e-25 120.2 153 46.4
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.3e-25 120.2 149 45.6
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.7e-25 119.8 134 47.8
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 5.4e-24 114.8 113 55.8
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 7.0e-24 114.4 145 47.6
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.2e-23 113.6 125 52.8
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.6e-23 113.2 125 51.2
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 2.7e-23 112.5 126 50.8
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.0e-22 110.5 155 43.9
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 1.7e-22 109.8 159 43.4
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 2.3e-22 109.4 147 44.9
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 2.3e-22 109.4 146 47.3
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 2.3e-22 109.4 123 49.6
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 3.9e-22 108.6 142 46.5
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 3.9e-22 108.6 163 40.5
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.1e-21 107.1 125 49.6
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 2.5e-21 105.9 163 45.4
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 4.3e-21 105.1 114 53.5
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.3e-21 105.1 132 47.7
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 7.3e-21 104.4 141 45.4
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 9.5e-21 104.0 131 47.3
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 9.5e-21 104.0 132 47.0
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.2e-20 103.6 136 44.9
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.2e-20 103.6 126 46.8
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 1.6e-20 103.2 141 45.4
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.6e-20 102.1 132 44.7
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 3.6e-20 102.1 122 47.5
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 3.6e-20 102.1 127 48.0
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 4.7e-20 101.7 66 75.8
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 6.1e-20 101.3 141 44.0
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 6.1e-20 101.3 139 43.9
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 6.1e-20 101.3 139 45.3
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 8.0e-20 100.9 128 40.6
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 8.0e-20 100.9 162 39.5
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 2.3e-19 99.4 128 46.9
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 6.8e-19 97.8 132 43.2
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 6.8e-19 97.8 153 41.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 8.9e-19 97.4 67 68.7
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 8.9e-19 97.4 127 46.5
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 8.9e-19 97.4 143 44.8
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.5e-18 96.7 123 48.8
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.4e-18 95.5 144 43.1
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 5.8e-18 94.7 146 42.5
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 5.8e-18 94.7 146 40.4
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 5.8e-18 94.7 146 41.8
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 5.8e-18 94.7 151 41.7
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 9.8e-18 94.0 123 43.9
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.3e-17 93.6 146 42.5
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.3e-17 93.6 142 41.5
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.7e-17 93.2 134 43.3
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.2e-17 92.8 145 40.0
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 2.2e-17 92.8 160 41.2
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 2.2e-17 92.8 143 42.0
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 2.2e-17 92.8 129 44.2
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.9e-17 92.4 141 42.6
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.9e-17 92.4 140 41.4
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.9e-17 92.4 67 64.2
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.7e-17 92.0 140 40.0
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 3.7e-17 92.0 160 40.6
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 6.4e-17 91.3 112 47.3
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 6.4e-17 91.3 65 69.2
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 6.4e-17 91.3 160 39.4
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 6.4e-17 91.3 161 39.8
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 8.3e-17 90.9 67 65.7
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 8.3e-17 90.9 142 40.8
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 8.3e-17 90.9 153 42.5
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.4e-16 90.1 128 43.0
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.9e-16 89.7 130 44.6
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 1.9e-16 89.7 144 39.6
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.9e-16 89.7 59 74.6
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 1.9e-16 89.7 105 49.5
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.9e-16 89.7 124 45.2
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.4e-16 89.4 66 65.2
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.4e-16 89.4 141 40.4
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 3.2e-16 89.0 63 66.7
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 4.1e-16 88.6 122 47.5
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 5.4e-16 88.2 68 63.2
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.2e-15 87.0 143 39.2
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.2e-15 87.0 130 42.3
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 2.0e-15 86.3 104 47.1
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 2.0e-15 86.3 138 40.6
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 3.5e-15 85.5 141 42.6
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 3.5e-15 85.5 69 60.9
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 6.0e-15 84.7 88 53.4
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 6.0e-15 84.7 88 53.4
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 3.0e-14 82.4 149 39.6
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 3.9e-14 82.0 146 37.7
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 3.9e-14 82.0 146 37.7
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 3.9e-14 82.0 146 37.7
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 3.9e-14 82.0 147 40.1
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 3.9e-14 82.0 135 41.5
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 5.0e-14 81.6 66 59.1
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 5.0e-14 81.6 135 41.5
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 6.6e-14 81.3 148 39.2
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 8.6e-14 80.9 64 57.8
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 8.6e-14 80.9 148 39.2
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.5e-13 80.1 124 39.5
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.9e-13 79.7 128 40.6
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.9e-13 79.7 128 40.6
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 2.5e-13 79.3 152 34.2
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 2.5e-13 79.3 152 34.2
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.3e-13 79.0 52 69.2
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 5.6e-13 78.2 88 48.9
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 7.3e-13 77.8 124 39.5
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 7.3e-13 77.8 64 60.9
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 7.3e-13 77.8 162 40.1
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 9.5e-13 77.4 65 53.8
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-12 77.0 70 52.9
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.6e-12 76.6 151 34.4
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.6e-12 76.6 150 34.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 2.1e-12 76.3 68 54.4
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.1e-12 76.3 124 38.7
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 2.8e-12 75.9 68 54.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.8e-12 75.9 106 42.5
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 4.7e-12 75.1 67 53.7
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 8.1e-12 74.3 67 52.2
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.4e-11 73.6 143 35.7
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.4e-11 73.6 133 35.3
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.2e-10 70.5 125 40.8
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 2.0e-10 69.7 116 39.7
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.0e-10 69.7 68 50.0
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.4e-10 68.9 102 41.2
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 9.8e-10 67.4 100 39.0
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.2e-09 66.2 76 48.7
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 4.9e-09 65.1 146 31.5
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 3.2e-08 62.4 114 36.8
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 4.1e-08 62.0 120 34.2
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.2e-07 60.5 107 33.6
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.2e-07 60.5 66 51.5
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 4.6e-07 58.5 57 47.4
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 7.8e-07 57.8 41 68.3
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.7e-06 56.6 140 34.3
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 6.6e-06 54.7 65 47.7
Hma1.2p1_0549F.1_g176960 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 6.6e-06 54.7 40 75.0


User provided reference genes

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